LOC110491911 (LOC106566982)


Basic Information

Item Value
gene id LOC110491911
gene name LOC106566982
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 38426290 ~ 38448569 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565753.2
GCTATGGTGTCAGTCCCTGTTACAAAGTATTAGGGTTGGGTGTGACGTCAAGGCACAAGTGCCGCCGACCATTTTTTCTGGGAATTTTAAGGTTGACAAAATTGAGGAAACAACGACTGTTGAATGATCGGAGAACTCTGATAAAACAATTCTATCATCTGGGGTTGTCAGAACATGTTTGCGATGAGACATTTCAGCGGAGCAGAAAATATTGATTTAAAAATGTCATAATTTATCGGAACACACCAACAAAGACAACCGACATTCTGTTGCACATTACAATATTTTCGCCGCTGTTTATTTATTGTTGGATATTCATAGGCATAGGCGAATAGACTAATTGCTGAAGAGGCTGACCTAACCGTGCCACTTCCAACTTTTTCCGCATGAAGGTCCGTTCTTTCCCTTCTTTCGCAAAGCTGCATCAGACGAGCTGCCTCGCATGAGCCACCTCGGGGCGAGTGTTCTGCTCTGCCTGCTCGGGGAATCAGGATGAGAAAACCCAAAGTTGGACGAATGTTTCTGGCGACATGCGTTGGGTCACTTTTTATGGTCATATTGTACTTTCAGAACATCACAAGGCCAGCTGTGGAGCAGTCTGGGGGGAAGGGCATCGCCCCAGGGAAGACCAGGAGAAGTCCACTACAGACCCTCTACAACGGAGACCAGTTGGATTTGTCTGCAGTGCAGACGTCTCTGCGTGATCGGCGGGAGCTGCTGGAGCAGGCGTGTCTCACCCACACCAAGAAGCGACGGGTGTTGACCCCAGACGACCTCCGCCACCTCATCGTGGACGATAAGCATGGCCTGCTGTACTGCTACGTCCCCAAGGTGGCCTGTACCAACTGGAAACGCGTCTTCATGGTCCTGACGGGGGACGGACGCTACCACGAGCCCCTAGCCATCCCTGCCAACGAGGCCCACGTGGCTGGCAACCTGCGCACACTGTCAGAGTACTCCACCTCTGAGATCAACCGCCGTCTGCGCAGCTACCTGAAATTCATCTTTGTGCGGGAGCCCTTCGAGAGGCTAGTGTCGGCCTACCGCAACAAGTTCACCCGCAGCTACAACACGGCCTTCCACAAGCGCTACGGCACCAAGATAATCCGCCGGCATCGGCCCCAACCCCAGCCGGATGCGCTGGAGCGGGGCAACGACGTCTCCTTCCAGGAGTTTGTGTACTACCTGGTGGATCCccgcacacagagagaggagccctTCAACGAGCACTGGGAGCGGATCCACTCACTGTGCCACCCCTGCCTCGTCCACTACGATGTGGTGGGGAAGTATGAGACTCTGGAGCAGGACTCCCGCTCTGTGCTGCGGCTGGCTGGCACTGATGGGGAGGTCCGCTTCCCTACCTCAGGCAAGAGCACCAGGACCAACGGGGACATGGCGGCTCAGTTCTTCCAAAACATCAGCCCCTTTTACCAAAAGAAGCTGTACAACCTTTACCGCATGGACTTCCTGCTCTTCAATTACTCCAACCCAGAGTACTTGAAGACTAGATGAGGGCGACTCTCTCCATGTCAGCTAGAGATTTAGTCATCAATCTGTTTGGCTCTGTAATTTGTAATTAATCTGGGTGCGTAGAGCTTGTAATTGATGTTCCAGATGTTATTTATACAGGCCTTGCCAGTAGGGGGAATCACTACATTGTCAGATGTAAGAAGTTTATGAGCATAGGTGGCTGACCTTGGAGTCGCTATATTTGCTTTAATCCTCGTCATGTGGCCGAGATAAGAGAGAAGCAGGTTCTTCTTTTACAATTGAATGTGTCGAGGGTTGTAAAGAACTTGTTGTGTGTATCACAGAATCCCTCGACTATGCATTCTTTTTTATTTATACAATTGTAAGAGTATTTATTGTGAATATAGACTGAGCGCATTGGGTGAGGACAATCTAATTCATGCATTTCTTTCTGCTTGCACATACAGCATGTTTCTTTGGCTCTTGGACATCTTCTGTAGCCAAAAATGTTCCTCTGGGGGGACAAAGGGTGTCATAAAACTTACATAAACCACCAAACAAAAGAAAGCATAGTCCAcaaataaaaagaaagaaaaaacccCAATAAAAATAAGCTATTTACTCTCTATTGACAGAAGTATGAGGCTTGCACAGACCCAATATGAATTGAACCAGTTTAAATGGTATATCTTACATGGtagcgtttaaaaaaaaaaaaaacagtgaagTCCTCATTCATACTGTATCATGTCACAATTTTCCCACATTATAAAATGATTGCCACCTGTTCATTGATGTTACATAAGCCACAGTTGATAGTAAATATGTTCTGATACACAATGTATGCTGGTTATATAAAGCCTGGCAGGCAGATTGCCTGCAGATAGGGAGTTATTTACAGAAATGGCACATGCTTTGCAGAGTCACCTCTTTATTTAGCTCACGTCAGACTGAGCAAACGGTGCATAGCTGTGGTTTGGGCCAAGGCAGCCCCTCATCAGAGCACTCCTTGTTGAACTGTGGAAAGCCACCTAGGGctaactacctacctacagggGCACTACATGTTAAAACCAGGTAGGCCATCTGGTAAAAAGCTAATATTAAATTACATTTGTAGCATGCAGTATTTGTCTTGACTATGAGAGCAGTAAATAAAATGAGTTTTCATGACTGTTGATGTTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K01017 CHST11; chondroitin 4-sulfotransferase 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565753.2 True 2658 mRNA 0.47 3 38426290 38448569
