LOC110491843 (LOC106567362)


Basic Information

Item Value
gene id LOC110491843
gene name LOC106567362
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 33772325 ~ 33862653 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945771.1
TTGATATAGGAAGTCCCAGCCAATTTACAAGTGTGTAGTCTGTGTTTTTAATAATCTGCCTCTGATCCGCTTAGTGGGGGGTGCCATGTGTTCACCAGGCAGCAGTAGACAATCTGTGCTTTTAAGGCAATAGAACCGTGAACGAACGCTGAATAGATGACAGTTTATGAATGGCTTGGCATTCCCAGAGAGGTCAGGGGAGGCAGTCTGAGGGATTGTCTCAAAGAAAGTACGTGCCCAGGAGGCCCCTGGTCCAAagaaacctgtctgtctgtggggagAATGAAGTGGACCAGTTACTAGACCTCCTTTCTACTCTCAACGAAGATAGGCCTCCCTACTTAAGTGTCTCTGATGAGGTGCTGGACAGGCACACATCTGAGCCTGTCTTGAGACCGAGAAACCTGAGCCGCAACACTGAACGTGGTCCTGCTTGGAGTGCCAAGCTTGGGAAGTTGTCCCATCAGGGAAGTGAGGAGAAAGGGTCAGAGGTCAATTTGACTGACAGGGATATCCTTGTTCCTATTCGGTTACAAGGGGGTGCTTCATTGACCTCTGGTCATCCTTATGGCTCAATTGCGGGTCGAGGTGATGGTGGCAACTGTGTCAATTGGCTTGGGAAATGGGGCAGGGGACGTCAACAGCCAGTGGAGAGAGAATGTGTCTCTTTTGTCCAAAAATGCAACAGCGGTTCACTAGGTTCTACCTTTCCCGGAGATGCTCCTTTCTACCCTGAAGTCCTCGACATGCTAGACAGGCGTCAGGGGGAACATGTAAAGCCTGCCTGTCCGAAGCAGAATGAAAACGTGTCAACATTCCAGGATCTACTAGAGTCCTCCTGGAGATCTGCGAGCTTGCATAGGTCAATGTTGGATCTGGAGATCGGCTTATCATTTGTGGATCTAGGCCTACTACCCCAGGCACTGAATACCTCTGGAGACTTGGCCTTATCTCCTCTGAATCTTGGATCTCCTTTAGATCACGAATCTCATGGGCCTAGGCCCTCTATCTCTTGCAATGCAAAAATGTCATGCTCCATCATCCACTGTCACAAAGGGGGCAGAAGGTGTTCTACCAGCAAGGATGGGTCTTCCACAAGTCTATATAAGGCTAACAGGGAAACCGAGTTCTCTGAACTCCATCTTCAAAGCGAAATCGCAAAGAATGCTGGACAACAATCAACAAACATCCATTCTCCTAGTGTATCAGTGAAGGCACACATTAAACCATGGAGGAAAGCTGAAAGAAAGGCAGAAAAGAAGACTCATGTTTTTGCGTCGGCCATGCGTGGCTCAGATTGCCTCTCTCAGTATAGCTTCAGCGGTAGACAAAACAGCACAGAGTACCCTGAGCATAATACAAAATGGTCCAATGAATTCTCAGGTCAAGCTAAGTCAGATTCAGTGGGCACTGTGCATAGGTTTTACCCTACTTTAAAAGGGGTGGAGGATTTGTTTGAGGTGCCGAGAGTCACAACAAGTAATCCAGCTGTGTCACATTCTCTCTTGTGGGAAGAAAGACTTGGAATCACTAAGAATTTGGGTCAAATTACCCTCtcggacagagagagggcagCTCACCTGAAGCGAAGCACTCCGAATGCGCCAAGCCAATACAACAGAGAggacctctctctgctcctccatagCCATGGCAGAAGAACTCCTGGGTCAACTACTCCTGAAAGGCAATGTCAGATCGACCCATTAGTtacaacacacacaggcacattgcATACATTGACAGGAGGTGCCAGTGGTGAATTTCTGGGTGAAAGAAATCTGTCTGCAGTTCATCAGTCCTTGCCTATGCCTATTGACGCAGTAGAGATTCATAGCCCCAGTCTTGTGGAGACAATAGAGGACAGCAGGTGGCTGGCACTCTACAGATTCAGACTGCAGTTGCGCTGCTTCAGGACATGGGACCATCAGTGGAGGTCACACACACGGGCCAGACTCCAGCACCGGAGACACATCCTGAGGACCGGCCTCTCTGCCCTGAGGTGGGCTGTGGTGACCCGACGTGCCCAGACAGACACCCTTGCCAGGAGGACGGATGCCCTGACCCTCGCCCACTGTTTCCATCGGtggaggaggtgtgtggGACAGATGCGTTGTCTCAACGTGAGCCCTGGCTCTATGCGGGGTGACATTGGGGTCGTGTGCCTGCTGAGGAGACTGACCCAGCCCAGCAACACCCTGGTCCTGAGGACGGCCTACTGTGCCTGGAGGAGCCACATCCAGGGCATGCAGCTCGGCAGGGCATCGCTCATACACTAccaTCTGACTCTGCTGTGTAAGCACTGGCTGGTGTGGAGGCAGGCTGGTGTGAGGCTGCAGGTGTGGGCGCTGCAAGCCCAGAGGGCAGCCCTCCACTGGGACCACAGGCAGCAGAGTCGGGCCTACGCCTTGTGGAGAGCTGCCTGGGTCACGGCACGTCTGGCCACTGAACAGCACAGGGCGTCCTGCCTAGCTGCAGCCTGGAGTGTGTGGGCGGCCCGGGCtacacagagggaggaggagcgaCCTGCTAGGGCCAATCAGAGTGCTGGCTTCCACAGGAGGAGCCTACTGCAGCACAGCCTTCTGCTGTGgctagagagagcagagcagagaagacGACAGAGGGATAGGCTGCAACGCATCGTCAGgAGGGTTGCCCAGCGCTGGCGCGAGCACACACACGGAGCCCGGTTGCAGCGCGTGTGTGTCGAGGCCGAACAGGTGCTCTCCAGACAAATTTTAGCAgTGGCCTTTGGGAGGTGGCACCAGGAGTTTGCCCGGGCAGACTGCGGGCACAGACTGGTGCAGAGGTGGCACCACCTGCTGGAGTGGAGGAGGCTGCAGGAGGCGTTTACATCCTGGAACCGCAGGGTCCTGGTCAGGAGAGGGGCCCTAGAGATACAGGAGAGAAGGCAACGGGCACAGCTCTCACACATCCTGCGTGGCTGGCGGGGTGTGGCCGAGCGAAGGGCGGCGTGCGTGTGTTACTGCAGCGAGAGGAATGATCGGATGGCCGCACACACCCTGCAGAGCTGGAGGAGAGCCACAGCGCTACGGTCCCGACACACACGCCTCCTCACACacctgctggagaggaggaggacacagGCGCTGACCCTAGGGACACTGACAGGGAATATGAGGCCGAGTGAGGCGGTGACGCCAAGGTTGTATGGTGGTGCCAGGCTCATCACATTGGAGGAGTTGTGTGACAACCTGCAGCTCCAGGCAAGCCTTCACTcctggaggagggagaagagcaaGCTCCAGCTAGCCAGACTGTACTGTGTGGCCCGGGCAAGGGTGCAGGTGAGATTGGCGCTGCAGCGTTGGCATGAGCTGGCGTGGGATTCCCAGGCCTGCAGGGTGCACAGGTTCAGGACTAGACTGGCAGCGCTGGAATCCTCTTCCTCTGGGTTCGGCagcacctctcccctctccctgaaGCTTGCTGTGGCAGAGCATAACATCAGCACGGAGCTCAGCGATTGGTCAAACAGCTCCTCTTCAGCACAGATGGACAGAGGACGCCCCCTACTGGCCTCATCCCCATTGGAAAGTCTCAAGACCTGCTTCCAGGTCGAGAACCATGTTGATTTTGCAGAGGGTGACCTAACCTTCTGCCTCTCGCATCAAAGTCTCCCAGATCACAAGAGCTCACCCAGATTAAAGGGTGTCATGAGGAGTGTGGTGGGCCGGATGCTACGTCCCTCCCTCAGTGTGGCCTTCTCTCAGTGGAGGGACTATGTCAGAGTCGGCAGGGAGCAGCGACGCCTCATGGGCCTGATGGCAGATGTCCGCAGACGGGCCATGCTTGGCACCGCCCTCAGCCTGTGGAGGAGACACACCCAGAGCCTCAGCACCGCAGCCATACAGATGGAAACTGCAATTCTGACTTTCTCTGTGGCTCACTGGAAAAGGGTGGTCGCTCAAAGGTCAAAGGTCACCCTGCAGAGGATGGCCGACGACTTCCACACCACGGCAGTCCTCAGGAGCTGCTTCTTAACATGGAAGAAAAAGcggACGTTGATTAGAGTAAGGCCAGACCCGGAGGCCCGGGCCCAGCTGGTGAAGAGGGCGGTGTGGctgcggaggagaggagagagacagaggacccaCAGCACCTTCACCCTCTGGACAGCACGCCTCAGACAAAGCCAGGCCGTCACCGccttctacacacacaccacactcaccaGGGTGTTTACGGCGTGGGAGCAATGTGTCCACTCCCAGAGGGAGATGAGCGCTCTAGCCTGGGCCCACCTCCACCAGAGGCTGCTTGGCCAAGCCCTGGCCCACTGGAGGGGGTCTGCCACCCGCAGCCTTGAGTTCCGCAGGAGAGGCCAGGAGAGACTGGCGCTGGGGGCCAGACAGAATCTGCAGCGCTGGAGAGATCATACCCACAGGATGTGTGAGCTGAGACAGCTACTGGGTCAGTATgtggagagtgagagaagggcaGCGAAGAGGAGAGCTCTACACACCTGGGTCCAGGCCACTGTGAATGTCAGGAAAGCCCAAGACGTACACCAGCAGGCTTTCATGAGCAGACTACTGCAGCGATGGCACACCCAAGCCCAACGCAGCGCCAGAGAGCAGAGTGCCATCATAGCCATGAAGACGCAGAGGCACAGAAGAACACTGCTTGCGGCTTTTACTTCCTGGAAGGAGCGTTTCCTCTACCAGCAGAGCTTAGCCAGGGCAGCAGCACGCCACTGGAGACAGAGGGCACTCGAAAGCAAGGCAGCCAGCCACCGCGTCACCTGTCTGACCTGGTATTCCTTCACCCGGTGGAGATGGGCGCTgcacagacggagagacagGTGCCAGCGGGCGAGGGTGCTGAGCAGGGAGTGGGCGCGGCGCGCCAAGCAGAGCGTGGATGACCAGGAGAGGGCGACGGAGCTCCTTcagcagagacagaggagagacgtCGCAGAGAGGTTCTACTACTGGATCACAGCCCATCAGTCCTCACTGACCAGTTTGGTATTCCACAACCAGACTCTGTGCAAGAGGGTTTTCCAGAGCTGGCAAGCCTACACCGGCCCTGCACTAGCACGTAAGCACAAAGGTGCCAGGTTCCATCTTGGCAGAGCCAGGAGGCTGGTGGCCCTGTGTTTTACCCACTGGAGGAGTGAGCTGGAGCAGGCTCGAAACAGACTGAAGGTCCTGGAGCAGAGACTGAAACACATACACTTCAAACTCACTGCTGTCACCATGAACCACTGGAGAACGGCCACTAGAGGGTGCATAGCGCTCAAACACTTCAACAGAGGGACAAAACGTCAGtgTTTTGATTACTGGAGGGAGAGGACGCGCACATCCAGAGCAGTCACTATACTgtgtgtacagagagagaggagaggggcacgTGAAGTTCTGCTATGCTGGTGGAAGTGGACTAAAGAGTCTAGATGCCAGAGGCAGATGGAGGAGGCAGTGTGGCTGTGGCTGGAGGGCCGCAGAGTGACCAGAGCCTTCCAACTGTGGCTCAGAGTCCACCATCGCCACCAAGAGGCCTCACGGCTGGGACGGGCTCACCTAATGCGCAGGTCTTTTCGGATCTGGCGAAGGGTAGTGACGGAGAGCCTGTCAACTTTTCAGACGGCGGAGTCACGGCTACGCACCCACCAGACCCAATCAGCTTTCAGTGTCTGGAGGAGGCGCACCGTGTCCCATAATCTCTTAAGTGACCTGGTCCAGAGAACAAAATCCAGGCAGAGGAGTCGTCTGCTGAGATCATCACTCCACACCTGGCACCAAGAGGTCCAGTTGCATAAAAGACGATCTCTACACCTCTCACAGAAGTACTTTGCCTGTTGGGTGAACAGAATTGGCATCAGACGCATTGAAAGGAAGAATCAGTTGGAGGCTAGACTGAGGGAGTGTCTACGGCGGTGGCGTTTAGGTGTGCTGCTGAAAAGAGCTAGGAGGAGACTCACCCAGGTGTTGTGGGTCAGCTGGAGAGACCAGACCGCTGCTGCACTCCTACTCAAGACCCTGCACACTGACCGACTGCAGCAGGGGGCGTGGCTGACATGGAGGAAGAGACGCATCAGAACCCGGGTGTCTGAGACCTTTGCCGCGCAACTGGACCAAGCCCTCATTGCGCAGGTGTTCAACATGTGGCGGCAGAAGCATGCTCTTCGCTCCACAGCGACCGACAAGTGACCTACGGTATAGGGAGAAGTAGCTGTCCTCTGCTCCGTCAACCCTTGACCTCGTCCCCCCAACTCCTAGCCCCTATATGGTAGGGGAGATCACGAGTAGTGTGTGGCTTTTCACCATACTACCAGTACAGCACTTCATATttcaaaatacagtgccttgcgaaagtattcagccctcttgaactttgcgaccttttgccac

