LOC110492898 (LOC106567320)


Basic Information

Item Value
gene id LOC110492898
gene name LOC106567320
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 37046699 ~ 37048117 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567364.2
CAAGACTCCAAGACAATGGATGGAGGTCCCCCCTCGACGCGCGAAACTCGCATAAATACAGCGCTCTCCCTCCGCTCAGCACACAGCAGCTCACCACCTCGCAAAGAGCACATCGCCTCTCTCCTAAAAGCACAACTTCTAGCTAAAGACATGACTCCAAGAATCACTCCTGAGACTACCCAGCTTGTCCCCTCAAGGTCCACGGTGGCCCAGAGGAAAGAAGCGAACGAACTGAGAAAGACACTAAAGCCTTTGTTGGAAAAGAAAAGGCGCGCACGCATCAACGACAGCCTCGGTCAATTGAAGACTCTAATCCTCCCTCTGGTCGGCAAAGACAACGCTCCATACTCGAAGCTTGAGAAAGCCAATATTCTGGAGATGACCGTCCGATTCCTCCGAGATCTCCCTTCATCTTCAGTCAAAAGTTCATCAGACAGCTACAAAGAAGGGTACAAAGCCTGCCTGCAGCGCGTCACCGCTCTGATCCCCAAAACGAACCTGGACAAAGACTCGTGTCAGCGGGTGAACGACTTCATCCAGCAGGCCATGTCTGCGTCCGTCGACCCAGCTTGTCAGAACTGTTGCGCCCAGAGCTCCAGGGCTTTCCCCCAGATTCAGCAGAGACTACTGAGCCTCAAAGCCAACGTTGGCTCCAGAATCGAGAACCACTCGAACTCGCTTCCCAACCGGCCCCAGCCAGTGCCACAAACTATCAATGCTAACATGTGGAGACCCTGGTAGATTAGACAGACGCTCCCTTAGCGAGCATTGttttgtgatatatatatatataaacgctGTTAGATGTAGATATTAACTGGAAGAGATGAGGGAGTTATTTCACGTTTGACTAGTAATGCATTTATTTATTCACAGACAAATCAGATGAGCACAGACTTTATGAGCAGACAAATTCTATGATCTTTGTTAGGCTAAATGCAATCCTCTTTGGGATTTCCAAGATTTGGGTTGTAGACAACACAATTGTAAAACCCCAAGGGTTATTTTGTTTGAGGTTTGCGCTATTGACTTAAGTACTTTTGGTCTGTGCAAAGGAGTAGACTGTAAACACTGTGTGTTATAGTAACGTATTATTTATTTGATGAGAACACAATTTAGTTTATGTGTCTTATGACACAAACGATTTTGTCATTGATCATACACTTTCAATAAAAGATCATTATA
>XM_036945854.1
CAAGACTCCAAGACAATGGATGGAGGTCCCCCCTCGACGCGCGAAACTCGCATAAATACAGCGCTCTCCCTCCGCTCAGCACACAGCAGCTCACCACCTCGCAAAGAGCACATCGCCTCTCTCCTAAAAGCACAACTTCTAGCTAAAGACATGACTCCAAGAATCACTCCTGAGACTACCCAGCTTGTCCCCTCAAGGTCCACGGTGGCCCAGAGGAAAGAAGCGAACGAACTGAGAAAGACACTAAAGCCTTTGTTGGAAAAGAAAAGGCGCGCACGCATCAACGACAGCCTCGGTCAATTGAAGACTCTAATCCTCCCTCTGGTCGGCAAAGACAACGCTCCATACTCGAAGCTTGAGAAAGCCAATATTCTGGAGATGACCGTCCGATTCCTCCGAGATCTCCCTTCATCTTCAGTCAAAAGTCAGTATTATTTCAGAAAGCTAATTCTATCATGTTGTGTATGTGTACCGTGTTGTATTAATATGTTGCACATTTGTCATTGGATCATTAAACTAAACTTTCGCCTATTTTTTCCCCCAGGTTCATCAGACAGCTACAAAGAAGGGTACAAAGCCTGCCTGCAGCGCGTCACCGCTCTGATCCCCAAAACGAACCTGGACAAAGACTCGTGTCAGCGGGTGAACGACTTCATCCAGCAGGCCATGTCTGCGTCCGTCGACCCAGCTTGTCAGAACTGTTGCGCCCAGAGCTCCAGGGCTTTCCCCCAGATTCAGCAGAGACTACTGAGCCTCAAAGCCAACGTTGGCTCCAGAATCGAGAACCACTCGAACTCGCTTCCCAACCGGCCCCAGCCAGTGCCACAAACTATCAATGCTAACATGTGGAGACCCTGGTAGATTAGACAGACGCTCCCTTAGCGAGCATTGttttgtgatatatatatatataaacgctGTTAGATGTAGATATTAACTGGAAGAGATGAGGGAGTTATTTCACGTTTGACTAGTAATGCATTTATTTATTCACAGACAAATCAGATGAGCACAGACTTTATGAGCAGACAAATTCTATGATCTTTGTTAGGCTAAATGCAATCCTCTTTGGGATTTCCAAGATTTGGGTTGTAGACAACACAATTGTAAAACCCCAAGGGTTATTTTGTTTGAGGTTTGCGCTATTGACTTAAGTACTTTTGGTCTGTGCAAAGGAGTAGACTGTAAACACTGTGTGTTATAGTAACGTATTATTTATTTGATGAGAACACAATTTAGTTTATGTGTCTTATGACACAAACGATTTTGTCATTGATCATACACTTTCAATAAAAGATCATTATA

