skia (ski)


Basic Information

Item Value
gene id skia
gene name ski
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 34347929 ~ 34429211 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565658.2
gagagagagagagagagagagagggcaagtgagtgagtgagcgagtgagcgCAACCCAGCTCACAGACTATCCATCTCCACACAGGCGTAGCGAACTGCGTGGGTAAACGGAGTGTTTGCATCGGGCTCTACTGCAGTATTTCAAACTGATTTTTGTATGTGTTTTACACCTGTTACATAGAGAGAAGGCTTTGCTTTATCGGTCGATACTTTTTCTGGAACTTCAAAAGCGTACCTTTCCTTTTTGGAGGAGTTTCAGAGGGACGCGTTTTAGATATGGACAGTCGGGAGTCTACTGCATGGGAAGACTCGCCGGTGTCACCATTTGCCTAGTAGGTTCCTAGTCAACGGAATTGGAAACTCACTACCTGGGACTTTGTTGTGGATGTTTGATGAAGCGCTTTCCGCACTTGGCTAATTCTGGGATACCTTGGATTTACAAGGAACCGGGACCTATCGTGTCTTTCGATTGTTTTAGTTTTCCCCAGTTGAAAGGAACTCTCGCTTTCAAAGTCGTAGTGAAAACATGGAGACTGTAACTCGACAAAGCTTCCAACCTCACCCAGGACTGCAACAAACTCTCAAACAGTTTCATCTGAGTTCTATGAGCTCCCTCGGCGGACCGGCGGCTTTTTCTGCTCGATGGCCACATGACCTCCTGTTCAAGAAGGATGGGAAAGAGCCCGAGCCCGTGCTGCATCTGCCCATGCAGCCACCGACAGTGATGCCGGGGCCTCTCTTCATCCCGTCCGACCGCTCCACTGAGAGGTGCGAGACGGTCTTGGAGACGGAGACTGTCTCCTGTTTCGTGGTCGGCGGCGAGAAACGTCTTTGCTTGCCGCAGATCCTTAACACCGTCCTTCGGGATTTCTCCCTCCAGCAGATCAACTCGGTGTGCGACGACCTCCACATCTACTGCTCCAGGTGCACCGCGGAACAGCTGGAAATCCTCAAAGTCATGGGGATTCTTCCATTCTCCGCGCCTTCCTGCGGACTCATAACCAAAACTGACGCGGAGCGCCTGTGCAATGCCCTGATTTACGGGGGCACCTACCCTCCGCACTGCAAGAAAGAGTTTTCTGGCTCCCTGGAGCTGGAGATCACGGAGAGAAGCTTCAAAATATACCACGAATGTTTCGGAAAGTGCAAGGGTCTCTTCGTCCCGGAGCTGTACACCAGCCCCAACGCAGCCTGCATCCAGTGCATGTACTGCAGACTCATGTACCCGACCCATAAGTTCGTGGTGCACAGTCACAAATCGTTGGAAAACAGGACTTGCCACTGGGGCTTTGACTCCGCCAACTGGAGGGCATACGTCCTCTTGGGCCAGGATTACACGGGGAAAGAGGAGAAGGCGCGCCTGGAGCAGCATTTGGACGAGATTAAAGAGAAATTTGACTTCGCCAACAAATATAAGAGGAAAGCATCAAGGGCATCAGATCCCATCCCAGCCAAGAAGTCTAAACATGAAGACTTCCCATCGCTGCCCCTGTCCGCTGAGAAAGAGAAGCAACCCGATTGGTTAAGATCCCTCTCGGCTTCAGACAATACGGGGCTCAACTGCATCCAGCCCAGACAGAGACCCTCGGCTTTCAGGCCCTGGTCCCCTAATCTCTCGGCTGGGGACAAAGAGACGCCCAACCGCCCTCTGGCTGCACTGAGAGACAGcTTCTACAACTTCAAGACGATGGAGAGTGCCGTGGCCCCAAACGTTGCCCTCACACCCCTCCCCCCGGCAAAGGCGGGGCCACTGTCCCCGTCCGTGCCCAGCACCTTCCACCCCAGCGCCAGGGAGGCCCCAGGAGAAGGGGCCATCTCCAGGCCCCGGAAGAGGATGGCCACCGTGGAGCTCCCGCACCCAGGCCCTGAGCCCCTCTGCCCCCCATCAGCAGCAGCCAGCAAGCCCCCACAGGAGGACTCAGAAGTTGAGATTGAGGTGGAGAGCCGAGAGGAATtcACTTcgtccctttcctccctctcctccccatccttcACCTCCTCCAGCTCGGCTAAGGACCTGAGCTCACCTGGCGCACAGGGCCCAGCGTGTACATTGACGTCAGCTGTATTGACCCCAGAGGGTGGCCCTCTCACTGGGGTAGCAGCAGTGGCAGTGGTGGTGGCCCCCGATGTACCCGGGGCCGGGGGTCTTGAGTCGGAGCTGGAGACCCTGAGGCAGGTGCTGGACAGCGGGCTGGACTCCAAGGAGTCTAAGGAGAAGTTCCTGCATGAGATCGTCAAGATGAGGGTGAAGCAGGAGGAAAAGCTTGGCACAGCTCTGCAGGCCAAACGCAGCCTCCAACAGGAGTTGGAGTTCCTGCGGGTGGCTAAGAAAGAGAAGCTCAGGGAGGCCACGGAGGCCAAGCGGAACCTGAGGAAGGAGATTGAGCGCCTGCGTGCCGAGAGCGAGAAGAAGATGAAGGAGGCTAATGAGTCACGCATGCGTCTGAAGAGGGAGCTGGAGCAGGCCCGGCAGCTCCGAGTGTGTGACAAGGGTTGCGAGGCGGGCCGCCTGCGCGCCAAGTACTCGGCAcagATCGAGGACTTGCAAATGAAGCTCCAGCATGCCGAGGCAGACCGTGAGCAGCTCCGGGCAGACCTAATGCTGGAACGGGAGGCCAGGGAGCACCTGGAGAGAGTGGTTAAGGAGCTGCAGCAGCAGCTGTGGCCcaaggagcaggacaagacaacCAAGGATACCCCCGCCAACAACTAGCCCCTTCCACCATCAACCCCCTTCCAATCCCCCACCATCAGCACCCCAAAACAAAACTACGCCCACCCCACCCAACCCAACCAGAGAGACTGAGTTAACAGAGACAAAATAGAGAAAAGCAGATATATCGAACCTCTATATGTGCACGTATCCATCCTCACAAAAAATGTATGAGTGCTTGGATGCATCCTTGGAGCAAGAAACAAAGCAAGTCAAACTCTGTATGTGTTACTAGGACAAGCACTGAAACGCACCTCTCCTCCAAAAACTGAAAATTGAACCTGAAGATGAAAAGAATATAGCACAAAATATGGTTGTGCCTGTATTTTCTCTGAGACAAAAACTGGTGAACATTTTGGATACAGACTTTTCTatgatgaaaaaaaaacatgataaTAATACAAGATATTAGACTGGCCTGTTTAGAAACAAAATGGAGGGCTTTCAAAATGGTAGACAGGAGGACTGGACTCTGCCCACGTGCCCGAGCAGGACTTCTACTCCATTTCCCGTGAAGAAGTTAAATCATTTTATGACTTTATAAGCTATTTAAGAGTGCAtagtgatataaaaaaaaaatattaaaaaaaaatctttgactCTTTGTTCTATCAGAGCTTAAAAAAAGATTTACAAAATATATTAACAGACAACAAGCAAGACAAactaccaccagtaccaccatgGTTCGTCGGTGTGTAGAGCAGGCCATTGCGATCCACTGAGGAAAAGTttgatattttttgttgttgtactatTCCAGAAATACATAACGTTTACtatgggagaggtgaggaggattGCATTGGACTAGATATTTTATCTCTTTGGAACTTGTAAAGAACTTATAAAGATAAACTTTGTGATCAATTTGGATCTGGGTGCAATCTGAAGCACAGACCTCTGTCAGTTTCCCCGGGACTGTTGGTTAAAACTAGCTTGCCTGTGTTTCCTCCTTTTCATTTGATTACCGAGAGTTGACATGACTTGCTCAAATTACGATAAAAAAATTAACCATTTGAATATTATGATTTTAGGGCTGGAAGTGGCACCTTTAGCCAGAACcacaaaatgttatttttaatTAAATTATGTTATGTAAAtatagatatgttttttttttacgttacaaTTATAAATCGCACTTTGTCATAACAAAATactgttataatgcattatactCCCACTATTGTCTTCAATCTTCCATTGGAGAGGACATATCCATGACAAGAACAATATAAATCCAAGTGAGCATTTTGTTAATTATATGCAACTCATTTAAATGCAATGTATTCATGTGTTCAAGACAAAATATTGTAaataaaatgagagagaaaaggggtgTACACGCTTGCTTGCTGATACAGTTTGGGCTGTTGAAAAATGTCATTTCAATCATTTTTTGGCACTAATTATACCCTTTTGGCTGTTTAATCAATTGACACTCCTCAAAATAGAAAGGTAGTGGGACGTAAGATTGCAAAACACTCTTCGAGTGCCCATCTCTCCTACATTTTTGGTATTTATTAATACGCCAATGATTCATCGAAGTTCCAAGGTGTTAAACAGAGCTGTTTGACCAGTCATGGAAAAGCAGTGATTGTTAGAGTCCGAAGACACATTGCTCACATGTTTACCTGGGAGAAATGAATGATTAATTAAAGAATACATTTAATAATGCTCCAAATACACAGTGGGTACAATGCAATCCGAATGCACGTTGTGTTTATGCCATTTTCCTTTGGTTCTTGatgttcttgttgttgtttttaacgTGGGATATTTTTATTGCTTGTCTGTTTTTCCAAACAAAAACTCATATTTTCTTTCATATGCATGACATTTGAGAAGGTTTACCATACATATAGTCATTATTGGGCATTGATACTGTACATGTAAGGGTTTTATTGTGTTATGCAATATACAgcaaacatgtattttttaaagaaaaaaaacCCTCATTTTTAAAGGAAACTAAACTTTGTTTATTACATAGATCAGAAGAAGAACTACTTCACAAGTACaccccaaaacacaacacaaGTTCAAACGCAATGCTGGACAACCTCAAGTGCCTGAAAGTGGGCAGATGGTTTCCAGATCAGGAACACTGGCGATGAAGTAATTGTAGCTGGCCCATAGGGACATGCTCAGAGTCAACTCCACCACGGGATGTCATTCCCGTCACAGTGCAGATGTCAAGCCTGTCACACGGTGCAGACACTGTCAATGGAGGGGATACTTTCTTTTTGCACTCTCGAGGGGAGTATCTAGAACATTCTCCCTCCTCTCAGCACTATCCCTCTCGACAGGCCTGACTTGACTTCCTTGCTCAAGTCACAAGATGAAGCTATTGCAGTTTACGGTAGTGATTACATTTACTCTACATTATTAACAAAAAACAATTTAATTGAATTACTTTTAAGTCTAAAAAAACAATAATATCTGTAATTCATTCAGAAATGCTCTTTCAGAGATATGCATGTCAAAAACAATTATAGGTATCAACAGAAAACGTATGTACCATAGCTATGCGGTATTATAAGGTTAATCTTGGTTGTAGATAAGGATGTCATACCAGTTTTACATGATCTGGTCTGCCTATCCAAAGGTGGACATCTATGACTAGTGAAGAGGGCATTATGTTGAAGCCTTAACCAACATTAGAAAGGGCAATGTTAATGAGAGACTAACACTGAGTTTGTGACTTTGACAGACCTTAAATTGGCACATTTTATAGTTGTTTTTACACTCAAACAAATTGATATTTGTAGTTTCCTTTTCATGGTTTTCTACAAAAAGGGGAGAAAATGACGACATTGGCGCTTCGCTcccaagtaaaataaaaaaacggtTAAATTATTTATCATTTTCTAAACAGGAACCATTTTCCTAAATGGACAACAATAAAGCAGCAATAACAGTACATATTCATAGATAAAACTAGCCAGTGTGAAGATTAAAAAATAAGAATTTACAAATGTAAATAATTTTTCATTTACAatattgtattatatatgtaCAAGGTTTATCCTTATTCAAAAAGAAATCTTTTCTGACACAATAGCTGTCTtgtttttttgagtttgtgttttaACCgagaacatgttttaaaaaaataattattgcAGTGCGTTAGAGAATATACCCTACATAAATATGTTTTTATCCCATtgtttggatattttttttttttactgtagagTCTTTATATTGAATGACTTTTTTCACCagttcatatatatttttaacaatATATTCAATATCAAATAGTGTCCCCATGGTAAAAATGAGTCACACAGGAACTACCGTCACCTCGTAGATTTTTTTCCCCATCCTTGTATCTTTTTAGCCCTACGCTGCTGCTAATACTATATCAACTTTACAATTCTAGAAATATTTTTATGTAAAAGGTAAATGTGTGCTTTCTCGTTTATTAATCACGCATATAGTATGAAAAAAAAGCTTGGCTTATTTATCTATTCCTTCCTTTCCCTTGTTTTAGCCTTTTCCACCTCCCCCCATcgacaccctctccctctctcatgacACGGACTATATTGTAAAGTAAAGGACTTTATGAGATTATGTTTGAAAATAGCTATGCTTATATACCACAGTGACTGAATGTACAGTGTATAGATGCATTACCAGAAATAAAGTTGTTTGTCCAGAT