Function

NR:

description
PREDICTED: uncharacterized protein LOC106567362

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945771.1 True 6380 mRNA 0.56 28 33772325 33862653

Neighbor

gene id symbol gene type direction distance location
clcn6 clcn6 coding downstream 91082 33652657 ~ 33681243 (-)
LOC118939523 NA coding downstream 240978 33484120 ~ 33531347 (-)
LOC110491041 LOC106572132 coding downstream 288489 33419422 ~ 33483836 (-)
LOC118939522 LOC106572132 coding downstream 355830 33371376 ~ 33416495 (-)
LOC110491838 LOC106567371 coding downstream 576849 33193536 ~ 33195476 (-)
LOC110491043 NA coding upstream 434 33863087 ~ 33870055 (-)
skia ski coding upstream 485276 34347929 ~ 34429211 (-)
LOC110491852 prkcz coding upstream 591414 34454067 ~ 34596158 (-)
LOC110491856 LOC106566938 coding upstream 908173 34770826 ~ 34796155 (-)
LOC110491859 LOC106566941 coding upstream 983831 34846484 ~ 34880904 (-)
G1366765 NA non-coding downstream 6222 33765868 ~ 33766103 (-)
G1366762 NA non-coding downstream 8574 33763457 ~ 33763751 (-)
G1366761 NA non-coding downstream 10729 33761267 ~ 33761596 (-)
G1366760 NA non-coding downstream 12052 33760039 ~ 33760273 (-)
G1366759 NA non-coding downstream 12418 33759473 ~ 33759907 (-)
G1366861 NA non-coding upstream 52604 33915257 ~ 33915565 (-)
G1366863 NA non-coding upstream 54398 33917051 ~ 33917355 (-)
G1366867 NA non-coding upstream 60259 33922912 ~ 33923113 (-)
G1366880 NA non-coding upstream 77789 33940442 ~ 33940747 (-)
G1366756 NA other downstream 20918 33747400 ~ 33751407 (-)
G1366703 NA other downstream 87852 33684011 ~ 33684473 (-)
G1365099 NA other downstream 1136814 32634465 ~ 32635511 (-)
G1364348 NA other downstream 1752827 32018794 ~ 32019498 (-)
G1364105 NA other downstream 1886213 31885749 ~ 31886112 (-)
LOC110491862 tnfrsf6b other upstream 1215448 35077807 ~ 35079706 (-)
G1369101 NA other upstream 1885323 35747976 ~ 35780436 (-)
G1369107 NA other upstream 1886204 35748857 ~ 35752941 (-)
LOC110491868 LOC106566949 other upstream 1940415 35474174 ~ 35994010 (-)

Expression


Co-expression Network