LOC110491830 (LOC106567378)


Basic Information

Item Value
gene id LOC110491830
gene name LOC106567378
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 32618748 ~ 32628980 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565621.2
CCCCTCCTCCACTCccgacacactcacactctctctcccttgccctgtgcctgtctctctccattctaCCAAGCAGCCAGCCAGACCTCTCTTCTTCTGCCCTGTCGACATCCCACGCCTTTCTCCCTCAGCCTCAGCCGTGGCCGTCTGCCCTCGCCGCCTCTGACGGTCCAAGTCTATCTACAACAAGTTCCCTGGGACTTTTTCAGAAACTTTTTCCTCAAttacttttttctttttttgctacCTCCCTTGAGACTCCAGTGCGGGTTGTGCTGTGTGTGATAGGGGCTAGTGTTGCTCTTCGCCCTCGGGGTCTCTGTACGCTGTTGACCGGAGGAGAAGACTACTTGTCACCATGATCAAAGTTCAGCTGCTGCTCTTGCTGGGCCTGGTCGGCCCCTTCTGTGCCGTCGCACACGCAAGCACACTGGTGACCCCATTAGAAAGGGTGTTGGATACCCCTGCTGCCACCGATATCCTCGAAGGCGCCACCGATGCCCCCACGGCTGAACCCAATGCTGCGGACGATGAGGTCATAACGAAAGCCCCTGCCACCGATAAACCCGTCACTACTCAGGTCGATGAGGCTGCCCCGAATGTGACAGAGGCCGCTCCCACGGAGACCGAGGCCACTGAGGCTGCCGGGCAGGAGGCGGCCACAATGGAGGCCCCTGCTGTTGCCACCATGACCCCGGCGAATCCCGAAGCCACGGCAGCTGCAGAGGCTGATGAGGAGGagttggtggtggaggaggAGGGCACTGGCTCTGGACAAGTGGTGGGTATTGTGATTGGCGCATTGGTGGCAGTGATCATTGTCATCGCCGTGGTGATCGCCTTGGTGAGGAGAATGGGCAAATACTCCCCCTGAGGAGAAAGGCTGCAAGACAGGAAGTCCCAAAAAAGTTCTCGCAATTCTGAACTGCTGAACTACGTAATTTCCTGTCATTAAACAAGCATGCTACCAGCACGAACCTAACCAAGATCTTGTACTGTTGCCAAAAGGAGGGGGAGGTGTGGGGGGGAGAAGAATGTTTCTCCCCCAACCCCCAGACAGAGCCATTGATATCAATGGTCCTGCCCAACCACACAGCAACCCTCCACGCTAATATCCAAACAGGGGGGTGACCCACCCCCCCACTGACATCCATAGTGACCCACAGGAAGTCAGTGAATTTCAGGATTTTTTGTAAAAAGAAAGGAAGTAAGGGATTATTTAACTTGTAGTAGAAAATGCTCTCTCTTATGCAGTGGTGTGTACATTAATTCCAATTTGCATTTGAGTTGAAGACGACCTAGAAACACGACACAAAATAAAcagaaaattaaaataaaaagttGACTACAGAGGGGGGAAATGGCGGAAGAGAATGTGGTGAATTTAATAGGGTGTATATACCATGAAAAGGGACTACAGTTATTTCTTGATCATATGTTGCAGTTGCTCACTATAGCATTGAGTTAATGGGACATTGGAAAGCAGCCAAAAACATCCACATAGTACATAGTATCTCACCTTAACACCTAGCCAATGAGTCCCTACCTACCAAAATGTTCAACAACTATATGAAGCACTGTATGCAGAAGTTGTTTCGACATTGTGCTCATGTTCTGAGGGTTAGCAAGGGGCTAATGAAAAGACGCCTCATTTGCAAGTGTAACGTGACATTCTGCCAGCTTTAACACTGACATAAAAACCTAATACACATCTGTGAAATTTTGCAGAAGGGTTTGTGCCACTGTCTCTGGTATTCCCTGGATAGTTTGGAGATTTTACTTTTAAAGTGCATTAATGTGAATGGACTGTACTTTAACTGTCACCCATTCCATTAGGACAGCTTTGACGACTTCAGGTTTTCACAAAATCATGTGTTCCGTATACAGGTAGAAGTCATCAGCCCCCATTCTGCTAGCATTGTCCTTTACAATGTATTCTCTGTACTTCTGCTTACTTTAGTTTGGATAGAGTATACCAAGCAAGCACACACAATCTTTAAATACAGGTTCCCCCCTGAATGCATGCAAAGGATGTTTAGACTTTCATGGTTGCACCCAGTTTTAGGCACATTTTCTTCATAATCGTTAGTGGACATTGAATCATTTTTACACCCATTAGTCTCAGCTTAGCTCCGCTTGCTTTAAGAACTCTGTTAATAAGTGCACTGAATGAGTGATGACAATTGTTTAATGGATCCGCTTTAGACACTGCAATCGTTTGCAACGATGTTTGTTTTCTGCTTTTGCTCCATATTATCAAATCTAGGTCTTTCATTTTATTGTCAGATTTGTCCTTTTATTTAATTGCAGTGTTTTTGTTCATACTGTTTCAATAAACAAGTGAAAACACTCCAAAATACA

