LOC100305135 (LOC100305135)


Basic Information

Item Value
gene id LOC100305135
gene name LOC100305135
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 37218796 ~ 37228315 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564393.2
TATGGATAGGGATATTCCTTTGCGCTGTTTGTCATTCCTCCCAGTTCGATCGGCAACGGGAGCGGAGAGGAAAGTTGAGAGTCCGAAGGCAGCAGCCCCTACCACCGCCGGCCCAGGTTACCATCTAGAACCGGGAAACACACTAGAAAGCCACCGCCGGCAAAAGCCATAACCAACCAGAAAACATGAGCAGCGAGGCCGAGACACAACCGCCGGAGCCTGCTGTCGTCGACGCGGAGAGCCCATCCAGCCCGGCGGCAGCCGCCGTTTCCGCGGGGGATAAGAAGGTCATCGCAACTAAGGTCTTGGGCACAGTCAAATGGTTCAACGTCAGAAATGGCTACGGTTTCATCAACAGGAACGACACAAAAGATGACGTCTTTGTCCACCAGactGCCATAAAGAAAAACAACCCAAGGAAATACCTTCGCAGTGTTGGAGATGGAGAAATTGTGGAGTTTGATGTGGTTGAAGGGGAGAAGGGAGCAGAGGCAGCCAATGTCACCGGCCCAGCGGGTGTCCCAGTCCAGGGGAGCAAGTATGCCGCTGACCGGAACCGCTATAGGCGGTACCCCCGCAGGAGGGGCCCAGCCCGTGACGGCGAATACCCAGACAACTACCAGAGCGACGGTGAGGGCGAAGGAGATCGGCCCCCCCGCAAGAGCCGTGAGGGCGCCGAGAGCGCcccagagggagagatgcagaccCAGCAGCGCAGGCCCTCCTTCCCTGGGAGACGGCGCTACCCCCCATACTTTGTACGTAGACGCTACGGCCGTCGGCCCCCGTACACCAACGCACCTCGCGGAGAGATGACTGAGGGTGGAGAAGGTGGCGAGAACCAGGGCGGTCCAGACCAGGGCAACAAACCAATGAGGCAGAACTACTACAGAGGCTTCCGACCAAGGTTCAGACCAAGCAGAGGTGGTGGTCCACCCCGTCCCAGACCAGTACGGGACGGCGAGGGGGAAAACAAGGAGAACCAGGGTGGTGACGGCGAGAACCAGGAGCCCCGCCAGCGCCGCTACCGCCGAAACTTCAACTACCGCCGCAGACGCCCACAGACCGGTGGCAAGCCCCAGGATGGCAAGGAGGCCAAGGCCGACGGCGAACCATCCCTTGAGAAAACGTCCGCTCCCGCAGCCGAGCAGGGCGGGGCTGAGTAGAAACTACCGGCATACCATCTCTACCATCGTCCGGTAATGTCATCAAGAAGAAACATCAAAGATCTGAGCAATAAGAAACAGATTTGACTTGACGATCGTCTTAAGCTTGTACCATGCATTTGACCGGATTACCACCGATTTGCCTGCAGAATCTATGCAGACCTGTTTTGTTCCATTATTTTTACGTGACagctataaaaataaaaaaaaaagttttgagGAAACGGAAGACGTTTTTTTTCTAAATCGGTCCTAAGTTTTTACACAATGGTTTTTAAAAGAAAAGTAATTTGATATCTGGTCAGTttgacatttttaaaaaactttttatGTATTCAAACATGAATTTGAACAAAATGCAAGCTCAAATAAAAGTCAAAGAAGAACTGG
>XM_021564394.2
