LOC110491987 (LOC106567064)


Basic Information

Item Value
gene id LOC110491987
gene name LOC106567064
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 41262830 ~ 41278997 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565897.2
taaaaggaaggagggagagagtgacagtAGAGTGAATTAACAGGGGACATATAGTGAGATGAGATGCACCCCTTTAACCAAACAGACACAACCGAAGTTGAGAGAGGACACCAGGAGCGAGTCCCATTTATTTCAGTTACCTGAAAACGTTATTGATGTGGGAGTGGTGGATTGGTGTATTATTGGGTGTGTCTAGCCTGGCTAAATTCAGTTCATTTTCGGAGATGCTGATGGGGCTGTGTATTCTTGGGATTTCAGAAAATCACTTGTTTGTTCTCGGCTTGTGACACTCAAATCCGCTGAACCAAGCAACTCACTAGTCTAGTAGCCTAGAGTTCTTCAGAGCGCAGAACGGATTCCGGTAGCTTCCGAGAAAATCTCTCCTGCACACCTGAGACAATTAGACATAACTGTTCTGCATAGCATACAGCTGGACATAACTGTGCTTACAGTATACGACGGAAGTTTCAGTCGTTTGGCAGATCAATACGATTGTCTTCAACCGCGCGCTCGTTCTATGGGTCAGTTATCCACGCACAACTAGTTCTCGACTCCTACCTGTCTCCACTTGAGTATTGATCCTGCAGCTATATATCGAAAAGTCAGCATCGTTCACCACAGCAAACAAAAGACACATCAAGAAACATGGACACTCCAGGTGGAGGTGTTATTCTGTATGCGCGCTCCTCCGGCAGCCCCAGCCCTGGCAGCCCGTCCAGTGGGTACCAGACCCagtccccctcctccaccctctcccagCCCTCCTCCCCAGAGGAAATCACCTTCACAGAACTCGGGCCCCTGGGGTCCCTGAAGggccagagagggggaggatgcacacctccatcatcctccaagcTGGTGTTCCACTTCCCAGAAGTCTACAATGTGGCTACATCAACGTCCACAAACCAGCACTCGTACCAACACCCCATCGCTGGGAAAAGGCCTAGTGGATTCACAGGACCTTTCACCAagactGGCGGTATGGTGCTcctgtgtacagtgtgtggagACATTGCATCTGGGTTCCACTACGGAGTGCACGCCTGTGAGGGTTGCAAGGGCTTCTTCCGTCGCAGCATTCAGCAAAACATCAACTACAAGATGTGTGTGAAGAACGAGAACTGCCTCATTATGAGAATGAACCGCAACCGCTGCCAACACTGTCGCTTCAAGAAATGCCTCTCCGTGGGCATGTCCAGAGATGCTGTGCGTTTTGGCCGTATCCCtaagagggagaagcagaggctTCTGGATGAGATGCAAAGCTACATGAACAGCCTGAATGAGTCTGCCACCATGGACATAGAGTCCTCCCCCGTCTCCGAAGCCCCTCCAAGCCCAGCAGAGGTTCCTTCTAAAGAGGCCATCAGAGCCATCTCGCGGGCCTATCAGGACATCTCTTCCAGCAGCCAAGACAGGGCAGCCAAGAGTGAACTCAACATCACCAACTTACCAACAACATCTCTGTTCAAGAGCAACACATCTCAGGAGACCAGCTACACCAATGGCTCTTCCCACCTCGGCTCTGACTCCACCCAGGGGTACCAGTCCTGTCCTGCAGGCCTTGCCCCTCACTGCCCAGACACCAATGACAACCACCATACGTTCCCCTCTGTGGACAAAAGTCGCTATAGTTGCCCAGCTACTTTGTCCAATCATGACCACGGACAGTCTAATGTGGGCACAACTCAACGGGGCAGCTCGGCCAATCACAACAGTTTCTCCATGAAGGAAGAGACCCAAGAGCCGCAAACTCAGACATCCTGTCCATGGAAATTAGCCGCTGGAACCAAAGTGCTGgCCTGTCCTCTCAATGCGTGTCCTGTATCTGCGGCCAGTCGTTCTGGACAGCAGATATGGGAGTCTTTCTCCCAGTGTTTCACCCCGGCAGTGAGGGAAGTGGTGGAGTTTGCTAAGGGTATCCCTGGCTTCCAGGAGCTCAGCCAGCACGACCAGGTCATGCTGCTCAAATCAGGCACCTTCCAGGTGTTGATGGTGAGGTTTTGTACAATGTTTAACCCTGAGGAGCGGACGGTGACCTTCCTGAATGGCCAGACGTACCCTCTGTCCACCCTGCGGGCGCTGGGGATGGGGGCGCTGCTCGACGCCATCTTTGACTTCAGTGAGAAGCTGGGAACTCTGAGGCTGGAGCCTGATGAGATGGCTCTGTTCATGGCTGTGGTGCTGGTCTCTGCAGACCTTTCTGGCATCGTTGATATGGGGGCAGTAGAACAGCTCCAGGAGGGGTTAATCCGTGCCCTGCATTCCCTCATCCACTGCCGTCGTCCCGACGAGAGCGTGTCCATCTTCCCCAAGCTGCTCCTGCACTTGCCCGACCTGCGCACCCTCAACAACCTGCACTCCGACAAGCTGCTGGCCTTCCGGATTGACTCGTGAAcagccctgaacacacacacacacacacatagcaatTCAGAACTCGCCGACCACCACCACTCTCTCAGGGCAAGACTTCCCAGGAGATTGAGGAACACTGACTTGGGCaatcaaacaacaacaacaaaaatgttcaAGGTGCATGTTTGAAAAAGGACAATAATTAATATATTGATCTCCATCCTGttttcatgcacacacacacacacaaccacacatggAGAAAGATAGTCTGTTAGAACGTACATCAGTGTTTTAGGCTTACCGTTACCCTTTTGGACAGATGTGTATGGCAGTTTACCCGTTGTTTTCCAGTCTTTAAGAGACCAAAAGTCTAATCCTAATCTCCCGACCATTGCCAAACCACAGttgagagagaatcagagaggaagatgtttgTGGACAATGATAAGTTTAGGGACCATTATTGGTGACTGAATGTGTGGGTGTTTAGTGTTTGTATAAGAGAAAGGGACCCTGTATATAATAATACATACAATTTACACTTAAGTTCATATGACTCCCATTTCACTTATAAACACATCTGGGGTTTAAATATACAATTAAGACTCAAATATATTCAACAGACAAATTGCATATAGAAATGCGATATTCTGTATATtggcaaatcaaattgtatttgtcacattcacatgtttagcagatgttattgcaggtgtagagaaatgcttgtgtttctagctccaacagtgcagtaatatctaacaatac

