LOC110491856 (LOC106566938)


Basic Information

Item Value
gene id LOC110491856
gene name LOC106566938
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 34770826 ~ 34796155 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565669.2
TTTCCAAGTGAAAGGCCTATTGTGCGACGGAAGTGGGATATCCCTATTCCCTGTCAAATATCGCTCCGCTTTTCTTAAATATCTCTCCGCTATAACCACAAGAACAGCTCATAGCTCGTTGGGAACTAGACTCATTTGTGCGGGGATTAGACTCCTGCGGCTAGTCCATACACTTGTTAGTTACATATAAACTGACAAAAGAGTCCGAGGTTGCCGCATAGTTAAATTAGCACACTAGCTCTCAGGCAGACCACGATAGAGGCCATCGCTTCCGCATAGAATCAAGCATCAAGGGCCAAGCCCAGGAAAACTGTTGTTACCCCACTGTGGATTCCCTGAATAGTACCAGGGTGGAGGCAGTCGTAGGCAGAGTGGGTGCCACGTGAAGTGTGGTTTCGGCTTCCTCCATGAGTAACAACGCTGGTCAAAGAGCTCCACGGACCCGGGCGGCGAAGGAAGCCCAGGGGGCAGGGGGGACAACGACATGGATCCCTCAGGACCAGAGAATGGACCCATCCTACAGGCCAACCACCACTGCAGGCCCAACCACAACATGCAGTGGTGGAGGGAGCTCCTGTGTCCTGAGTAAGCTGATCCAGCTGCCGGCTCCACCGCTGTCGCGTCACCAGCTGAAGAAGTTGGAGGAGCACAGGTATAGCAGTGCAGGCCACTCCCTTCTGGAGCCCTTCATGCAGCACTACTGGGAGTGGCTAGTGGCGCGTGTGCCGGCATGGATAGCCCCCAACCTCATCACTATCGTGGGCTTGGCCACAAACATCCTCACCACATTGGTGTTGGTGTACTACTGCCCCACTGCCACTGAACAGGCACCTCTGTGGGCATACCTGTCTTGTGCAGTGGGTCTCTTCATCTACCAATCACTGGACGCCATCGATGGGAAGCAGGCACGGCGCACCAATAACAGCACCCCACTGGGAGAGCTCTTTGACCATGGTTGTGACTCCCTCtcgacagTGTTTGTGGTCCTGGGTACCTGTATCGCCGTCCAGCTTGGCACTAACCCCGACTGGATGTTCTTCTGCTGCTTTGCCGGCATGTTCATGTTCTACTGTGCCCACTGGCAGACCTACGTATCAGGCACCCTGCGCTTTGGCATCATTGATGTGACTGAAGTGCAGTTCTTCATTATAATCATGTATTTACTGGCTGCCATCGGAGGATCAGCTTTTTGGCAGTTCTTGatCCCTGGGGTGAACATCCAGATTAAGATCATTCCAGCCATCCTCACTGTGGCAGGAGCCATCTTTTCCTGCACCAACTACTTCCGGGTCATATTCACGGGAGGTGTAGGAAAGAACGGATCCACCATAGCGGGAACGAGTGTCCTGTCACCGTTCTTCCACATAGGGTCAGTTATCACTCTGGCTATTATGATCTACAAGAAGTCTGCGTCCCAGCTGTTTGAGAAGCACCCCTGTCTGTACGTCCTGGCCTTTGGGTTTGTGTCGGCCAAGATCACCAACAAGCTAGTGGTGGCTCATATGACCAAAAGTGAGATGTCTCTCCATGACTTGGCTTACCTGGGGCCAGGGCTGCTCTTCTTGGACCAGTATTTTAACAGCATCATAGACGAGTACTTGGTCCTCTGGGTGGCACTATTCCTGTCCATCTTTGACCTGGTGCGCTACTGCGTCAGCGTATGCAACCAGATCGCCTCTCACCTGCACATCTTTGTGTTCAAGATCAAACCCCCCAACCTGCGGCCCGTTGCTGCCTCCCAGTCAGGCAAAGATGTGTGGTGACACTTGTGTCCCTGGTCTGGTGACACTGTCCGTACGGAGATGAAGTTGGTGGGTGTACCTCTACCGCCTCCCCCTTGTCACCACAGGATTCCCATTGGATGAGACAAATTGGAGGCGGTCTCTCTACGAATGTATTAGCCAATGAAATTATGAATACATTGAGGGTGGTGGAAATAATTTATTTCAATCTATTTGTTGTGCAATAATGCTCAGTTTTTGCCGATGTTGTGTTGTTTTGGTGTTAAAGGTTCATAACCGAAGAGAAAGGGGTTTTGTTAGTTTGTCGTAAAAGAGCACCCCGTTATTTGGTAACAAACTAATTGAGAATTAGTTGTCTAACCAAACTTTATGGATAGAGGTTAATGTTGCTTACTATAACCGTGCTGCCACTATCTGTGTATTAGCTATTTTTTAAACTGAAATAAATGTTATCCATGGGAAGGAGCAGGTTATACCTAACCAagtaatattataatattatatttaTCTACAGGAAAAACACCTACAGTTTATTAATGTGTCAGAGCAGTAGGACTGAATTTAAATGTCTCTGTTCTTTCAGTATTGGTACTAGTTTAGCTCCTCTACATACAACTACTTGTTCCACTCCAGAGAAAACATTAGTCCTCTGTTCAAGGTGTAGTTCTGTGTACTGCATTCTGAGGTCTCGTCATTAACCAAGTATTAAACGTTAGAACTATATCCGTACGGATGGACGCAGTACCCGTCCGTGTTCAAACataaggaatgttttttttttctgcaAAAGTTAAGGAATGCCTCTTACCTTATATCAAACAGTGACACACAGAGTATTCAAATGTCTGCAGCTAATGTCTCATAACAAGAGTAGAACTTGTCATTGTTCTCGTGTGTATCATATGCATGGGATGGGCATTACAACCCACTGTAGTGGTCACAGCCAATATCTCTGTAACTGATGGGGTTCAACCAATCGAAACATCCATTCAAACGTACATTTTTCCCCCCCCCTTGGATTGTTTGTCATTTCTGATGCAGAGATTTTGAAAATAAAATGCGAAGGATGAATCAGTCGTTGGccgttaaaaaaaaaa