Function

NR:

description
uncharacterized protein LOC110491830

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565621.2 True 2361 mRNA 0.47 4 32618748 32628980

Neighbor

gene id symbol gene type direction distance location
pigt LOC106567380 coding downstream 152437 32436227 ~ 32466311 (-)
LOC110491825 LOC100380856 coding downstream 267895 32230287 ~ 32350853 (-)
LOC110491822 LOC106567384 coding downstream 522615 32056948 ~ 32096133 (-)
LOC110491823 NA coding downstream 531962 32081707 ~ 32086786 (-)
LOC110491820 LOC106567387 coding downstream 628952 31966722 ~ 31989796 (-)
LOC110491831 LOC106567377 coding upstream 7566 32636546 ~ 32735446 (-)
LOC110491834 NA coding upstream 339864 32968844 ~ 32970270 (-)
LOC110491838 LOC106567371 coding upstream 564556 33193536 ~ 33195476 (-)
LOC118939522 LOC106572132 coding upstream 742396 33371376 ~ 33416495 (-)
LOC110491041 LOC106572132 coding upstream 790442 33419422 ~ 33483836 (-)
G1365135 NA non-coding downstream 10560 32607910 ~ 32608188 (-)
G1365134 LOC106613263 non-coding downstream 11083 32607393 ~ 32607665 (-)
G1365133 NA non-coding downstream 11446 32607098 ~ 32607302 (-)
G1365125 NA non-coding downstream 20697 32597729 ~ 32598051 (-)
G1365124 NA non-coding downstream 22383 32596118 ~ 32596365 (-)
G1365154 NA non-coding upstream 4496 32633476 ~ 32633705 (-)
G1365182 NA non-coding upstream 51348 32680328 ~ 32680547 (-)
G1365184 NA non-coding upstream 53440 32682420 ~ 32682633 (-)
G1365238 NA non-coding upstream 115294 32744274 ~ 32744756 (-)
G1365668 NA non-coding upstream 274756 32903736 ~ 32903953 (-)
G1364348 NA other downstream 599250 32018794 ~ 32019498 (-)
G1364105 NA other downstream 732636 31885749 ~ 31886112 (-)
G1363836 NA other downstream 968051 31639437 ~ 31650697 (-)
G1361619 NA other downstream 2693594 29923871 ~ 29925154 (-)
G1361290 NA other downstream 3121193 29497113 ~ 29497555 (-)
G1365099 NA other upstream 5485 32634465 ~ 32635511 (-)
G1366703 NA other upstream 1055031 33684011 ~ 33684473 (-)
G1366756 NA other upstream 1118420 33747400 ~ 33751407 (-)
LOC110491043 NA other upstream 1234526 33863087 ~ 33870055 (-)
LOC110491862 tnfrsf6b other upstream 2449121 35077807 ~ 35079706 (-)

Expression


Co-expression Network