LOC110491955 (LOC106567035)


Basic Information

Item Value
gene id LOC110491955
gene name LOC106567035
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 40181926 ~ 40194006 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565852.2
CACGGCCACTGGTTATGCGCACTGCGCAGATGCAGCAGAGGAGCTATGACAAGCAAGTAAACACTGCTGGGGCTGTGCTAGTACTAGTAGGGCTTTTCCTTGCTGTCGACCCCTCACATTCTTCCAGCTCCCGACGTCTTCGACAACACTCCAACAGCCACAGATATGTCTGACTTCTCAGAAGATCAAATCATGGaGTTTAAGGAGGCTTTCCTCCTCTTCGACAGAACCGGCGATGGGAAGATCAGTTACAGTCAGTGCGGCGACGTCATGCGGGCGTTGGGCCAGAACCCCGTCAATGCAGAGGTCCTCAAGGTCCTGGGCAACCCCAAGGCTGAGGAGATGAACCACAAGATGCTTGACTTTGAGCAGTTCCTGCCCATGCTGCAGGCCATCGCTAAGAATAAGGACCAGGGCTCCTTTGAGGATTTCGTTGAGGGACTGCGAGTCTTTGATAAGGAGGGCAACGGCACCGTAATGGGGGCAGAGCTGCGTCACGTCCTCACCACACTAGGGGAGAAGATGACGGAGGAGGAGGTCGAGACGCTTCTTGCCGGACACGAGGATGCTAATGGCTGTATTAACTATGAAGAACTCGTCCGGATGGTCATGAGCGGTTGAAGATCGGGAAGAACATTCCTTCCTATTCTTCGTTTTCACCCTGTTTATTTCTGTGACGCATTTCCCCTCCTTTTTGCAACTAGTTTCCAGTCCTGCCCGTTTCCTGTGCAATTTTATTAGTTCTTCacgtctcttttttttctttttttcaaaaGTGCCTTTACATGCCCAAGTTAAGACCATTAGCGACCCAAGcttcttttaaaaaaatgttttatgcgTCAGCCTGGTCCATTGAATTAAGAATAAGACCAACTTGCATGTAATTAGAAGCTTGTGTGCTGCTGGCGTGACCAGCAATAACATTCCGAGAGAGAGCACTTCATACCAACTGTTTGCACCGTCTTGCCAGTTGCCAACTCTGTCAATGGTATGACAGTGACAGCAATGGAGTGGTCGAGACGGCACAAAaaggatctgagaccaggctaatgAAGACTTGCTTTGGCTGGGAATGTCTCCCTTCCTATCGCTGCCAGAGCTATGCAGTTAGTTAACCAATATGTATAAGAAGCCATACAATCATGACGACATAGAAATCCATACGCGGTTCAGTGGatttttttccttttttcttcCATTTATTTGTTGCAgcgttcaaataaaaaaaaaatgattttctgaagaaaaaa
>XM_021565851.2
GCACGGCCACTGGTTATGCGCACTGCGCAGATGCAGCAGAGGAGCTATGACAAGCAAGTAAACACTGCTGGGGCTGTGCTAGTACTAGTAGGGCTTTTCCTTGCTGTCGACCCCTCACATTCTTCCAGCTCCCGACGTCTTCGACAACACTCCAACAGCCACAGATATGTCTGACTTCTCAGAAGATCAAATCATGGaGTTTAAGGAGGCTTTCCTCCTCTTCGACAGAACCGGCGATGGGAAGATCAGTTACAGTCAGTGCGGCGACGTCATGCGGGCGTTGGGCCAGAACCCCGTCAATGCAGAGGTCCTCAAGGTCCTGGGCAACCCCAAGGCTGAGGGTGAGGAGATGAACCACAAGATGCTTGACTTTGAGCAGTTCCTGCCCATGCTGCAGGCCATCGCTAAGAATAAGGACCAGGGCTCCTTTGAGGATTTCGTTGAGGGACTGCGAGTCTTTGATAAGGAGGGCAACGGCACCGTAATGGGGGCAGAGCTGCGTCACGTCCTCACCACACTAGGGGAGAAGATGACGGAGGAGGAGGTCGAGACGCTTCTTGCCGGACACGAGGATGCTAATGGCTGTATTAACTATGAAGAACTCGTCCGGATGGTCATGAGCGGTTGAAGATCGGGAAGAACATTCCTTCCTATTCTTCGTTTTCACCCTGTTTATTTCTGTGACGCATTTCCCCTCCTTTTTGCAACTAGTTTCCAGTCCTGCCCGTTTCCTGTGCAATTTTATTAGTTCTTCacgtctcttttttttctttttttcaaaaGTGCCTTTACATGCCCAAGTTAAGACCATTAGCGACCCAAGcttcttttaaaaaaatgttttatgcgTCAGCCTGGTCCATTGAATTAAGAATAAGACCAACTTGCATGTAATTAGAAGCTTGTGTGCTGCTGGCGTGACCAGCAATAACATTCCGAGAGAGAGCACTTCATACCAACTGTTTGCACCGTCTTGCCAGTTGCCAACTCTGTCAATGGTATGACAGTGACAGCAATGGAGTGGTCGAGACGGCACAAAaaggatctgagaccaggctaatgAAGACTTGCTTTGGCTGGGAATGTCTCCCTTCCTATCGCTGCCAGAGCTATGCAGTTAGTTAACCAATATGTATAAGAAGCCATACAATCATGACGACATAGAAATCCATACGCGGTTCAGTGGatttttttccttttttcttcCATTTATTTGTTGCAgcgttcaaataaaaaaaaaatgattttctgaagaaaaaa