>XM_036946749.1
TTTCCAAGTGAAAGGCCTATTGTGCGACGGAAGTGGGATATCCCTATTCCCTGTCAAATATCGCTCCGCTTTTCTTAAATATCTCTCCGCTATAACCACAAGAACAGCTCATAGCTCGTTGGGAACTAGACTCATTTGTGCGGGGATTAGACTCCTGCGGCTAGTCCATACACTTGTTAGTTACATATAAACTGACAAAAGAGTCCGAGGTTGCCGCATAGTTAAATTAGCACACTAGCTCTCAGGCAGACCACGATAGAGGCCATCGCTTCCGCATAGAATCAAGCATCAAGGGCCAAGCCCAGGAAAACTGTTGTTACCCCACTGTGGATTCCCTGAATAGTACCAGGGTGGAGGCAGTCGTAGGCAGAGTGGGTGCCACGTGAAGTGTGGTTTCGGCTTCCTCCATGAGTAACAACGCTGGTCAAAGAGCTCCACGGACCCGGGCGGCGAAGGAAGCCCAGGGGGCAGGGGGGACAACGACATGGATCCCTCAGGACCAGAGAATGGACCCATCCTACAGGCCAACCACCACTGCAGGCCCAACCACAACATGCAGTGGTGGAGGGAGCTCCTGTGTCCTGAGTAAGCTGATCCAGCTGCCGGCTCCACCGCTGTCGCGTCACCAGCTGAAGAAGTTGGAGGAGCACAGGTATAGCAGTGCAGGCCACTCCCTTCTGGAGCCCTTCATGCAGCACTACTGGGAGTGGCTAGTGGCGCGTGTGCCGGCATGGATAGCCCCCAACCTCATCACTATCGTGGGCTTGGCCACAAACATCCTCACCACATTGGTGTTGGTGTACTACTGCCCCACTGCCACTGAACAGGCACCTCTGTGGGCATACCTGTCTTGTGCAGTGGGTCTCTTCATCTACCAATCACTGGACGCCATCGATGGGAAGCAGGCACGGCGCACCAATAACAGCACCCCACTGGGAGAGCTCTTTGACCATGGTTGTGACTCCCTCtcgacagTGTTTGTGGTCCTGGGTACCTGTATCGCCGTCCAGCTTGGCACTAACCCCGACTGGATGTTCTTCTGCTGCTTTGCCGGCATGTTCATGTTCTACTGTGCCCACTGGCAGACCTACGTATCAGGCACCCTGCGCTTTGGCATCATTGATGTGACTGAAGTGCAGTTCTTCATTATAATCATGTATTTACTGGCTGCCATCGGAGGATCAGCTTTTTGGCAGTTCTTGatCCCTGGGGTGAACATCCAGATTAAGATCATTCCAGCCATCCTCACTGTGGCAGGAGCCATCTTTTCCTGCACCAACTACTTCCGGGTCATATTCACGGGAGGTGTAGGAAAGAACGGATCCACCATAGCGGTGGCTCATATGACCAAAAGTGAGATGTCTCTCCATGACTTGGCTTACCTGGGGCCAGGGCTGCTCTTCTTGGACCAGTATTTTAACAGCATCATAGACGAGTACTTGGTCCTCTGGGTGGCACTATTCCTGTCCATCTTTGACCTGGTGCGCTACTGCGTCAGCGTATGCAACCAGATCGCCTCTCACCTGCACATCTTTGTGTTCAAGATCAAACCCCCCAACCTGCGGCCCGTTGCTGCCTCCCAGTCAGGCAAAGATGTGTGGTGACACTTGTGTCCCTGGTCTGGTGACACTGTCCGTACGGAGATGAAGTTGGTGGGTGTACCTCTACCGCCTCCCCCTTGTCACCACAGGATTCCCATTGGATGAGACAAATTGGAGGCGGTCTCTCTACGAATGTATTAGCCAATGAAATTATGAATACATTGAGGGTGGTGGAAATAATTTATTTCAATCTATTTGTTGTGCAATAATGCTCAGTTTTTGCCGATGTTGTGTTGTTTTGGTGTTAAAGGTTCATAACCGAAGAGAAAGGGGTTTTGTTAGTTTGTCGTAAAAGAGCACCCCGTTATTTGGTAACAAACTAATTGAGAATTAGTTGTCTAACCAAACTTTATGGATAGAGGTTAATGTTGCTTACTATAACCGTGCTGCCACTATCTGTGTATTAGCTATTTTTTAAACTGAAATAAATGTTATCCATGGGAAGGAGCAGGTTATACCTAACCAagtaatattataatattatatttaTCTACAGGAAAAACACCTACAGTTTATTAATGTGTCAGAGCAGTAGGACTGAATTTAAATGTCTCTGTTCTTTCAGTATTGGTACTAGTTTAGCTCCTCTACATACAACTACTTGTTCCACTCCAGAGAAAACATTAGTCCTCTGTTCAAGGTGTAGTTCTGTGTACTGCATTCTGAGGTCTCGTCATTAACCAAGTATTAAACGTTAGAACTATATCCGTACGGATGGACGCAGTACCCGTCCGTGTTCAAACataaggaatgttttttttttctgcaAAAGTTAAGGAATGCCTCTTACCTTATATCAAACAGTGACACACAGAGTATTCAAATGTCTGCAGCTAATGTCTCATAACAAGAGTAGAACTTGTCATTGTTCTCGTGTGTATCATATGCATGGGATGGGCATTACAACCCACTGTAGTGGTCACAGCCAATATCTCTGTAACTGATGGGGTTCAACCAATCGAAACATCCATTCAAACGTACATTTTTCCCCCCCCCTTGGATTGTTTGTCATTTCTGATGCAGAGATTTTGAAAATAAAATGCGAAGGATGAATCAGTCGTTGGccgttaaaaaaaaaa