TATGGATAGGGATATTCCTTTGCGCTGTTTGTCATTCCTCCCAGTTCGATCGGCAACGGGAGCGGAGAGGAAAGTTGAGAGTCCGAAGGCAGCAGCCCCTACCACCGCCGGCCCAGGTTACCATCTAGAACCGGGAAACACACTAGAAAGCCACCGCCGGCAAAAGCCATAACCAACCAGAAAACATGAGCAGCGAGGCCGAGACACAACCGCCGGAGCCTGCTGTCGTCGACGCGGAGAGCCCATCCAGCCCGGCGGCAGCCGCCGTTTCCGCGGGGGATAAGAAGGTCATCGCAACTAAGGTCTTGGGCACAGTCAAATGGTTCAACGTCAGAAATGGCTACGGTTTCATCAACAGGAACGACACAAAAGATGACGTCTTTGTCCACCAGactGCCATAAAGAAAAACAACCCAAGGAAATACCTTCGCAGTGTTGGAGATGGAGAAATTGTGGAGTTTGATGTGGTTGAAGGGGAGAAGGGAGCAGAGGCAGCCAATGTCACCGGCCCAGCGGGTGTCCCAGTCCAGGGGAGCAAGTATGCCGCTGACCGGAACCGCTATAGGCGGTACCCCCGCAGGAGGGGCCCAGCCCGTGACGGCGAATACCCAGACAACTACCAGAGCGACGGTGAGGGCGAAGGAGATCGGCCCCCCCGCAAGAGCCGTGAGGGCGCCGAGAGCGCcccagagggagagatgcagaccCAGCAGCGCAGGCCCTCCTTCCCTGGGAGACGGCGCTACCCCCCATACTTTGTACGTAGACGCTACGGCCGTCGGCCCCCGTACACCAACGCACCTCGCGGAGAGATGACTGAGGGTGGAGAAGGTGGCGAGAACCAGGGCGGTCCAGACCAGGGCAACAAACCAATGAGGCAGAACTACTACAGAGGCTTCCGACCAAGCAGAGGTGGTGGTCCACCCCGTCCCAGACCAGTACGGGACGGCGAGGGGGAAAACAAGGAGAACCAGGGTGGTGACGGCGAGAACCAGGAGCCCCGCCAGCGCCGCTACCGCCGAAACTTCAACTACCGCCGCAGACGCCCACAGACCGGTGGCAAGCCCCAGGATGGCAAGGAGGCCAAGGCCGACGGCGAACCATCCCTTGAGAAAACGTCCGCTCCCGCAGCCGAGCAGGGCGGGGCTGAGTAGAAACTACCGGCATACCATCTCTACCATCGTCCGGTAATGTCATCAAGAAGAAACATCAAAGATCTGAGCAATAAGAAACAGATTTGACTTGACGATCGTCTTAAGCTTGTACCATGCATTTGACCGGATTACCACCGATTTGCCTGCAGAATCTATGCAGACCTGTTTTGTTCCATTATTTTTACGTGACagctataaaaataaaaaaaaaagttttgagGAAACGGAAGACGTTTTTTTTCTAAATCGGTCCTAAGTTTTTACACAATGGTTTTTAAAAGAAAAGTAATTTGATATCTGGTCAGTttgacatttttaaaaaactttttatGTATTCAAACATGAATTTGAACAAAATGCAAGCTCAAATAAAAGTCAAAGAAGAACTGG
>XM_021564395.2
TATGGATAGGGATATTCCTTTGCGCTGTTTGTCATTCCTCCCAGTTCGATCGGCAACGGGAGCGGAGAGGAAAGTTGAGAGTCCGAAGGCAGCAGCCCCTACCACCGCCGGCCCAGGTTACCATCTAGAACCGGGAAACACACTAGAAAGCCACCGCCGGCAAAAGCCATAACCAACCAGAAAACATGAGCAGCGAGGCCGAGACACAACCGCCGGAGCCTGCTGTCGTCGACGCGGAGAGCCCATCCAGCCCGGCGGCAGCCGCCGTTTCCGCGGGGGATAAGAAGGTCATCGCAACTAAGGTCTTGGGCACAGTCAAATGGTTCAACGTCAGAAATGGCTACGGTTTCATCAACAGGAACGACACAAAAGATGACGTCTTTGTCCACCAGactGCCATAAAGAAAAACAACCCAAGGAAATACCTTCGCAGTGTTGGAGATGGAGAAATTGTGGAGTTTGATGTGGTTGAAGGGGAGAAGGGAGCAGAGGCAGCCAATGTCACCGGCCCAGCGGGTGTCCCAGTCCAGGGGAGCAAGTATGCCGCTGACCGGAACCGCTATAGGCGGTACCCCCGCAGGAGGGGCCCAGCCCGTGACGGCGAATACCCAGACAACTACCAGAGCGACGGTGAGGGCGAAGGAGATCGGCCCCCCCGCAAGAGCCGTGAGGGCGCCGAGAGCGCcccagagggagagatgcagaccCAGCAGCGCAGGCCCTCCTTCCCTGGGAGACGGCGCTACCCCCCATACTTTGGTGGAGAAGGTGGCGAGAACCAGGGCGGTCCAGACCAGGGCAACAAACCAATGAGGCAGAACTACTACAGAGGCTTCCGACCAAGGTTCAGACCAAGCAGAGGTGGTGGTCCACCCCGTCCCAGACCAGTACGGGACGGCGAGGGGGAAAACAAGGAGAACCAGGGTGGTGACGGCGAGAACCAGGAGCCCCGCCAGCGCCGCTACCGCCGAAACTTCAACTACCGCCGCAGACGCCCACAGACCGGTGGCAAGCCCCAGGATGGCAAGGAGGCCAAGGCCGACGGCGAACCATCCCTTGAGAAAACGTCCGCTCCCGCAGCCGAGCAGGGCGGGGCTGAGTAGAAACTACCGGCATACCATCTCTACCATCGTCCGGTAATGTCATCAAGAAGAAACATCAAAGATCTGAGCAATAAGAAACAGATTTGACTTGACGATCGTCTTAAGCTTGTACCATGCATTTGACCGGATTACCACCGATTTGCCTGCAGAATCTATGCAGACCTGTTTTGTTCCATTATTTTTACGTGACagctataaaaataaaaaaaaaagttttgagGAAACGGAAGACGTTTTTTTTCTAAATCGGTCCTAAGTTTTTACACAATGGTTTTTAAAAGAAAAGTAATTTGATATCTGGTCAGTttgacatttttaaaaaactttttatGTATTCAAACATGAATTTGAACAAAATGCAAGCTCAAATAAAAGTCAAAGAAGAACTGG
>NM_001165040.1
ATCGGCAACGGGAGCGGAGAGGAAAGTTGAGAGTCCGAAGGCAGCAGCCCCTACCACCGCCGGCCCAGGTTACCATCTAGAACCGGGAAACACACTAGAAAGCCACCGCCGGCAAAAGCCATAACCAACCAGAAAACATGAGCAGCGAGGCCGAGACACAACCGCCGGAGCCTGCTGTCGTCGACGCGGAGAGCCCATCCAGCCCGGCGGCAGCCGCCGTTTCCGCGGGGGATAAGAAGGTCATCGCAACTAAGGTCTTGGGCACAGTCAAATGGTTCAACGTCAGAAATGGCTACGGTTTCATCAACAGGAACGACACAAAAGATGACGTCTTTGTCCACCAGactGCCATAAAGAAAAACAACCCAAGGAAATACCTTCGCAGTGTTGGAGATGGAGAAATTGTGGAGTTTGATGTGGTTGAAGGGGAGAAGGGAGCAGAGGCAGCCAATGTCACCGGCCCAGCGGGTGTCCCAGTCCAGGGGAGCAAGTATGCCGCTGACCGGAACCGCTATAGGCGGTACCCCCGCAGGAGGGGCCCAGCCCGTGACGGCGAATACCCAGACAACTACCAGAGCGACGGTGAGGGCGAAGGAGATCGGCCCCCCCGCAAGAGCCGTGAGGGCGCCGAGAGCGCcccagagggagagatgcagaccCAGCAGCGCAGGCCCTCCTTCCCTGGGAGACGGCGCTACCCCCCATACTTTGGTGGAGAAGGTGGCGAGAACCAGGGCGGTCCAGACCAGGGCAACAAACCAATGAGGCAGAACTACTACAGAGGCTTCCGACCAAGCAGAGGTGGTGGTCCACCCCGTCCCAGACCAGTACGGGACGGCGAGGGGGAAAACAAGGAGAACCAGGGTGGTGACGGCGAGAACCAGGAGCCCCGCCAGCGCCGCTACCGCCGAAACTTCAACTACCGCCGCAGACGCCCACAGACCGGTGGCAAGCCCCAGGATGGCAAGGAGGCCAAGGCCGACGGCGAACCATCCCTTGAGAAAACGTCCGCTCCCGCAGCCGAGCAGGGCGGGGCTGAGTAGAAACTACCGGCATACCATCTCTACCATCGTCCGGTAATGTCATCAAGAAGAAACATCAAAGATCTGAGCAATAAGAAACAGATTTGACTTGACGATCGTCTTAAGCTTGTACCATGCATTTGACCGGATTACCACCGATTTGCCTGCAGAATCTATGCAGACCTGTTTTGTTCCATTATTTTTACGTGACagctataaaaataaaaaaaaaagttttgagGAAACGGAAGACGTTTTTTTTCTAAATCGGTCCTAAGTTTTTACACAATGGTTTTTAAAAGAAAAGTAATTTGATATCTGGTCAGTttgacatttttaaaaaactttttatGTATTCAAACATGAATTTGAACAAAATGCAAGCTCAAATAAAAGTCAAA