>XM_021565848.2
TTACGAACTCCAGAAATGGCCCCAAAAAGAGAACCATCTATTAAGAAGACTCCATCGCCTGTGGCCCAGCAGCCCAGACTAGGGCCTCCTTTCCCTTGCCTCTCCTCAGCTAACCCTGCCCAGCCAAGGTCAGCTCCTGAACAGAAACCCAGGATGCTGCGACCCTCTGATTCTCCATTTGACCCCAGCACCATGGAGATTGAGTTTAACCTGGATCAAATACACGaGTTTAAGGAGGCTTTCCTCCTCTTCGACAGAACCGGCGATGGGAAGATCAGTTACAGTCAGTGCGGCGACGTCATGCGGGCGTTGGGCCAGAACCCCGTCAATGCAGAGGTCCTCAAGGTCCTGGGCAACCCCAAGGCTGAGGGTGAGGAGATGAACCACAAGATGCTTGACTTTGAGCAGTTCCTGCCCATGCTGCAGGCCATCGCTAAGAATAAGGACCAGGGCTCCTTTGAGGATTTCGTTGAGGGACTGCGAGTCTTTGATAAGGAGGGCAACGGCACCGTAATGGGGGCAGAGCTGCGTCACGTCCTCACCACACTAGGGGAGAAGATGACGGAGGAGGAGGTCGAGACGCTTCTTGCCGGACACGAGGATGCTAATGGCTGTATTAACTATGAAGAACTCGTCCGGATGGTCATGAGCGGTTGAAGATCGGGAAGAACATTCCTTCCTATTCTTCGTTTTCACCCTGTTTATTTCTGTGACGCATTTCCCCTCCTTTTTGCAACTAGTTTCCAGTCCTGCCCGTTTCCTGTGCAATTTTATTAGTTCTTCacgtctcttttttttctttttttcaaaaGTGCCTTTACATGCCCAAGTTAAGACCATTAGCGACCCAAGcttcttttaaaaaaatgttttatgcgTCAGCCTGGTCCATTGAATTAAGAATAAGACCAACTTGCATGTAATTAGAAGCTTGTGTGCTGCTGGCGTGACCAGCAATAACATTCCGAGAGAGAGCACTTCATACCAACTGTTTGCACCGTCTTGCCAGTTGCCAACTCTGTCAATGGTATGACAGTGACAGCAATGGAGTGGTCGAGACGGCACAAAaaggatctgagaccaggctaatgAAGACTTGCTTTGGCTGGGAATGTCTCCCTTCCTATCGCTGCCAGAGCTATGCAGTTAGTTAACCAATATGTATAAGAAGCCATACAATCATGACGACATAGAAATCCATACGCGGTTCAGTGGatttttttccttttttcttcCATTTATTTGTTGCAgcgttcaaataaaaaaaaaatgattttctgaagaaaaaa
>XM_021565849.2
TTACGAACTCCAGAAATGGCCCCAAAAAGAGAACCATCTATTAAGAAGACTCCATCGCCTGTGGCCCAGCAGCCCAGACTAGGGCCTCCTTTCCCTTGCCTCTCCTCAGCTAACCCTGCCCAGCCAAGGTCAGCTCCTGAACAGAAACCCAGGATGCTGCGACCCTCTGATTCTCCATTTGACCCCAGCACCATGGAGATTGAGTTTAACCTGGATCAAATACACGaGTTTAAGGAGGCTTTCCTCCTCTTCGACAGAACCGGCGATGGGAAGATCAGTTACAGTCAGTGCGGCGACGTCATGCGGGCGTTGGGCCAGAACCCCGTCAATGCAGAGGTCCTCAAGGTCCTGGGCAACCCCAAGGCTGAGGAGATGAACCACAAGATGCTTGACTTTGAGCAGTTCCTGCCCATGCTGCAGGCCATCGCTAAGAATAAGGACCAGGGCTCCTTTGAGGATTTCGTTGAGGGACTGCGAGTCTTTGATAAGGAGGGCAACGGCACCGTAATGGGGGCAGAGCTGCGTCACGTCCTCACCACACTAGGGGAGAAGATGACGGAGGAGGAGGTCGAGACGCTTCTTGCCGGACACGAGGATGCTAATGGCTGTATTAACTATGAAGAACTCGTCCGGATGGTCATGAGCGGTTGAAGATCGGGAAGAACATTCCTTCCTATTCTTCGTTTTCACCCTGTTTATTTCTGTGACGCATTTCCCCTCCTTTTTGCAACTAGTTTCCAGTCCTGCCCGTTTCCTGTGCAATTTTATTAGTTCTTCacgtctcttttttttctttttttcaaaaGTGCCTTTACATGCCCAAGTTAAGACCATTAGCGACCCAAGcttcttttaaaaaaatgttttatgcgTCAGCCTGGTCCATTGAATTAAGAATAAGACCAACTTGCATGTAATTAGAAGCTTGTGTGCTGCTGGCGTGACCAGCAATAACATTCCGAGAGAGAGCACTTCATACCAACTGTTTGCACCGTCTTGCCAGTTGCCAACTCTGTCAATGGTATGACAGTGACAGCAATGGAGTGGTCGAGACGGCACAAAaaggatctgagaccaggctaatgAAGACTTGCTTTGGCTGGGAATGTCTCCCTTCCTATCGCTGCCAGAGCTATGCAGTTAGTTAACCAATATGTATAAGAAGCCATACAATCATGACGACATAGAAATCCATACGCGGTTCAGTGGatttttttccttttttcttcCATTTATTTGTTGCAgcgttcaaataaaaaaaaaatgattttctgaagaaaaaa