Function

NR:

description
choline/ethanolaminephosphotransferase 1-like

GO: NA

KEGG:

id description
K00993 EPT1; ethanolaminephosphotransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565669.2 False 2839 mRNA 0.48 9 34770826 34796155
XM_036946749.1 True 2680 mRNA 0.48 8 34770826 34796155

Neighbor

gene id symbol gene type direction distance location
LOC110491852 prkcz coding downstream 174668 34454067 ~ 34596158 (-)
skia ski coding downstream 341615 34347929 ~ 34429211 (-)
LOC110491043 NA coding downstream 900771 33863087 ~ 33870055 (-)
LOC110491843 LOC106567362 coding downstream 908173 33772325 ~ 33862653 (-)
clcn6 clcn6 coding downstream 1089583 33652657 ~ 33681243 (-)
LOC110491859 LOC106566941 coding upstream 50329 34846484 ~ 34880904 (-)
LOC110491858 LOC106566942 coding upstream 137734 34933889 ~ 34953455 (-)
LOC110491860 LOC106566943 coding upstream 185818 34977488 ~ 35013988 (-)
zgpat zgpat coding upstream 250322 35046477 ~ 35058485 (-)
LOC110491862 tnfrsf6b coding upstream 281652 35077807 ~ 35079706 (-)
G1367863 NA non-coding downstream 8095 34762423 ~ 34762731 (-)
G1367854 NA non-coding downstream 19338 34747739 ~ 34751488 (-)
G1367825 NA non-coding downstream 72685 34697579 ~ 34698141 (-)
G1367822 NA non-coding downstream 76498 34694023 ~ 34694328 (-)
G1367783 LOC106567354 non-coding downstream 107763 34657335 ~ 34663063 (-)
G1367921 NA non-coding upstream 85641 34881796 ~ 34883010 (-)
G1367922 NA non-coding upstream 89025 34885180 ~ 34885509 (-)
G1367944 NA non-coding upstream 132045 34928200 ~ 34928451 (-)
G1367829 NA non-coding upstream 133300 34929455 ~ 34930967 (-)
G1366756 NA other downstream 1019419 33747400 ~ 33751407 (-)
G1366703 NA other downstream 1086353 33684011 ~ 33684473 (-)
G1365099 NA other downstream 2135315 32634465 ~ 32635511 (-)
G1364348 NA other downstream 2751328 32018794 ~ 32019498 (-)
G1369101 NA other upstream 951821 35747976 ~ 35780436 (-)
G1369107 NA other upstream 952702 35748857 ~ 35752941 (-)
LOC110491868 LOC106566949 other upstream 1006913 35474174 ~ 35994010 (-)
G1370601 LOC106566960 other upstream 2481490 37277645 ~ 37278677 (-)

Expression


Co-expression Network