Function

NR:

description
transcription factor HES-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567364.2 False 1185 mRNA 0.46 3 37046699 37048117
XM_036945854.1 True 1305 mRNA 0.45 2 37046699 37048117

Neighbor

gene id symbol gene type direction distance location
LOC110492897 LOC106567319 coding downstream 8432 37036862 ~ 37038267 (-)
LOC110491877 NA coding downstream 684477 36351765 ~ 36362222 (-)
LOC110491872 LOC106566950 coding downstream 969001 36071627 ~ 36077698 (-)
LOC110491868 LOC106566949 coding downstream 1052689 35474174 ~ 35994010 (-)
LOC110491870 NA coding downstream 1061199 35979860 ~ 35985500 (-)
LOC100305135 LOC100305135 coding upstream 170679 37218796 ~ 37228315 (-)
LOC110491882 LOC106572212 coding upstream 252748 37300865 ~ 37302929 (-)
LOC118939528 NA coding upstream 549569 37597686 ~ 37604276 (-)
LOC110491896 LOC106566965 coding upstream 574716 37622833 ~ 37634876 (-)
LOC118939599 NA coding upstream 635402 37683519 ~ 37683637 (-)
G1370210 NA non-coding downstream 69366 36977124 ~ 36977333 (-)
G1370208 NA non-coding downstream 70167 36976169 ~ 36976532 (-)
G1370207 NA non-coding downstream 74676 36971797 ~ 36972023 (-)
G1370198 NA non-coding downstream 83628 36962746 ~ 36963071 (-)
G1370196 NA non-coding downstream 88673 36957661 ~ 36958026 (-)
G1370472 NA non-coding upstream 37614 37085731 ~ 37112031 (-)
G1370491 NA non-coding upstream 66251 37114368 ~ 37114601 (-)
G1370529 NA non-coding upstream 114440 37162557 ~ 37164019 (-)
G1370550 NA non-coding upstream 148116 37196233 ~ 37196670 (-)
G1370551 NA non-coding upstream 148923 37197040 ~ 37197457 (-)
G1369101 NA other downstream 1266263 35747976 ~ 35780436 (-)
G1369107 NA other downstream 1293758 35748857 ~ 35752941 (-)
LOC110491862 tnfrsf6b other downstream 1967094 35077807 ~ 35079706 (-)
LOC110491043 NA other downstream 3176801 33863087 ~ 33870055 (-)
G1370601 LOC106566960 other upstream 229528 37277645 ~ 37278677 (-)
G1370826 NA other upstream 612572 37660689 ~ 37661465 (-)
G1371532 NA other upstream 1235291 38283408 ~ 38284066 (-)
G1372845 LOC106566999 other upstream 1723511 38771628 ~ 38772877 (-)
G1372979 NA other upstream 1943475 38991592 ~ 38992220 (-)

Expression

LOC110492898(LOC106567320) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 0.4.
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LOC110492898(LOC106567320) Expression in each Bioproject

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LOC110492898(LOC106567320) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 30.
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Co-expression Network