Function

NR:

description
myosin light polypeptide 6-like isoform X2

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K12751 MYL6; myosin light chain 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565852.2 False 1253 mRNA 0.47 6 40181926 40192481
XM_021565851.2 False 1260 mRNA 0.48 6 40181926 40192482
XM_021565848.2 False 1289 mRNA 0.48 6 40181926 40194006
XM_021565849.2 True 1283 mRNA 0.48 6 40181926 40194006

Neighbor

gene id symbol gene type direction distance location
LOC110491951 LOC106567033 coding downstream 50518 40121155 ~ 40131408 (-)
LOC110491948 LOC106567031 coding downstream 62856 40080690 ~ 40119070 (-)
ribc1 ribc1 coding downstream 117354 40053309 ~ 40064572 (-)
LOC110491953 NA coding downstream 189563 39961624 ~ 39992363 (-)
LOC110491943 LOC106567023 coding downstream 430007 39733444 ~ 39751919 (-)
neurod4 LOC106567036 coding upstream 15976 40209982 ~ 40213414 (-)
LOC118939474 LOC106572692 coding upstream 44081 40238087 ~ 40239129 (-)
LOC110491958 LOC106567039 coding upstream 242052 40434504 ~ 40443364 (-)
slc26a10 LOC106567041 coding upstream 265824 40459830 ~ 40480813 (-)
arhgef25a LOC106567043 coding upstream 333921 40527927 ~ 40656367 (-)
G1373637 NA non-coding downstream 2738 40176810 ~ 40179188 (-)
G1373621 NA non-coding downstream 37676 40144042 ~ 40144250 (-)
G1373620 NA non-coding downstream 37923 40143775 ~ 40144003 (-)
G1373617 NA non-coding downstream 40589 40141099 ~ 40141337 (-)
G1373612 NA non-coding downstream 52415 40128817 ~ 40129511 (-)
G1373655 NA non-coding upstream 33034 40227040 ~ 40227440 (-)
G1373656 NA non-coding upstream 35447 40229453 ~ 40229709 (-)
G1373685 NA non-coding upstream 97966 40291972 ~ 40350960 (-)
G1373689 NA non-coding upstream 170551 40364557 ~ 40377173 (-)
G1373717 NA non-coding upstream 185875 40379881 ~ 40380133 (-)
G1373490 LOC100380641 other downstream 238898 39940222 ~ 39943028 (-)
G1373378 NA other downstream 460949 39719864 ~ 39720977 (-)
G1373226 LOC100380735 other downstream 646627 39529924 ~ 39535299 (-)
G1373200 NA other downstream 759074 39422150 ~ 39422852 (-)
G1374237 LOC106567042 other upstream 328991 40522997 ~ 40525278 (-)
rps26 LOC106567051 other upstream 658752 40852758 ~ 40854671 (-)
G1374491 LOC106567058 other upstream 832769 41026775 ~ 41029406 (-)
G1375495 NA other upstream 1469742 41663748 ~ 41664049 (-)
LOC110492013 LOC106567078 other upstream 1660774 41852627 ~ 41857489 (-)

Expression


Co-expression Network