LOC110491858 (LOC106566942)


Basic Information

Item Value
gene id LOC110491858
gene name LOC106566942
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 34933889 ~ 34953455 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565672.2
AGGTGTTAATGAATCACATTTCTTTTAGAGCGGCATCATGGCGTCATTAGCCAGCTAAACAGATTTACAGTATTTGAAGAAAGGGAGGGTTATCTGACGTTCATCTATAACAATTAAGCGTCATAAGTTTGATTGTCATTAGTTTAACTCAAGTAATGAAAAATACACATATTTTCGACAAAAAATAAGTTATGGATATATGCAACGGGAGGAGGCGAAAAATAAGAACCCCAAGAAGTCTGAGGGCTTACAAAAGGCTGGTTGAAGCACAGAACGCTACCGCCAACATGACGAAGCGGGAGATGAAACGAGAGGTGTGCAAAGTCCTGAGGTCGCTAGCGGTAGAGAACAACAACGTGGACATCGATGTCCCCATGGAGGAGCACTGTTTCTCTATGAACTTTAGTAAGAACGAGAACCTCGAGGAGCATGCCATGGTTATGGCACCACGTTACAGTCTGTTGCGAGAGGTCGGAAGGGGCAGCTATGGGGTAGTGTTCGAGGCAATTGCACGGAGGACAGGGGCAAGGGTAGCGGTTAAAAAACTCCAGTGTAACGCTCCTGAAAATGTGGAACTCGCTCTGTCAGAATTCTGGGCTTTGGCAAGCCTGGAGAAGAAGCACGAGAATGTGGTGCAGCTCGAGGAATGTGTGCTACAAAGGAATGGAATGGCCCAGAAAAtgagtcatggaaataaaaggtCAAAACAATACCTGCGGTTGGTGGAGACTTCACTAAAAGGTGAGCGAATTCTGGGCTACCCGGAGGAGCCGTGCTACCTATGGTTCATCATGGAGTTCTGCGAAGGCGGGGACCTGAACCAGTACATCCTTTCGCGACGGCCCGATCCGCTCACCAACAAGAGCTTCATGCGCCAGCTGACCAGTGCCGTGGCCTTCCTGCACCAGAACAACATTGTGCACCGCGACCTCAAGCCCGACAACATCCTCATCTCCCAGAAGTCAGGGTTGCCTGTCCTCAAAGTGGCTGACTTCGGCCTCAGCAAGGTTTGCGCAGGCTTGGGCAAAGACGGCAATGAGCACCCCAAAGCTGGTGGCGACAGAAACAACGTGAACAAGTTCTGGTTGTCGTCAACATGTGGCTCAGACTTTTTCATGGCGCCCGAGGTGTGGGAGGGCCACTACACGGCCAAGGCTGACATCTTTGCCCTGGGAATCATCATCTGGGCCATGCTGGAGCGGATCACCTTCATCGACGCCGAGTCCAAGCGCGAGCTGTTGGGCACCTACGTGCGTCGGGGCACTGAGATTGTGCCAGTGGGTGAGGCGCTCCTGGGGAACCCCAAGATGGTGCTCCACATTCCGCAGAAGACACGCAGCACCATGTCTGAGGGGGTGAAGAAGCTTCTGCAGGACATGCTTGCGGTCAACCCCCTGGACCGGCCCGACGCCTTCCAACTGGAGGTGCTGGTGAACCTAGTCACGTGTGCTGCGTGACACCGCTCCCCTCCCATTCCCCTTTCCAAACCATGGCCAGTCTGCTTTTTTACCAGatGTTTACTAACTCAATGTGGGATCCCAAGTCTGTACAGAGGTGGAAAAAGGGACTCTGATCATCTCTGAACTTTAAAACCTCTGTGATTGAGGTCAGCACTTCAAAAATCAGGACACCATCTTAGGAAAATCTATGCAATCAAATCGTATGGAAAGTCAGGTTCTCTCCCCGCTTCTTCTATTTTAAATTTGGAACGTTGTCACCAAAAGCCGAAAGACGATCACCAATGTGTGATGGTCAGCTATGCCAGAACACACCTTGCACACCTGGTTTGAAATGGCCTGAAGGAGTAATCATGATTAAGTTATGTTTATATTTGATATGCTGGTCTTCAAAATAAATTTTTctcaatgtt
>XM_036946754.1
CAGGTGTTAATGAATCACATTTCTTTTAGAGCGGCATCATGGCGTCATTAGCCAGCTAAACAGATTTACAGTATTTGAAGAAAGGGAGGGTTATCTGACGTTCATCTATAACAATTAAGCGTCATAAGTTTGATTGTCATTAGTTTAACTCAAGTAATGAAAAATACACATATTTTCGACAAAAAATAAGTTATGGATATATGCAACGGGAGGAGGCGAAAAATAAGAACCCCAAGAAGTCTGAGGGCTTACAAAAGGCTGGTTGAAGCACAGAACGCTACCGCCAACATGACGAAGCGGGAGATGAAACGAGAGGTGTGCAAAGTCCTGAGGTCGCTAGCGGTAGAGAACAACAACGTGGACATCGATGTCCCCATGGAGGAGCACTGTTTCTCTATGAACTTTAGTAAGAACGAGAACCTCGAGGAGCATGCCATGGTTATGGCACCACGTTACAGTCTGTTGCGAGAGGTCGGAAGGGGCAGCTATGGGGTAGTGTTCGAGGCAATTGCACGGAGGACAGGGGCAAGGGTAGCGGTTAAAAAACTCCAGTGTAACGCTCCTGAAAATGTGGAACTCGCTCTGTCAGAATTCTGGGCTTTGGCAAGCCTGGAGAAGAAGCACGAGAATGTGGTGCAGCTCGAGGAATGTGTGCTACAAAGGAATGGAATGGCCCAGAAAAtgagtcatggaaataaaaggtCAAAACAATACCTGCGGTTGGTGGAGACTTCACTAAAAGGTGAGCGAATTCTGGGCTACCCGGAGGAGCCGTGCTACCTATGGTTCATCATGGAGTTCTGCGAAGGCGGGGACCTGAACCAGTACATCCTTTCGCGACGGCCCGATCCGCTCACCAACAAGAGCTTCATGCGCCAGCTGACCAGTGCCGTGGCCTTCCTGCACCAGAACAACATTGTGCACCGCGACCTCAAGCCCGACAACATCCTCATCTCCCAGAAGTCAGGGTTGCCTGTCCTCAAAGTGGCTGACTTCGGCCTCAGCAAGGTTTGCGCAGGCTTGGGCAAAGACGGCAATGAGCACCCCAAAGCTGGTGGCGACAGAAACAACGTGAACAAGTTCTGGTTGTCGTCAACATGTGGCTCAGACTTTTTCATGGCGCCCGAGGTGTGGGAGGGCCACTACACGGCCAAGGCTGACATCTTTGCCCTGGGAATCATCATCTGGGCCATGCTGGAGCGGATCACCTTCATCGACGCCGAGTCCAAGCGCGAGCTGTTGGGCACCTACGTGCGTCGGGGCACTGAGATTGTGCCAGTGGGTGAGGCGCTCCTGGGGAACCCCAAGATGGTGCTCCACATTCCGCAGAAGACACGCAGCACCATGTCTGAGGGGGTGAAGAAGCTTCTGCAGGACATGCTTGCGGTCAACCCCCTGGACCGGCCCGACGCCTTCCAACTGGAGGTGCTGGTGAACCTAGTCACGTGTGCTGCGTGACACCGCTCCCCTCCCATTCCCCTTTCCAAACCATGGCCAGTCTGCTTTTTTACCAGatgaacgtggtaccttcaggcgtttggacatttctcccaaggatgaaccaggcttg