Function

NR:

description
Y-box binding protein

GO: NA

KEGG:

id description
K09276 YBX1, NSEP1; Y-box-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564393.2 False 1556 mRNA 0.54 8 37218796 37228315
XM_021564394.2 False 1544 mRNA 0.54 8 37218796 37228315
XM_021564395.2 False 1493 mRNA 0.54 8 37218796 37228315
NM_001165040.1 True 1423 mRNA 0.54 8 37218806 37228267
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110492898 LOC106567320 coding downstream 170679 37046699 ~ 37048117 (-)
LOC110492897 LOC106567319 coding downstream 180529 37036862 ~ 37038267 (-)
LOC110491877 NA coding downstream 856574 36351765 ~ 36362222 (-)
LOC110491872 LOC106566950 coding downstream 1141098 36071627 ~ 36077698 (-)
LOC110491868 LOC106566949 coding downstream 1224786 35474174 ~ 35994010 (-)
LOC110491882 LOC106572212 coding upstream 72550 37300865 ~ 37302929 (-)
LOC118939528 NA coding upstream 369371 37597686 ~ 37604276 (-)
LOC110491896 LOC106566965 coding upstream 394518 37622833 ~ 37634876 (-)
LOC118939599 NA coding upstream 455204 37683519 ~ 37683637 (-)
LOC118939459 LOC106600248 coding upstream 458035 37686350 ~ 37687854 (-)
G1370554 NA non-coding downstream 18671 37199813 ~ 37200125 (-)
G1370552 NA non-coding downstream 20729 37197795 ~ 37198067 (-)
G1370551 NA non-coding downstream 21339 37197040 ~ 37197457 (-)
G1370550 NA non-coding downstream 22126 37196233 ~ 37196670 (-)
G1370529 NA non-coding downstream 54777 37162557 ~ 37164019 (-)
G1370563 NA non-coding upstream 408 37228723 ~ 37228922 (-)
G1370574 NA non-coding upstream 21858 37250173 ~ 37250399 (-)
G1370575 NA non-coding upstream 22720 37251035 ~ 37251290 (-)
G1370578 NA non-coding upstream 24853 37253168 ~ 37253376 (-)
G1370585 LOC100380853 non-coding upstream 32624 37260939 ~ 37261182 (-)
G1369101 NA other downstream 1438360 35747976 ~ 35780436 (-)
G1369107 NA other downstream 1465855 35748857 ~ 35752941 (-)
LOC110491862 tnfrsf6b other downstream 2139191 35077807 ~ 35079706 (-)
LOC110491043 NA other downstream 3348898 33863087 ~ 33870055 (-)
G1370601 LOC106566960 other upstream 49330 37277645 ~ 37278677 (-)
G1370826 NA other upstream 432374 37660689 ~ 37661465 (-)
G1371532 NA other upstream 1055093 38283408 ~ 38284066 (-)
G1372845 LOC106566999 other upstream 1543313 38771628 ~ 38772877 (-)
G1372979 NA other upstream 1763277 38991592 ~ 38992220 (-)

Expression

LOC100305135(LOC100305135) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 600.
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LOC100305135(LOC100305135) Expression in each Bioproject

Bar chart with 21 bars.
LOC100305135(LOC100305135) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15000.
End of interactive chart.

Co-expression Network