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110491907 LOC106566978 coding downstream 267136 38138352 ~ 38159154 (-)
LOC110491903 LOC106566975 coding downstream 383966 38036060 ~ 38042324 (-)
LOC110491902 LOC106566972 coding downstream 502324 37914783 ~ 37923966 (-)
eif4ba LOC106566970 coding downstream 542047 37863465 ~ 37884243 (-)
tns2a LOC100380686 coding downstream 564841 37807984 ~ 37861449 (-)
mapk14a LOC106566983 coding upstream 23671 38472240 ~ 38509303 (-)
elapor1 kiaa1324 coding upstream 61090 38509659 ~ 38527874 (-)
LOC110491916 tmem167b coding upstream 83453 38532022 ~ 38533685 (-)
LOC110491052 LOC106566990 coding upstream 114256 38562825 ~ 38565104 (-)
mkrn4 LOC106566991 coding upstream 123183 38571752 ~ 38577509 (-)
G1372657 NA non-coding downstream 12229 38397595 ~ 38414061 (-)
G1372638 NA non-coding downstream 50284 38375597 ~ 38376006 (-)
G1371626 NA non-coding downstream 57160 38368908 ~ 38369130 (-)
G1371561 NA non-coding downstream 96996 38329024 ~ 38329294 (-)
G1371551 LOC106566980 non-coding downstream 113263 38311371 ~ 38313027 (-)
G1372728 NA non-coding upstream 204229 38652798 ~ 38661225 (-)
G1372727 NA non-coding upstream 204896 38653465 ~ 38657114 (-)
G1372865 NA non-coding upstream 354713 38803282 ~ 38832596 (-)
G1372915 LOC106572725 non-coding upstream 417608 38866177 ~ 38869531 (-)
G1371532 NA other downstream 142224 38283408 ~ 38284066 (-)
G1370826 NA other downstream 764825 37660689 ~ 37661465 (-)
G1370601 LOC106566960 other downstream 1147613 37277645 ~ 37278677 (-)
LOC110491868 LOC106566949 other downstream 2432819 35474174 ~ 35994010 (-)
G1369101 NA other downstream 2645854 35747976 ~ 35780436 (-)
G1372845 LOC106566999 other upstream 323059 38771628 ~ 38772877 (-)
G1372979 NA other upstream 543023 38991592 ~ 38992220 (-)
si:dkey-157g16.6 LOC106567002 other upstream 564799 39013363 ~ 39043903 (-)
G1373200 NA other upstream 973581 39422150 ~ 39422852 (-)
G1373226 LOC100380735 other upstream 1081355 39529924 ~ 39535299 (-)

Expression

LOC110491911(LOC106566982) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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LOC110491911(LOC106566982) Expression in each Bioproject

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LOC110491911(LOC106566982) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
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Co-expression Network