LOC110491853 (LOC106567354)


Basic Information

Item Value
gene id LOC110491853
gene name LOC106567354
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 34646546 ~ 34663067 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565662.2
ACGTCATCATTCGGGCTTTTTGCAGAATACAACTAGTCTGGTTAAATCATTGCAGTTGAGGAAGCTTAGTATCAGCATGGTGCTCGATTTGGACCAATTTAGAGCCGATAAAGGCGGTGATCCTGAAGTAATCAGAGAGACGCAAAAGAAAAGGTTTAAAGACGTGTCACTTGTGGATAAACTGGTACACGCAGACACAGAATGGAGAAAATGTCGTTTTACTGCCGACAACCTCAACAAGGCGAAGAATTTATGCAGCAGAACCGTTGGCGAGAAAATGAAGAAGAAAGAGCCAATTGGGGAGGATGATTCTCTCCCAGATGACACCCAGAACTTGGAGGCCCTAACAGCAGACACACTAGCGCCCCTCACGGTCACCCAGATCAAGAAGGTCCGTCTGCTTGTGGATGAGGCAGTGCAGAAATCTGACAGTGAGAGGGTAAAGCTGGAGGAGGAGCGCTTTCAATACCTGAGAGAGATCGGAAACCTCTTGCATCCATCTGTGCCCATAAGTAATGATGAGGATGCTGATAACAAAGTGGAGCGCACTTGGGGAGACTGTACTGTGCAGAAGAAGTATTCTCACGTGGACCTGGTAGTCATGATCGATGGCTACGACGGAGAGAAAGGAGCTATAGTGGCAGGGAGCCGTGGCTACTTCCTCAAGGGGCCACTAGTTTTCCTGGAGCAGGCATTGATCAACTATGCTCTGCGGATGCTCCACAGCAAGAACTACCAAATGCTGTACACCCCCTTCTTCATGAGGAAAGAGGTCATGCAGGAGGTGGCTCAGCTCAGCCAGTTTGATGATGAACTTTACAAGGTGATTGGGAAGAGCAGTGAGAAGTCTGAGGACACGGCCATTGATGAGAAGTATCTGATTGCTACCTCGGAGCAGCCTATTGCAGCCTTCCTGAGAGACGAGTGGCTGAAGCCAGAGGAGCTGCCCATTCGCTACGCCGGCCTCTCCACCTgcttcagacaggaagtgggctCCCACGGCCGTGACACCCGAGGCATCTTCAGGGTGCACCAATTTGAGAAGATTGAGCAGTTTGTATTTGCCTCTCCTCATGACAACAAGTCCTGGGAGATGATGGATGAGATGATTGGAACTGCTGAGGAGTTCTACCAGACACTAGGGATCCCCTACCGCATCGTCAACATAGTCTCAGGTGCTCTGAACCATGCAGCCAGTAAAAAGCTGGACTTGGAGGCCTGGTTCCCAGGGTCCGCAGCCTTCAGAGAGCTGGTCTCCTGCTCCAACTGTTTAGACTACCAGGCTCGTCGGCTGCGTATCCGCTACGGACAGACCAAAAAGATGATGGACAAGGCCGACTATGTGCATATGCTCAACGCGACCATGTGTGCCACCACACGTGTAATGTGTGCTATCCTGGAGACGTACCAGACAGAAGACGGTATCATTATTCCAGAGGTACTCCGGAACTTCATGCCTCCAGGTATGACCGAGATGCTGAAGTTTGTAAAGCCTGCCCCTATTGATGTGGAGATGTCCAAGAAGCAGAAGAAACAGCAGGATGGAGGGAAGAAGAAGCAGGGAAGTGGAGACCAGCTCCAGAACCAAGTGGAGAACATGTCTGTCCACGATTCCTAGACCCCATCATCATCCCCATTCTTACACTCCCTTCACTCTCACCACATCTGAAAATGGACTGCTCCATCCTATCACCAATGCATCTCATTGTGCTCTGGGTCTAGTGACCAGTCTGTCGCTCTCCTCTCCCAGAGATAAGGTTCAACCCTTTTTCTACTGTATGAACAGAATACATACTGAAAGGTTAATTATGAAAGGGAAAAGCCGAAGGTGTTGCTAGTTAGTGGGAAAGGGGCTGTTAACAGCTTTGGGGCAATAGTAATGTTAGGTCTGCTGCATGCAATTATCTTAACTGTAACATCCAAACAATATCAAGTCTGAACTCTGGAATTCTGTGAAATTTCGTTTGGCGCTTATTATTGCAAAATGTTTTCAAAGTAAGGTGACGTGAACATTCAATCAACATCTTGAGTCGTgcacagccgtgtgtgtgtgtgtgggtgggttgcTTTTAGTAATACAGTTGCTTTGAAGTTCTTAACTACATTTTAATTGTCTGAATGAATATCACCATAAATCACACAACTATCCTCTGTAAATTCAGAAGGGCCGGGGTCATGAGACATCTGGACTCTGTCTTGTTTGGGCTTTTTGTGACACACCGCTTTCTCCAAACTCAGTAGGAGTTTTCCTACATTGTTGCTTGAGGTCATTTGCTTCTAGTGCTTGTCAGGATAATACGATGTCTGTATGTACTTGCGTAAGATGAGGTGTTGATAAAGTGGCACCAATGTAACAATAAATAATATGAAAAATGA

