LOC110491838 (LOC106567371)


Basic Information

Item Value
gene id LOC110491838
gene name LOC106567371
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 33193536 ~ 33195476 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565631.2
GGGTTTCACACGAACTGGGAGCATGCGAACCACCTATAAGTACCGCCGGCGTGTGTCGGCCGTAGAGCAGACGCAACCTGCCCGACAGAGCCTGAACCCAAGCACGTTCTTATACTCCAATGACAGTTCGGTGATAACAAGTGATATAGCTGATCAGTGGGACTTGCTCACGTCTGCGTGACTATCGTAGGATATCCTTCGCACGGGTTACGATTTGATCTAAACATAAAGGCGCAGTGATATTGCAACTTTTTTCCACCTTTTCCAACTTCTCCAAAAGGATATACCTTTTCTATAATTTAATCCAAAATGCCAGCCGACACCATGGAGAAGCAAACGGCATCCCCTATTGCTGGTGCCCCTGCAAATGGATCCCATACTCCAGACAAACCTAAGAATGCCAGCGAGCATAGAAAGTCCTCAAAGCCCATCATGGAGAAACGTCGGAGAGCGCGGATAAACGAAAGCCTTGGCCAACTCAAGACACTTATTCTCGATGCACTTAAAAAAGATAGTTCCAGACATTCAAAATTGGAGAAAGCCGATATTCTGGAGATGACAGTGAAGCACTTACGAAATTTACAGCGTGTGCAGATGACTGCGCTGTCAGCAGACACTACCGTCCTCAGTAAATACCGGGCGGGATTCAACGAATGCATGAACGAGGTCACTCGCTTCTTATCAACCAGCGAAGGGGTGAACACGGAGGTGCGGTCGCGGCTTCTCAACCACCTGTCTGGCTGCCTAGGGCAGTTGATCGCCATGAACTACCCCCAGCCAAACCCAAATCAACAGGCTCACCTCGCGCAGCCCCTTCACGTACAGCTACCCTCTACCTTGCCCAACAGTGCCTCTATGGGCTCCAAACTCAGCCCCACCGAGGAAATGTCACCTAAAGTCTTCAGCGGGTTCCAGCTTGTGCCCGCCACCGATGGACAGTTTGCTTTCCTGATTCCCAACCCTTCTTTCGCCTCAGCATCAACCCCAGTCATCCCTCTGTATGCTAACGCAGGTGTGCTGTCACAGACAGTCAACGCCAGCCCTGTCCATGGCAGCTCTGTGCCAGTAGTGGGATCCCCTGTCCATGGGATGACATCATTCATCGGTGTGCCTCAGGCGGTCAGCCCTGTCGGTGTCTGCACTGGTTTGGAGAGCACTGAGCCTGTTTGGCGACCCTGGTAGTTTGGTTGAAGTGGACACTACAATAAAGAAGGTTATTTTTATGAAGTAAATAGTTCCGTTCTAGGGGACATCATTTCCTTTGTTGGGCATGGTAAAAGTGTGTTTATTTATTGGCTGATTCCAACATTTGGATGTTGGTGATAAATATTGTGTCCATGCAATGGAAGATTTATTCAAATGTTTGTGATTAAGTACTTTTTATGGAACGATTTAGTTTTGTACAAAGTTGATATTGATTGTTATACCAAAGCTGTGTGTTTTTATATTGTTTGTCGTTTTATGTTTGGAAATTGAAGTTTGGCAATTGACCTAATAAATCAGTTTGAATAATTCAGAAA

Function

NR:

description
transcription factor HES-4-B-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0050768 negative regulation of neurogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565631.2 True 1520 mRNA 0.47 4 33193536 33195476

Neighbor

gene id symbol gene type direction distance location
LOC110491834 NA coding downstream 223266 32968844 ~ 32970270 (-)
LOC110491831 LOC106567377 coding downstream 458090 32636546 ~ 32735446 (-)
LOC110491830 LOC106567378 coding downstream 564556 32618748 ~ 32628980 (-)
pigt LOC106567380 coding downstream 727225 32436227 ~ 32466311 (-)
LOC110491825 LOC100380856 coding downstream 842683 32230287 ~ 32350853 (-)
LOC118939522 LOC106572132 coding upstream 175900 33371376 ~ 33416495 (-)
LOC110491041 LOC106572132 coding upstream 223946 33419422 ~ 33483836 (-)
LOC118939523 NA coding upstream 288644 33484120 ~ 33531347 (-)
clcn6 clcn6 coding upstream 457181 33652657 ~ 33681243 (-)
LOC110491843 LOC106567362 coding upstream 576849 33772325 ~ 33862653 (-)
G1365700 LOC106572137 non-coding downstream 187228 33005663 ~ 33006308 (-)
G1365739 NA non-coding downstream 188837 33004368 ~ 33004699 (-)
G1365675 LOC106567373 non-coding downstream 190492 33002821 ~ 33003044 (-)
G1365677 NA non-coding downstream 191453 33001791 ~ 33002083 (-)
G1365676 NA non-coding downstream 193789 32999432 ~ 32999747 (-)
G1365910 NA non-coding upstream 70539 33266015 ~ 33266230 (-)
G1365921 NA non-coding upstream 78249 33273725 ~ 33274150 (-)
G1366040 LOC100136213 non-coding upstream 156060 33351536 ~ 33353507 (-)
G1366187 NA non-coding upstream 172116 33367592 ~ 33368160 (-)
G1366252 NA non-coding upstream 309680 33505156 ~ 33505388 (-)
G1365099 NA other downstream 558025 32634465 ~ 32635511 (-)
G1364348 NA other downstream 1174038 32018794 ~ 32019498 (-)
G1364105 NA other downstream 1307424 31885749 ~ 31886112 (-)
G1363836 NA other downstream 1542839 31639437 ~ 31650697 (-)
G1361619 NA other downstream 3268382 29923871 ~ 29925154 (-)
G1366703 NA other upstream 488535 33684011 ~ 33684473 (-)
G1366756 NA other upstream 551924 33747400 ~ 33751407 (-)
LOC110491043 NA other upstream 668030 33863087 ~ 33870055 (-)
LOC110491862 tnfrsf6b other upstream 1882625 35077807 ~ 35079706 (-)
G1369101 NA other upstream 2552500 35747976 ~ 35780436 (-)

Expression


Co-expression Network