XLOC_003238 (BX005472.1)


Basic Information

Item Value
gene id XLOC_003238
gene name BX005472.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 9898513 ~ 9898630 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006384
ttaaacatgccaTATCTCCcagcagcccaagaccggttacttattgaagctaagcagggctgagcctggtcagtacctttATGAGCGACCACaagggaaaactaggttgctgttagaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000088199

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006384 True 118 rRNA 0.47 1 9898513 9898630

Neighbor

gene id symbol gene type direction distance location
XLOC_003237 NA coding upstream 295443 9601745 ~ 9603070 (+)
XLOC_003236 CABZ01079837.1 coding upstream 376440 9511533 ~ 9522073 (+)
XLOC_003233 tbl1xr1a coding upstream 1216066 8565323 ~ 8682447 (+)
XLOC_003235 NA coding upstream 1220793 8675969 ~ 8677720 (+)
XLOC_003234 CR847563.1 coding upstream 1317956 8578054 ~ 8580557 (+)
XLOC_003239 CT990625.1 coding downstream 636826 10535456 ~ 10537403 (+)
XLOC_003240 b3gnt5a coding downstream 642628 10541258 ~ 10550377 (+)
XLOC_003241 NA coding downstream 770505 10669135 ~ 10673008 (+)
XLOC_003242 rbms1a coding downstream 1010553 10909183 ~ 10960394 (+)
XLOC_003243 itgb6 coding downstream 1076382 10975012 ~ 11020857 (+)
XLOC_003250 BX324177.11 misc downstream 1447173 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 1474256 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 1487732 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 1519403 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 1530763 11429393 ~ 11429689 (+)
XLOC_003229 NA non-coding upstream 1927483 7880142 ~ 7971030 (+)
XLOC_003252 BX324177.5 non-coding downstream 1454829 11353459 ~ 11380887 (+)
XLOC_003253 NA non-coding downstream 1460791 11359421 ~ 11359715 (+)
XLOC_003268 NA non-coding downstream 1605384 11504014 ~ 11513985 (+)

Expression


Co-expression Network