LOC118939525 (LOC106572192)


Basic Information

Item Value
gene id LOC118939525
gene name LOC106572192
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 36029672 ~ 36030965 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946766.1
TGGATATTTGAACTGGTCTTTGCCCAGTCTGTCAAAGAGACTAGAGCACGATACTGAACAGATACTTTACTGAGGATAAATGAAGCATTTTTTTCTCCTGATGATGATCCATCTACTGATGGTGCAACTGCCTCAATTTGTAAAAGCAATACAAGAAAATGGGCATGCAGAGGCTCCAGGAGCCACAACAGTCTTGAACGGTTTGGAGAGGCTGAGAAACAGGGCCAGTTTCATTGCCAAAAGCTGTAAGGAAATAAGAGACAGATATGACCAAAAAGAAGATGGGCTGTACTACCTCACCACAGCCAACGGGGCGATCTACCAGACCTTCTGCGACATGACTACTGCTGGCGGTGGCTGGACACTTGTGGCGAGTGTGCACGAGAACAACATGTATGGGAAGTGCACAGTGGGTGATCGTTGGTCTAGCCAGCAAGGCAGCAACCCTAACTGGCCAGACGGAGATGGAAACTGGGCCAACATGGTTACTTTTGGAACCACAGATGGTGCCACCTCAGATGACTTAAAAAATCCTGGCTATTATGACATTGTGGCAGAAGACATGTCGGTGTGGCACGTTCCCAACAACTCCCCTATGGAACACTGGAACATAGCCGCCATCCTCCGCTACCACACAGAGAGACGCTTTCTCACCATTTATGGGGGAAACCTGCACCAACTCTTTAAGCTCTACCCAGTGAGATATAATGCTGGGGCATGTGGCAACACAGGACCTGCCATTCCAATCGTGTATGACTTTGGGAACATAGAGACCACCAGAAATTTTTACGGGCCCAACTCAAGAAACCAGTTTGAGCCTGGCTTCATTACTTTCAGACCAATAAATAATGAACGTGCAGCCATGGCTATCTGCTCTGGGGTCAAACCAAAGCCAAACACTCGCTGCGACACTGAACATTACTGTATTGGTGGTGGATACTTCCCTGAGGAGGCCCCTCGTCAGTGTGGTGACTTCCCAGGCTTTGACTGGAATGGCTATGGTACCAACAAAGAATGGAGTTCATCAAAGGAGATTACTGAAGCAGCTGTGTTACTCTTCTACCGTTAAAATCCATTCTATTGATTACCAATGCCTTCAGATGGCAAGATGTAAAGATACATTTACTTAATACTGATGCTTATACTATAATCAACATCACAGCACTAtgatttgcatttgtttaatctATAAATTCCGAATACATACGTATCGCATTTCCCTGTTTCAAACTGAAAGAGACTATTACAATTTTGTGAATATGAATGGCTGAAATAAAGACTACTCTAAAGGAGA

Function

NR:

description
intelectin-like

GO: NA

KEGG:

id description
K17527 ITLN; intelectin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946766.1 True 1294 mRNA 0.45 1 36029672 36030965

Neighbor

gene id symbol gene type direction distance location
LOC110491871 LOC106572192 coding upstream 6884 36021510 ~ 36022788 (+)
LOC110491045 NA coding upstream 10841 36006534 ~ 36018831 (+)
LOC110491864 LOC106566946 coding upstream 695208 35325416 ~ 35334464 (+)
LOC118939524 NA coding upstream 779315 35248778 ~ 35250357 (+)
LOC118939458 NA coding upstream 1054778 34961287 ~ 34974894 (+)
LOC118939526 LOC106572192 coding downstream 6940 36037905 ~ 36039203 (+)
LOC110511074 LOC106572192 coding downstream 15024 36045989 ~ 36047282 (+)
LOC118939527 LOC106572192 coding downstream 23257 36054222 ~ 36055520 (+)
LOC110491873 LOC104949228 coding downstream 30383 36061348 ~ 36111292 (+)
LOC110491874 NA coding downstream 81896 36112861 ~ 36121437 (+)
G1368556 NA non-coding upstream 87534 35941881 ~ 35942138 (+)
G1368475 NA non-coding upstream 194950 35834495 ~ 35834722 (+)
G1368474 NA non-coding upstream 195477 35833971 ~ 35834195 (+)
G1368472 NA non-coding upstream 198217 35831147 ~ 35831455 (+)
G1368471 NA non-coding upstream 199338 35829911 ~ 35830334 (+)
G1368613 NA non-coding downstream 24891 36055856 ~ 36056270 (+)
G1368644 NA non-coding downstream 74186 36105151 ~ 36107928 (+)
G1369345 NA non-coding downstream 139526 36170491 ~ 36170788 (+)
G1368473 yo84 other upstream 196964 35832291 ~ 35832708 (+)
G1368422 NA other upstream 271009 35706331 ~ 35779587 (+)
si:ch73-70k4.1 faap20 other upstream 1588335 34434347 ~ 34441463 (+)
LOC110491848 morn1 other upstream 1875029 34073929 ~ 34154670 (+)
G1366438 NA other upstream 2316052 33713233 ~ 33713620 (+)
LOC110491910 LOC108432721 other downstream 2382892 38390387 ~ 38416472 (+)
G1372263 NA other downstream 3590409 39621374 ~ 39621885 (+)
G1372542 NA other downstream 4162847 40193812 ~ 40194351 (+)
znf385a LOC106567037 other downstream 4235097 40265875 ~ 40377336 (+)
tac3a tac3 other downstream 4401719 40431869 ~ 40437128 (+)

Expression


Co-expression Network