LOC110491822 (LOC106567384)


Basic Information

Item Value
gene id LOC110491822
gene name LOC106567384
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 32056948 ~ 32096133 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565612.2
ACACGCCCTTCTTCGGATATTACATTGCTTTTGCGGAGCTAAATATGTTGCGGACCGTTATAATGTAGGCTGTCGATCAATGTTTCGATTAGGCTACAGGCTAAGAAACCCATTTTGGCCATACGATTGTTTAAGATATGTTATAATTTCTGGCATTTATTTCAGCATCACAACATGAAGACGGAGCCGTTAGTTTGACCAAACCTCCACGCAGCACCCGGTATGAACCGGTTTGGGTTATGCGCGATCTCGTGCTACTCCCCCCTCTTGACATGCAGTGTATCACCGCATCCGCGCGCCCTCGTTGGTCACACCCCTATGTTAAGTCACGCATTCTCACCCGCACACATGCTTTGCGAGCCTCCGCAGCATCAGCCTCCTGATTGGACAATAACCCCGGGTACATTCGTTTTCGTCCGGCGCCCCGGGGTTCATTTTAGAACCAATCCAATTGTCTAAAATACACGAACTCGGCCCATTCAGTGTCATGAGCGAGCTAAAACGAATGCACCTATTAATGCGCCCGTTGGTTGACAAGCTGCGATTGGTCGGTATGATGACATAAACTCGATTATCATTCTCCATCTATTTTCGGGGAACGCGGACAATTTTGTTGTAAGCGAAGCGCGTGCTTGAAGAAAAACGCAGAACTGGAAACAAACGTGCACCTTTTCAGCACCCGATCCTCGTGGATAGCCGTACAGGTCCATTCCGCCAACAGCTAATCAATCAGACCAAACAAGCGTGGGTATACAAGCAGCAGCCTTCTTTTTTTCGATAATCATACAGCTACCACAATTGTGTTATTCAGCCAAGCGGCTCCCACGTTCACTGGATACCAGGCCTAGCTGTTGAATTCGATGAGCGGAGGATTCGAAGCAATACTGCACAAGCTTTGTTTGCCCTAAAGGGCTGCAAGTGCAAGGAGCCATAGCTAATACTGCTACAAGTATTGTTTGTAGAAGATAATACATGCTGATATAGATGAGAACGCCCTTATAAACAGTGTAGTGGAGTTACACAGCCTTTGTCTTGTGGTGCTTATGATTCAGCGGGATGTTGGATCGGATGGGACCAGGAATAACGGCCTGCAAATGAAGGGACGCAAGTAGAAATCGAGTAATTAGTCGACTCCATTTAAACGAACAGACTCAATCGTGGTATTTGCTTTTCCCCCTCCACATTGCTTGTTCGTGTAGCTGCACTCTATTGTGTGAGCATCTTTATTATTCCCTTCGCTCTGACCAGGATCCTGCTAGCTCGCCCGCCGCCCCATCGGCCACAGCTGTGTATTAACTACAATTTTTTTAATCGGCACGGCACAGTTCGATATAAACATGTGTTCTCGAGTTTGGTTTGTGACTGACCGGCGTATCCATCAGGAGTATCCGCAAGTTCAGATCCTTCGGGCTCTGAAACAGCGATGCTCCGAGGAGGATGTTGAATTCCGCTCTCTTCTCATGGACCAAATCGTGCTCACCATCAGCGAGGGACAATTAGGTCTGCGGGTCGAGCAGGAGGTGGTGACGTCCTACCCTCAGGTGGCGGTGGTGCGAGTCCCCACCCCCTGGGTGCAGTCGGACAGCGACATCACAGTGCTACGCCACCTGGAAAAGATGGGCTGCCGGCTGGTCAACCGGCCCCAGGCCATCCTCAACTGCGTCAACAAGTTCTGGACCTTCCAGGAGCTGGCCGGCCATGGGGTCCCACTCCCTGACACCTTCTCCTACGGAGGACACGAGAACTTCCGCAAGATGATTGATGAAGCGGAACCGCTGGGCTACCCTGTGGTGGTGAAGAACGCACGTGGTCACAGAGGAAAGGCGGTGTTCCTGGCCAGGGACAAGCACCACCTGGCCGACCTGAGCCACCTGATTCGCCACGACGCTCCCTACCTCTTCCAGGAGTACGTGAAGGAGTCTCACGGCCGCGACGTCCGGGTGGTGCTGGTGGGCGGCCGCGTCATTGGCTCCATGCTGCGCTGCTCCACCGATGGACGCATGCAAAGCAACTGCTCCCTGGGTGGCGTGGGGATGATGTGCCCACTGAGTGAGCAGGGCAAGCAGCTGGCGGTTCAGGTGTCCAACATCCTTGGCATGGACGTGTGCGGCATTGACCTGCTGCAGCTCAACGACGGCTCGTTTGTGGTGTGCGAGGCCAACGCCAATGTGGGCTTCATTGCCTTCGATCAGGCGTGCGGCATGGACGTGGCGGGCATCGTGGCTGACTACGCCCTCTCACTGCTGCCTAGCCGCCTGACACGCAAGATGTCGCTGCTCTCGGTGGTGTCCAGTGCCAGCGAGACTAGCAGCGAGCCTGAGGTGTGCCCGGCGCCCAGTAACGTACTGCCCGAGGCCGTGTGCAACATGAGCGTGGGGTCCACTTCTAGTGAGAGCGACCCCGAGCTGGCCGATACCACCCCGCAGCCCACGAGCCGCCAAGTTGGCCCCAGCCCGGTCCTGCCCAACCTCCCTGACCCGGCCTACAACTTCAACACCCTCCTCGCCAACGAGATCAAACTATTGACTGAGTGAGCCGAATACAGCCACGGCACACatgcacacttacacacacagacacacacacacctgaacacatgGCGATGGACATTCCTgttacagagcacacacacaaactcctatACACATTATACAGGCAGGATGTTACATGCAAAAGCATGAGCTGAACAAacaaaaatgaaatgaaaaatgCCATGACCACAGAAACTGACATTACGAACATTCTCTTACTAACTCCCCCCATAAACACATAGAGATCTGAGGCTGCTCCCCTGACTCTACTGCTCTTCTCCCCAACTGCGAACAACCCAGTTTTACAACCGCAGGTGGTGGCAGAAGTGGGATACAGAAGGTTAGATGAATTACTGAATCTTTTTGTTTTCAATTGCATTGTGTATTTTGGAGAATGAGAATGATGCGTGGTCGTCGTTATAGATCAACCACTGAGGAAGTAGCCAGGCTTGATTTACTGGTGGTGAAATGAAGTGTTTTTCAAGTGATTTTCTCCATAACTGGGCGAGGGGTACATACAGAGGACTAGTTAGACTGCCCACCAGCTCCATGTAGCAGAGGACAGACCTGGTTCACCGTCACAGGGACTATTAAGTGCagattggggtcaattccattttctACCTCAGTTAAATCTGGAAATGGGATGATTGAAAttgacaaataaaaaaatcactgTCACATTTCATTCGTATTAAATTCACAAATTGTCTGTAATCAAAATGGGACTTACCACCCAATGCTGACAAGGAGCCCCTAAACACGGGATCATTAGAATAACAAAACTGACCTAGCACCATTGCCAAGAGGCACCTTGTATAGTAACAACACTACACGATACCCTCTCAAGAGATTCCATCTAGAAATGCATAAGCATAGGTCAAGCACAATTGACCCTGAAACTCTAAAATCGAGCGCTACTGTCACTTGGTTTTCAAGTTAATGTTTTTAGCGGCTTGTTTTTATTAGGATTTTACAAGAACAATAGTCAAACAGCGACTCTTTCTCTTCATCTGAAATAAAGCACTTTAAGATAAACCGATGAATTGCGTGGTGGAACTGCATACTCGggagcaggttgacgtttattgtcatgagggttgtcctggaggcagaactgagttatttccccttagataggctagctgcaaagtcaaatttgtcaatattgtaaaaattcatgaaaagtaaaatgtgctttttggtctcaATTTAGGATTAGAGATGTTATGATtttgtggctgtgctagctagtgaccattctgcagagctgcctccagaacaataTTCATGACGAAAAACTCTAACCTGATACTTTGGAGGCAAGTTCAATCCGTCTAGAAACAGTGCGGAAGCTGTCACTACACCTACAAGAAAAATATACCTCAATACAGAAAACTTCTCACTGCCATAGAATAAACTACTTTGAGTCATACATATCAGCCAGCATCCTTGACTTTACAAGATGTCCCTCCCTTGATACATAGggtgtagatatactgtagtcaagtacattttttgtaaataataattttagaAGTGTTCATGCTTACTAGTCTGGCTGATATGAAAACCATAAGGGCTGAAATAACTTTCTCAACTTAAACATTTTGGTAAACTTGTGTAGAAAAGATTGGTTTGTACAGAACTGCAATGTCAGAAATAAATGTTTTACAAAAAACACAAGTGCTAACGTTTCTGTGGATTTGGCTAAATGTGTTTAATCAGCCCAACGTTTTGGCCGGTGATGAATTACTGTTTATTCAACTCAAGTGAGGTAATCTTCATAAACCTGTTGTACAAATAAAATGCAAAACAATACTTACTTTTTTTTACAGTGTGTTTGATAGAATGTTACTTTTTTTATTCCTCAAAAGGAAAACTTCTCCAGGGATATCTGTTGGTTACTTGCGGTAAATCTACCACTCAGCCTTCAAAAAATACCTATCCTCTAGGTATTAACTTTGGGGCATCCATCATCAACCAAAAAGCATTCGCTGTAATCATCCAAAGCACAAGCCACTCTACTTTGTGCCACTTAGTGACTAGCTACAGCATAGTGTTGAGGCGAATAACCCATATGTAAAAGGCTTCGATGTCAAACCGTTGACTCTAACATAACTCAGGGAAGCAGCCTTGATCTCATCCCCACTCCTAAGGCATGTGACATATCCATCCTAGCTACAGATCTGCCTAAAATGTGTATTGATGACAAACAAAAAAGGATTTGTAACTATTAAAAGATGCGTTGTGCCATTAAGGTTAACACTCACTTTTTTTCCTTACTTGTTTTATAATGTTCAGTGTTTTTTCCACTAATTCATTTCTGGTATTTTTTAAGGATGTGGTTTGTGTGCACTTATCTCGTCTCAAATAAAGTGAGGCCGCTGTGAAGCATGGTTTTTGTGGGGGGCGATTTACTAACCAGCTGGAATCTAATGGGTCTCCATGGGGAAGATATCACGAGTATGCCAAATGTGAACACGGCAAATCATTTTTGGGAAAGTTTTAGGGACAATGCAGTCAAGTATTTCAGCAAGCTCAACCGGGAGGTAACACCATTTACAGTACTGTGATTTGTCCAACATTATGAAATATCTATTTGAGTAAACTGAATCCCCTGTACTTGAAATAGGGCCAGGGGGTCTGATCATCAATAAGTCTAAGTCACCCTGCTTCCACAGTTTCTGGGTGACTGGTCTACAATTGTTGTTGTCCCTTTTATTTTCCCAAAGGTTACGTTTGATGTGTTGTCCTGTATATCAAGCCTGTGTCATTCCACatgtatactttttttttaaataatgtaaagAGAAGACATCCTAGAGTCTAGACCAGGGGGCAAAGTACGGCCCGCCGGGCACTTCAATCCGTCCCGCGagaccccttttttctccccaatttcgtggtatccaattggtagttacatcGCTGCAATTCCGGTACAGACTCCCGTACAGGGAgtggcaaaggtcgagagccgtgcgctctccgaaacacgacccagccaagctgcactgcttcttgacacaatgcccgcttaacccggaagccagctgcaccaatgtatCAGAGGAAACGCCGAACACCTGCCGACCtcgtcagcgtgcatgcgcccggcccaccataGGAGTctctagagcacgatgggacaaggaatctcggcctgccaaaccctctcctaacccggacgatgctgggccaattgtgttccgcctcatgggtctcccagtcacggcatgctgtgacacagcctgggatcgaacccgggtctgtagtgacgtctaaTGCacagcaatgcagtgccttagaccgctgcaacaCTCTTGGGAAGCCACCGCAATTTGATTTTAACAAACAATTGGTCCCACAAGAAATGCGTCCCTCCATTGAAATTCAAAATCCCGATGTGGCCCTTGAGCCAAAAAGTTTGCGCACCCCTGGTCTAGACCTTAATTACCAGCCATTGGAAAGAATGAAGGGATTACCATTTTCTCCAACATATGCATtgttgaaataataataatagtcctAATTACTACATTCATATAACCTACAAAGCATATCTAGGTTAATTTACTCTATGGTTTAGTATGTGTGTCCAAAATAACTTTAAATGCCTTATCCCATTTACTTTGTGGAAACTGATAGGGAAACACTGAATGATTCAAATTTGACTGACAAAAACAGCCCCCCCTACACACTCTTTTTATTCACAAATATGCACAGAATTGGAAACTTCTTTGAAAAATGTGGTTGGCGTTGTAAGGCATGAAAAATGTTTTTAGCTTTGATTTCATCTATCTGGTCTTTtctgatcagtgtccaccataGGAAGGAGACAAAGAACCAATTGACGAGAACAGGTTACACTGCCTATTCTATATATGACATGGCTAAAGCTAGTAATTGGTAAGTAATGACATGGTCCTGGTTTGATGATGTAGCACTCCAGCCTGTTCTGTACTGATGTTAACGTGCTAGTCGGAACAAGGAAActcgtaaacttccgacttgctAACTAGTTGTAGTTATACATATGCCGTGTTAAACCAGTTAGCAAATCATACATTTCCGAGTTTCCTAGTTCACCTGTGGTGAGTGAAGGGTCTGTGAccatacacaacaacaacacaattcAAAGTTACTATTTATTTCTGAATTGCTGCTAATGTATATTTGGCTCAATTAAGGAATCCAATGTGTTTCTGAGTTTATCAGTCTCTCAACACCTGGTAATTAATCTGAATGCCAAAAACAATCATGGATGTAAAAATCAACACTAATAATACTAGTAGTGAAATTATGAACATTGATTCTTTGTGTTTTGATATAAAGACATGACTTGTACATATGTAGGACTTGAAAGAGTCCTTCATTTCATCCATCAATGTGTTCAGAAATGAACCTGATGTTTGCTCTAAGGTTTACAATATTGATTGATATATTAAATTGATCAATAAAAAAACTGCTTCTGTTATA

