LOC110491986 (LOC106567061)


Basic Information

Item Value
gene id LOC110491986
gene name LOC106567061
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 41230602 ~ 41240310 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565896.2
cattagttaccacagccacaaagtcaaactTGGCTATTTCCTACAAATTAATTTGTAAGACATTTGCTTTTTGGTCCTAATTTAAGTTTAGTGTTATACATATGGttggcagtgtggttaaggttaggtttaaaatcacattttaaaaatatacattttagaaATAGGGATGTTTTTTTACTtagtggctgtggtaactagtgacgaccatgTTGTGGTTTTGAATGAGGAAGAAGCGGGAGAGGTTAGAGGTTATCGTTTAAtgagttattttttatttgaagtACTTTGGACTTCTTTGCTATTTAAGAAATATACATGGCATTGTCGAATGTGATAGTAGTGATTGAAATCCTAGTCGCTACAGCCACATAACCAGGATTGTTAGatagctagtttagctaaccacaAGCTAGCTAATTTCAAGGGACGGAGAACGGTAACTTGATAGCTAGCTGGTTAGCAGTGTTGTTTAGCTAACTAGCAACGATTTACTTTCCCCGGTTGAATGACGTTGGGTGGCTTTATGTGCTTTTTCCTGCGCTGGCAGGCGGGTTGGAAGCAACCATAGCGATACACATTTTCGCGGGCGGGAGGTTTTAAACTTCTCTAAACATGTTCAATAAATTTTATGAATTAATTGGAACGGGTTTCGCTAATCTCCGCAATGGAGTACCAGCTCCCGACCAACGAGATAATGATACACACGGAGTACAACAAGGTGGTCGGATAAGGACAAAAAGACCCATCGACTGTTTGGAGGATGGTGACCAAGATGACCTGGCAGTGAAGAGATTTCGGATGGGGGTCTTCATTGACACAGTGAAGACTGCAGCTGAAGGGGTGAAGAGCCATAGCTCCAACGTGGCATCCTGGGTACGGAATAGTGTGACTCCTACCTTGAGGAACATACTGCCCACTTCCCCAGACCCCCCTCCGGAAGAACACTTTCATGAAGAGCCAGCAAAAGAGCTTCAGCCTGAACCCTCAACTTCTGCACCTCGTTCCTCATCTGTCTGGGAAGAGACTGAGGTCCTTGAGGTGAGGTACTCTGATCCCCTGGATGGGATGTGTGTCGCTCCCTTGACAACTCTGGAATGGAGAAACTCTAAATCAGAGTCCTTTAGAATTGAGAAGACGATGATCGGATCGAAGGTTTGCAGACGGCAAGTGTGCATGGCTCTCACACATCGTGATGCGCCCAAAACGAATGGGCACTCTGTCAGTCTGCCTCATTCCTCCAGCAGTACCCCTAAGCCATGTCCCTCTACCCGTCTGGGCAGGAGCCACCTCAGAACACCTGCATCAACAAGCCAGTTGACCTCAGCAGGATGCAGCTCTTTCACCAGCATGTATGAGAAGTCCTTCCCCATCCGCGTTGTGCAGAGTCCTTCACACGGCAGCCCTTCCAACCGCCTCCTCAGAGCCGGGGCTCGCTGCACCGCGCAAGAGTCTGTCTGTGAGGAGGAGAAGATTGTGTACAGACAGCTGCTGGCCATGGTCTCAGGTGGCCAGTCCTTGTCGTTCCACAACGGCAGCCCCCATGGCTTTCCGCGTTCACACAGAGACTTcacCAGCTTCCTGAGCACCAGCAGGCATCTGCTCCAGTGTTCGTCCCCTACGGGGGCAGGAGATGCCTCCGAGGGCCCCAGTGAACCCCCAAGCCCCCGTCCAGAGTTCAGCCAGGGCTACAGCAACGTCCCCAGCCCAGGGAAGGGCTCCTCCAGTGGGGCAGGGAACCACACCTGGGCCCCCAACTCAGACCTCAGCCCCAGGGGACCAGAGACACTACAGTCTGCCCCCTCTCCAGCTACCCTACAAGACACCTCTTCTCAGGACACACAATCATCAGCGCATGATGGGGACTCCGTAATCATTGTGAAAGAGAAGAAGGGCAAAAAGCCATGCAGTTCAAGtgtGCCATGCTTCCAAGCTGAACTCTGGATCAAGGAATTGACTAGCATGTATGACTCTCGTGCCcgggagagacggaggcagatcGAGGAGCAGGAGGCCCTAGCTGCTCAACTGCTGAGACAGCGTCTGTCAGATGACAGCCAGCTGGGCAACAGGTCCGTGGAGCTGCATGTCAGAGTCCCTCTGGAGAAGGAGGTTCCTCTGGCTCCTCTCGTCGAGGGACCCAAACCCGCCGAGGAGTTCCCTGAGCTCACCGAGGATATGGAGGGGGAGGTGTGCCGGGCGCTGAGGGGAGGCAGCCAGGACGAGATGCTGAGTGAAGGATTCAGACTCACCATCACACGCAAAGACCTCCAGACACTCAGCCACCTCAACTGGCTCAACGACGAGGTGATCAACTTCTACATGAACCTGCTAGTGGAGCGCGGGAAGGATCCCGGCCTGCCGACGGTCCACACCTTCAACACCTTCTTCTTCCCCAAGCTCCGCGGCGCAGGCTACTCTGCCGTACGCCGCTGGACCAAAAAGATGGACATCTTCTCAGTGGACATCATACTGGTGCCCGTCCACCTCGGGGTGCACTGGTGCCTTTCTGTGGTGGATCTCCGTAAGAAGACTGTCACGTACTTTGATTCAATGGGAGGGAACAATGACGAAGCCTGCAGGATTTTGCTGCAATACCTGCAGCAGGAAAGCAAGGACAAGAAGGGCAAAGACCTGGATACGTCAGAATGGACTCTGCAAAGCAAGAAACGCAACGAGATTCCTCAGCAGATGAACGGAAGTGACTGTGGAATGTTCACCTGCAAATACGCTGAGTACATCACCAAAGACAAGCcaatcacatttacacaaAAACACATGCCCTACTTCAGGAGACGCATGGTCTGGGAGATATTGAATCGGAAACTATTGTGATGAAATTGGGAAGAGATTTCTGAACAGGTCAAGAGCGAGGAAGTGTCTGAAATGAGGACGGTGCCCATGACGCTGTGGCTGTTCCATTGCAGGAGGATACATTTATTGCAACCACAACCTCCTGTGTATTAGCAAGCAAAGGTCTCTCTTTCAATTTGGGGGTTGTTCTCATTTTACAAATGATACTCTGAAATGTTCCCGTCAGAGGATCGCGTCTAGTGAAGTTGGGCCAACCAGTGCAACTGCTTGTATTTTTGTCACTGTCGATATTTTTGTAAACTACTCAGAAGTATAATTCGACGAGAGCTTGGTGATGTGATGACTGTTAACACCTTTTATTTTTCTAGTCTACGGTCAACACCCCTTACCTGGTTCAATAAACTGGTTAAATGAGAGAACAGAGTTCGAGATGCAGTGACATTCTTTGCTTTATATCTGGAAACCCACATTTTGATAGTGGTTTTTAGCTAAATGGAAAATATATGCAACTGACCTCAGAGTATAATTTGTAAAAGGGTAGGCCTAGAAATGGCAGTGGTGTGTTTCCATACATTGCTATTGTGTGGTACTTGAGGTGACACGAGTATCCTCATTGGTTGATTGGACCCCATCAACAGATAAGCAGCCGTGATGCTTCCTTGACCAAGAGACCTGTTATTCCAAGAGTAAATTGTGTAACCTGAAATGTAAAGTCTATTTTGTTTTAATAAGCaaagcaacaaaacaaaaaaaacgttAGTGCATTTTTCTCTGGATATTTTCAACATGTGTATATACTGATGAGTATACAGTTTCTTGGATAATGTATTTAATATACATTTTGTACCTTTTTA