Function

symbol description
ski Enables several functions, including DNA-binding transcription repressor activity, RNA polymerase II-specific; enzyme binding activity; and zinc ion binding activity. Involved in several processes, including SMAD protein signal transduction; negative regulation of osteoblast differentiation; and negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway. Acts upstream of or within negative regulation of Schwann cell proliferation. Located in PML body and centrosome. Part of protein-containing complex.

NR:

description
ski oncogene

GO:

id name namespace
GO:0051216 cartilage development biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0001947 heart looping biological_process
GO:0005634 nucleus cellular_component
GO:0046332 SMAD binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565658.2 True 6392 mRNA 0.44 6 34347929 34429211

Neighbor

gene id symbol gene type direction distance location
LOC110491043 NA coding downstream 477874 33863087 ~ 33870055 (-)
LOC110491843 LOC106567362 coding downstream 485276 33772325 ~ 33862653 (-)
clcn6 clcn6 coding downstream 666686 33652657 ~ 33681243 (-)
LOC118939523 NA coding downstream 816582 33484120 ~ 33531347 (-)
LOC110491041 LOC106572132 coding downstream 864093 33419422 ~ 33483836 (-)
LOC110491852 prkcz coding upstream 24856 34454067 ~ 34596158 (-)
LOC110491856 LOC106566938 coding upstream 341615 34770826 ~ 34796155 (-)
LOC110491859 LOC106566941 coding upstream 417273 34846484 ~ 34880904 (-)
LOC110491858 LOC106566942 coding upstream 504678 34933889 ~ 34953455 (-)
LOC110491860 LOC106566943 coding upstream 552762 34977488 ~ 35013988 (-)
G1367110 NA non-coding downstream 120695 34226917 ~ 34227234 (-)
G1367105 NA non-coding downstream 125016 34222564 ~ 34222913 (-)
G1367102 NA non-coding downstream 128565 34219165 ~ 34219364 (-)
G1367057 NA non-coding downstream 168959 34178731 ~ 34178970 (-)
G1367054 NA non-coding downstream 169912 34177795 ~ 34178017 (-)
G1367389 NA non-coding upstream 21498 34450709 ~ 34479496 (-)
G1367506 NA non-coding upstream 73697 34502908 ~ 34503909 (-)
G1367541 NA non-coding upstream 116712 34545923 ~ 34546438 (-)
G1367395 NA non-coding upstream 139773 34568984 ~ 34573765 (-)
G1367578 NA non-coding upstream 174189 34603400 ~ 34603599 (-)
G1366756 NA other downstream 596522 33747400 ~ 33751407 (-)
G1366703 NA other downstream 663456 33684011 ~ 33684473 (-)
G1365099 NA other downstream 1712418 32634465 ~ 32635511 (-)
G1364348 NA other downstream 2328431 32018794 ~ 32019498 (-)
LOC110491862 tnfrsf6b other upstream 648890 35077807 ~ 35079706 (-)
G1369101 NA other upstream 1318765 35747976 ~ 35780436 (-)
G1369107 NA other upstream 1319646 35748857 ~ 35752941 (-)
LOC110491868 LOC106566949 other upstream 1373857 35474174 ~ 35994010 (-)
G1370601 LOC106566960 other upstream 2848434 37277645 ~ 37278677 (-)

Expression


Co-expression Network