Function

NR:

description
beta-citrylglutamate synthase B-like

GO: NA

KEGG:

id description
K18311 RIMKLA, NAAGS-II; N-acetylaspartylglutamate/N-acetylaspartylglutamylglutamate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565612.2 True 7013 mRNA 0.45 5 32056948 32096133
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110491820 LOC106567387 coding downstream 67152 31966722 ~ 31989796 (-)
ttc34 ttc34 coding downstream 98946 31950519 ~ 31958002 (-)
si:ch211-28p3.4 LOC106579421 coding downstream 328005 31712301 ~ 31728943 (-)
LOC110491813 LOC106579422 coding downstream 560648 31474791 ~ 31496300 (-)
LOC110491807 LOC106576884 coding downstream 594703 31314091 ~ 31462245 (-)
LOC110491825 LOC100380856 coding upstream 134154 32230287 ~ 32350853 (-)
pigt LOC106567380 coding upstream 340094 32436227 ~ 32466311 (-)
LOC110491830 LOC106567378 coding upstream 522615 32618748 ~ 32628980 (-)
LOC110491831 LOC106567377 coding upstream 540413 32636546 ~ 32735446 (-)
LOC110491834 NA coding upstream 872711 32968844 ~ 32970270 (-)
G1364341 NA non-coding downstream 394 32054609 ~ 32056554 (-)
G1364366 NA non-coding downstream 11855 32044591 ~ 32045093 (-)
G1364358 NA non-coding downstream 24258 32032351 ~ 32032690 (-)
G1364357 NA non-coding downstream 24718 32031894 ~ 32032230 (-)
G1364347 LOC106581475 non-coding downstream 39301 32017413 ~ 32017647 (-)
G1364424 NA non-coding upstream 43005 32139138 ~ 32191970 (-)
G1364465 NA non-coding upstream 100289 32196422 ~ 32196717 (-)
G1364475 NA non-coding upstream 106001 32202134 ~ 32202363 (-)
G1364504 NA non-coding upstream 125698 32221831 ~ 32223847 (-)
G1364736 NA non-coding upstream 285089 32381222 ~ 32381591 (-)
G1364348 NA other downstream 37450 32018794 ~ 32019498 (-)
G1364105 NA other downstream 170836 31885749 ~ 31886112 (-)
G1363836 NA other downstream 406251 31639437 ~ 31650697 (-)
G1361619 NA other downstream 2131794 29923871 ~ 29925154 (-)
G1361290 NA other downstream 2559393 29497113 ~ 29497555 (-)
G1365099 NA other upstream 538332 32634465 ~ 32635511 (-)
G1366703 NA other upstream 1587878 33684011 ~ 33684473 (-)
G1366756 NA other upstream 1651267 33747400 ~ 33751407 (-)
LOC110491043 NA other upstream 1767373 33863087 ~ 33870055 (-)
LOC110491862 tnfrsf6b other upstream 2981968 35077807 ~ 35079706 (-)

Expression

LOC110491822(LOC106567384) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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LOC110491822(LOC106567384) Expression in each Bioproject

Bar chart with 21 bars.
LOC110491822(LOC106567384) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network