Function

NR:

description
serine--tRNA ligase, cytoplasmic-like

GO:

id name namespace
GO:0006434 seryl-tRNA aminoacylation biological_process
GO:0001569 branching involved in blood vessel morphogenesis biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004828 serine-tRNA ligase activity molecular_function

KEGG:

id description
K01875 SARS, serS; seryl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565662.2 True 2376 mRNA 0.48 11 34646546 34663067

Neighbor

gene id symbol gene type direction distance location
si:ch73-70k4.1 faap20 coding upstream 205083 34434347 ~ 34441463 (+)
LOC110491848 morn1 coding upstream 491876 34073929 ~ 34154670 (+)
si:ch211-251b21.1 LOC106567361 coding upstream 582542 34055773 ~ 34064004 (+)
plch2a LOC106572832 coding upstream 595600 33866678 ~ 34050946 (+)
LOC110491844 LOC106567364 coding upstream 812578 33805531 ~ 33833968 (+)
LOC110491854 LOC106567355 coding downstream 131 34663198 ~ 34671581 (+)
LOC110491855 LOC106566937 coding downstream 48584 34711651 ~ 34757113 (+)
LOC110491857 LOC106566940 coding downstream 147115 34810182 ~ 34830816 (+)
LOC110491044 NA coding downstream 220834 34883901 ~ 34896237 (+)
LOC118939458 NA coding downstream 298220 34961287 ~ 34974894 (+)
G1367579 NA non-coding upstream 40806 34605527 ~ 34605740 (+)
G1367374 NA non-coding upstream 41711 34604597 ~ 34604835 (+)
G1367305 NA non-coding upstream 142601 34503640 ~ 34503945 (+)
G1367218 NA non-coding upstream 167281 34368630 ~ 34479265 (+)
G1367263 NA non-coding upstream 221893 34422234 ~ 34424653 (+)
G1367634 NA non-coding downstream 34676 34697743 ~ 34698230 (+)
G1367736 NA non-coding downstream 219873 34882940 ~ 34883173 (+)
G1367737 NA non-coding downstream 220167 34883234 ~ 34883797 (+)
G1367739 NA non-coding downstream 223503 34886570 ~ 34886814 (+)
G1367747 NA non-coding downstream 237025 34900092 ~ 34908811 (+)
G1366438 NA other upstream 932926 33713233 ~ 33713620 (+)
G1364937 LOC106613263 other upstream 1976415 32669696 ~ 32670131 (+)
G1364907 NA other upstream 2039413 32606790 ~ 32607133 (+)
G1368422 NA other downstream 1079683 35706331 ~ 35779587 (+)
G1368473 yo84 other downstream 1169224 35832291 ~ 35832708 (+)
LOC110491910 LOC108432721 other downstream 3750790 38390387 ~ 38416472 (+)
G1372263 NA other downstream 4958307 39621374 ~ 39621885 (+)
G1372542 NA other downstream 5530745 40193812 ~ 40194351 (+)

Expression


Co-expression Network