Function

NR:

description
nuclear receptor subfamily 1 group D member 1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0007165 signal transduction biological_process
GO:0038023 signaling receptor activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565897.2 True 3135 mRNA 0.50 8 41262830 41278997

Neighbor

gene id symbol gene type direction distance location
mfsd5 mfsd5 coding downstream 9047 41249937 ~ 41253783 (-)
LOC110491989 LOC106567063 coding downstream 14791 41242965 ~ 41248039 (-)
LOC110491986 LOC106567061 coding downstream 22520 41230602 ~ 41240310 (-)
LOC110491981 LOC106567057 coding downstream 84492 41038562 ~ 41178338 (-)
wnt1 LOC106567052 coding downstream 389437 40866655 ~ 40873393 (-)
calcoco1a LOC106572538 coding upstream 106589 41385586 ~ 41395668 (-)
cbx5 LOC106567067 coding upstream 358840 41637837 ~ 41645221 (-)
nfe2 LOC106567066 coding upstream 370200 41649197 ~ 41657737 (-)
znf740b LOC106567069 coding upstream 409249 41688246 ~ 41697155 (-)
zgc:174906 LOC106567072 coding upstream 421398 41700395 ~ 41704276 (-)
G1374704 NA non-coding downstream 3455 41257403 ~ 41259375 (-)
G1374672 NA non-coding downstream 21044 41185859 ~ 41241786 (-)
G1374671 NA non-coding downstream 21658 41184380 ~ 41241172 (-)
G1374414 NA non-coding downstream 377782 40884836 ~ 40885048 (-)
G1374406 NA non-coding downstream 398120 40864425 ~ 40864710 (-)
G1374755 NA non-coding upstream 38183 41317180 ~ 41318652 (-)
G1374790 NA non-coding upstream 84936 41363933 ~ 41400154 (-)
G1374850 NA non-coding upstream 177389 41456386 ~ 41456611 (-)
G1375395 NA non-coding upstream 202880 41481877 ~ 41482286 (-)
G1375396 hoxc10aa non-coding upstream 210005 41489002 ~ 41494077 (-)
G1374491 LOC106567058 other downstream 233424 41026775 ~ 41029406 (-)
rps26 LOC106567051 other downstream 408241 40852758 ~ 40854671 (-)
G1374237 LOC106567042 other downstream 737552 40522997 ~ 40525278 (-)
LOC110491948 LOC106567031 other downstream 1178004 40080690 ~ 40119070 (-)
G1373490 LOC100380641 other downstream 1319802 39940222 ~ 39943028 (-)
G1375495 NA other upstream 384751 41663748 ~ 41664049 (-)
LOC110492013 LOC106567078 other upstream 575783 41852627 ~ 41857489 (-)
LOC110492054 LOC106567113 other upstream 1274562 42548642 ~ 42569532 (-)
LOC110492059 LOC106567118 other upstream 1493309 42767849 ~ 42773348 (-)
LOC110491060 LOC106567122 other upstream 1839891 43117471 ~ 43124619 (-)

Expression

LOC110491987(LOC106567064) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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LOC110491987(LOC106567064) Expression in each Bioproject

Bar chart with 21 bars.
LOC110491987(LOC106567064) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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Co-expression Network