Function

NR:

description
sentrin-specific protease 1-like

GO: NA

KEGG:

id description
K08592 SENP1; sentrin-specific protease 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565896.2 True 3668 mRNA 0.48 17 41230602 41240310
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110491981 LOC106567057 coding downstream 52264 41038562 ~ 41178338 (-)
wnt1 LOC106567052 coding downstream 357209 40866655 ~ 40873393 (-)
rps26 LOC106567051 coding downstream 375931 40852758 ~ 40854671 (-)
LOC110491969 LOC106567048 coding downstream 399974 40790495 ~ 40830628 (-)
dhh dhh coding downstream 451656 40772993 ~ 40778946 (-)
LOC110491989 LOC106567063 coding upstream 2655 41242965 ~ 41248039 (-)
mfsd5 mfsd5 coding upstream 9627 41249937 ~ 41253783 (-)
LOC110491987 LOC106567064 coding upstream 22520 41262830 ~ 41278997 (-)
calcoco1a LOC106572538 coding upstream 145276 41385586 ~ 41395668 (-)
cbx5 LOC106567067 coding upstream 397527 41637837 ~ 41645221 (-)
G1374414 NA non-coding downstream 345554 40884836 ~ 40885048 (-)
G1374406 NA non-coding downstream 365892 40864425 ~ 40864710 (-)
G1374328 NA non-coding downstream 378873 40851276 ~ 40851729 (-)
G1374325 NA non-coding downstream 385190 40844398 ~ 40845412 (-)
G1374320 NA non-coding downstream 441701 40787227 ~ 40788901 (-)
G1374704 NA non-coding upstream 17093 41257403 ~ 41259375 (-)
G1374755 NA non-coding upstream 76870 41317180 ~ 41318652 (-)
G1374790 NA non-coding upstream 123623 41363933 ~ 41400154 (-)
G1374850 NA non-coding upstream 216076 41456386 ~ 41456611 (-)
G1375395 NA non-coding upstream 241567 41481877 ~ 41482286 (-)
G1374491 LOC106567058 other downstream 201196 41026775 ~ 41029406 (-)
G1374237 LOC106567042 other downstream 705324 40522997 ~ 40525278 (-)
LOC110491948 LOC106567031 other downstream 1145776 40080690 ~ 40119070 (-)
G1373490 LOC100380641 other downstream 1287574 39940222 ~ 39943028 (-)
G1375495 NA other upstream 423438 41663748 ~ 41664049 (-)
LOC110492013 LOC106567078 other upstream 614470 41852627 ~ 41857489 (-)
LOC110492054 LOC106567113 other upstream 1313249 42548642 ~ 42569532 (-)
LOC110492059 LOC106567118 other upstream 1531996 42767849 ~ 42773348 (-)
LOC110491060 LOC106567122 other upstream 1878578 43117471 ~ 43124619 (-)

Expression

LOC110491986(LOC106567061) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 50.
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LOC110491986(LOC106567061) Expression in each Bioproject

Bar chart with 21 bars.
LOC110491986(LOC106567061) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network