LOC110491945 (LOC106567025)


Basic Information

Item Value
gene id LOC110491945
gene name LOC106567025
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 39727913 ~ 39732807 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565836.2
TGTCAACACAGCCACGTTCCCAAAATGCATTGCGCTGATACGGTGCGTTAGTCTAAAAGCCGACATAGACTTTTTGAAGGAAGACGTGTCTGTAACAACTGCTGAAATAACTAGCTGCGGAAGTCTTTGTCGTGTTAAAGACATTTTGAGAAATCAACCATGATGATCAAAATAGCCGCGTTTCTTGCTCTTGTCTGCTTGTGCACAGGAGAGAGCTGTTCAGACCCTGTGATCACCCCCTCTGCCTACACCACCTCTGATGCCGTCATCTCCTCTGAGTCTGTCTTTATCGTGGAGCTCAGCCTGGCCTGCACCAATGGCGCCCAGAGTGTGGCTCTGTATGCTGACGTCAATGGCAGACAGTTCCCCGTGACCAGAGGCCAGGATGTTGGCAAGTACCAGGTGTCCTGGAGCATGCCCCACAAACAGGCTAGCTCCGGTACATACCAGGTCAAATTCTTTGATGAGGAGTCCTATAGCTCTTTGCGCAAGgcCCAGAGGAACAATGAGGATAGTGACTCAATCcagcctctcttctctgtcaACGTGGATCACAGGGGTGCATGGAATGGCCCGTGGGTGGCTACTGAGGTTATGGCTGTTCTCATCGGTATCCTGCTCTACTACCTGGCCTTCAATGCTAAAAGCACCATCCAGGCATAAAGGACTGCAAGTCCCACAATTCTCTGCAACTGGAACTCTAAAATACTGTTGAATTCTGGTGTGACTTTTCTACCAATCCAGAACAACAATTTGCCACCATCCATTTCGAGATGCGGAACTAGttgttttatattttgtatttacattttttaagcAGAAGAAGCTATTGCATTGTGTCAAGTTGTGGTAAAAACTGCACACCTCAATCAAACCCGCTGTACCCCACAAACTGAATTGAGCACAGTAATTTTGTGTTCAAAAGCAAACCCAGGTCCTGAAAGTTAAAGGACTGTTTCTATATGCCAACACTGACTTCCTTTCATAGCCTCAGGCTTATTGTTTACCTACCGGTGGACTTGGCCTCTGAGAGACAAGAGTATCTGTCCATCATTCTGTGGTCTTTCTTGTGAAGGACCTTCATTGGTACTGATTCTACACAGTCTAAAATGACTGGTTCTGTATCTACAAGAGTCTTGAGTAGGAGTGCTGCTCTAAGATCAGTTCCCCCATTTTCTATTCATTATGATCTGAATAGCaatactgatcctagatcagaactcaTACGCTGAGATACTGTGAATACGGACACTGGTGTTTAAGAGTCTGATGCCACTGTGGACTTGTCAGTTGCTGACTGGCTGTGTCTTACCGACAGTACATGGAACTGTTGCACTGGCTCGCCGAAGAGGCCAAATATTCAAGTATTGGTGATTATTTTTGCTTGGTGGTCAAATTAATAAATGGTTTGCTTTTCTCCTA

Function

NR:

description
translocon-associated protein subunit delta-like

GO:

id name namespace
GO:0042221 response to chemical biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K04571 SSR4; translocon-associated protein subunit delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565836.2 True 1422 mRNA 0.46 6 39727913 39732807
Loading

Neighbor

gene id symbol gene type direction distance location
zgc:158263 LOC106567014 coding downstream 164669 39551717 ~ 39563244 (-)
LOC110491935 LOC106567011 coding downstream 394231 39309981 ~ 39333682 (-)
LOC110492900 NA coding downstream 508279 39218685 ~ 39219634 (-)
LOC110491931 LOC106567008 coding downstream 509731 39213698 ~ 39218182 (-)
LOC118939532 NA coding downstream 580068 39124872 ~ 39147845 (-)
LOC110491943 LOC106567023 coding upstream 637 39733444 ~ 39751919 (-)
LOC110491953 NA coding upstream 228817 39961624 ~ 39992363 (-)
ribc1 ribc1 coding upstream 320502 40053309 ~ 40064572 (-)
LOC110491948 LOC106567031 coding upstream 347883 40080690 ~ 40119070 (-)
LOC110491951 LOC106567033 coding upstream 388348 40121155 ~ 40131408 (-)
G1373368 NA non-coding downstream 20766 39706652 ~ 39707147 (-)
G1373350 LOC106567019 non-coding downstream 37384 39689052 ~ 39690529 (-)
G1373345 NA non-coding downstream 44632 39682861 ~ 39683281 (-)
G1373332 LOC106575828 non-coding downstream 75161 39651836 ~ 39652752 (-)
G1373313 LOC106567018 non-coding downstream 116710 39605425 ~ 39611203 (-)
G1373446 NA non-coding upstream 102767 39835574 ~ 39835871 (-)
G1373448 NA non-coding upstream 103544 39836351 ~ 39836738 (-)
G1373494 LOC106567026 non-coding upstream 197428 39930235 ~ 39930896 (-)
G1373493 LOC106567026 non-coding upstream 198344 39931151 ~ 39931850 (-)
G1373529 NA non-coding upstream 225160 39957967 ~ 39960455 (-)
G1373378 NA other downstream 6936 39719864 ~ 39720977 (-)
G1373226 LOC100380735 other downstream 192614 39529924 ~ 39535299 (-)
G1373200 NA other downstream 305061 39422150 ~ 39422852 (-)
si:dkey-157g16.6 LOC106567002 other downstream 705746 39013363 ~ 39043903 (-)
G1372979 NA other downstream 735693 38991592 ~ 38992220 (-)
G1373490 LOC100380641 other upstream 207415 39940222 ~ 39943028 (-)
G1374237 LOC106567042 other upstream 790190 40522997 ~ 40525278 (-)
rps26 LOC106567051 other upstream 1119951 40852758 ~ 40854671 (-)
G1374491 LOC106567058 other upstream 1293968 41026775 ~ 41029406 (-)

Expression

LOC110491945(LOC106567025) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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LOC110491945(LOC106567025) Expression in each Bioproject

Bar chart with 21 bars.
LOC110491945(LOC106567025) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
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Co-expression Network