Function

NR:

description
serine/threonine-protein kinase 35-like

GO: NA

KEGG:

id description
K08859 STK35, PDIK1, CLIK1; serine/threonine kinase 35

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565672.2 False 1870 mRNA 0.50 3 34933889 34953454
XM_036946754.1 True 1570 mRNA 0.52 3 34945053 34953455

Neighbor

gene id symbol gene type direction distance location
LOC110491859 LOC106566941 coding downstream 52985 34846484 ~ 34880904 (-)
LOC110491856 LOC106566938 coding downstream 137734 34770826 ~ 34796155 (-)
LOC110491852 prkcz coding downstream 337731 34454067 ~ 34596158 (-)
skia ski coding downstream 504678 34347929 ~ 34429211 (-)
LOC110491043 NA coding downstream 1063834 33863087 ~ 33870055 (-)
LOC110491860 LOC106566943 coding upstream 28518 34977488 ~ 35013988 (-)
zgpat zgpat coding upstream 93022 35046477 ~ 35058485 (-)
LOC110491862 tnfrsf6b coding upstream 124352 35077807 ~ 35079706 (-)
LOC110491863 LOC106566945 coding upstream 168383 35121838 ~ 35270245 (-)
LOC110491865 LOC106566948 coding upstream 383048 35336503 ~ 35454231 (-)
G1367829 NA non-coding downstream 2922 34929455 ~ 34930967 (-)
G1367944 NA non-coding downstream 5438 34928200 ~ 34928451 (-)
G1367922 NA non-coding downstream 48380 34885180 ~ 34885509 (-)
G1367921 NA non-coding downstream 50879 34881796 ~ 34883010 (-)
G1367863 NA non-coding downstream 171158 34762423 ~ 34762731 (-)
G1368663 NA non-coding upstream 32093 34985548 ~ 34986044 (-)
G1368666 NA non-coding upstream 43339 34996794 ~ 35085014 (-)
G1368710 NA non-coding upstream 160643 35114098 ~ 35116373 (-)
G1368795 NA non-coding upstream 311335 35264790 ~ 35351316 (-)
G1366756 NA other downstream 1182482 33747400 ~ 33751407 (-)
G1366703 NA other downstream 1249416 33684011 ~ 33684473 (-)
G1365099 NA other downstream 2298378 32634465 ~ 32635511 (-)
G1364348 NA other downstream 2914391 32018794 ~ 32019498 (-)
G1369101 NA other upstream 794521 35747976 ~ 35780436 (-)
G1369107 NA other upstream 795402 35748857 ~ 35752941 (-)
LOC110491868 LOC106566949 other upstream 849613 35474174 ~ 35994010 (-)
G1370601 LOC106566960 other upstream 2324190 37277645 ~ 37278677 (-)

Expression


Co-expression Network