cbx5 (LOC106567067)


Basic Information

Item Value
gene id cbx5
gene name LOC106567067
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 41637837 ~ 41645221 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946915.1
GGGTGTGGGCTTACGTTTTATCAAAACGTTATGTAGACGTCACttcaattccattccattcccAGGCTAGTCTGTGTAAATTTAAACAAATAGGCTATTTGATAGAAGTAATTCCAAAAAATACGTCCGCATATTTCCTAAGTGAACATAGCTACAACATTTACTGATTAACTCCTAGTTATCTGGCTTGACGGTTTCGTGATCGTGCACGGTCTGCCATTGTGCATTTTGGCGCTCGCTTTCTCGCACGGCGAGGCAAACAAGCAAGTCGTTTGGGGAGGGGAAACGAAAAGCCCAGCAACAGCGTCAAGAAAACGAACCAGTAAACCGCTAAAGCTAGCACGGGTTTTATTTCAAACTTTCCATTTCCAAGTTGGGACGTGCCCCTTGTTCACTCATTTGAGGTACCGCTACCAAATCATGGGAAAGAAGACTCGTGAAAATGATGATGATGCCTCGGGCTCATCTTCAGAAGAGGAAGAATTTATTGTGGAGAAGGTTCTGGACAGAAGGACGGTGAAGGGCCGAGTTGAATTCTTCCTTAAGTGGAAAGGTTATTCAGAAAAACACAACACATGGGAGCCAGAGAAGAATCTTGGCTGCCCCGAGCTCATTGCTGAGTTTATGAAGACTTACAAGAAGCCTAGCGGCGGTGCCACCCCCAGCAGCGGAGGAGCCAAGTCCAGTGCGGGATCATCAGGTCGTAGCAAGGAAGGCAGCAGCAAGAGGAGAAACTCTGACGATGATGAGGAGGGGAGCAGCAACAAGCCCAAACGGAAAAAAGAGGATGACGTCCTGATTGCGAGAGGCTTTGAGAGAGGTCTGGAACCAGAGAAGATTATTGGAGCCACAGACTCCTGTGGAGACCTCATGTTCCTCATGAAGTGGAAGGACTCTGATGAGGCAGATCTGGTGCTGGCCAAGGAGGCCAATCACAAGTGCCCGCAGATCGTCATAGCTTTCTACGAAGAGCGCCTCACCTGGCATGAAGACGGGGATAAGAAGGAGAAGGGCACTGTGAGCATGTAAGCAGGAAGTGTCGTCACAGGAATGgtcactgacccccccccctgcagggATGACCTGGAGACACTCATATAGCCAGTACCTAATCGCACCCTATTCCTCTCCTTGGCCTTAACACTTCTTTTTTTATGATAAcctttttcttttctcttttaTGGCTTGGGTAGGTAGGTGtaagtagtgtagtggtatattTTCCACCACATTGCTTCTACCTTTACAGCTCTGACAACAGTGAAGAGTTAAGGCAACATGGAGGATTTGAGTGCGATTTGGGACTGAAAggaccccaccccccccccccccccccccccccttgctaaTGACCATAACAAAAACCACACAAACCAACGATGGACGACACTGCCCACTTCTTCATGATACCTCCCTCTGTGCCCCAGTGTACAGGTTAATGTCCCTGAATAACAAAGAGCCCAATCTAGCCATTTTACACACAAACTGAGAAGGATGAGGGAAGACTGTGGGTTTTGGAGGTGGTGAAACAGGTTGGCTGCGCTCGCTACTGGGGACGGCTTGTCTTTCCTCTTGCTTTATTCCCTTTCTGTATTTTTGTGTAAGTACGATTCTTGATTCTGTGGTACCCTGTCTAGGTACTGGCAGCCATCTTAAGGTGACTTGAAGGTAGTCGTCTTAACTAATAGGTAACGTTAAAATGGCCACGTCTATCAAAGCATGGTCCAGTGCCCAGTATGAAATTCCCGCCTACTTCCTGAATCATGTACTTGCAGTTTTTGAATGCGATTCAAGAGTAAATCATGAAAAAGTGTTgtgcaagtcagttacgaacaaattcttatttacaatgacggcctaccccggccaaaccctaacacggacgacgttgggccaattgtgcgccgccaccCTACGCATATATTTGTTTACGTGGATTCATTTACTTCTACCTTCATGAAGGCCATCAGTTCGGAGTAAATGAATCTACTAATATGATTTTACATGCATCTTTAAGCCCTTTTTCATGAATTTGATATACTCTGGGATTCCATTCAAAAACGGCCTGGGACATGATCCATAGCGGAAGTAGGGGGGACTTTCATAAAGCATTCACAAATcgagcgtctcagagtaggagtgctcaTCCACCTGTCCATATATTCTTATTCATTGTTATCTTAAAaggtcaaaaaaataaataaactgatcctagatcgggCACTCTGGTGGAAACTTTGAATGCGAGCCCTTGACGTGTTTGCCCTGGGAAGATGACCGTCTTCCAAGTCTTATCAAACCTCGACAATAACAGTAGTTATGCCGTAGATAAAATAGTTTTATCGTACTCCGATCACCTTGGTAGAAAATCTCCCCTGCttattttttttgttcagtagTTTTAGTCCACCTTTTGATGTTTTAAGGTCAATATGGTCCCCTCTAAGTACTCCATGTCTTGTTTTATTTCTCCAATTTTTCACTAGTACTGTGGCTGGACTAAGTTTTGAATGAcctacattttaatatttgaacTCTTTTGTCCATCGTCTTCTGTTATGTAGCTGTTCTGCAGGTCAAGTAATCATGTAGCTCTGATTCCATTGCTAAGATCATGAACATATTTAGTCAGAGTAACTGCTTTTTCCTAACTTGAAATTGGATTCTTCCgatgacctttttttttttttttgtaagaattttttttaaaaatcagacAATTTTATCACCACAACAAGCACAATTAAGCAAATATTAGATGCACAGACGGGCCACTTCAAAAGTTGTACCCAATGTTTCAAGCCATCTTTATTTGCAAATGTGAATGATATTATCACAGCAGTGCTGAATTGGAACCCGGCCCTTAGATCAGAAGTCAGTTGACAATCAGCATGCCACATGCTCTGCAGTAGAAAGTGACACCATACGAGCATACGGATTGATTTGATCAAGGTATGCCACCCTGGGGCTAAATGGCTCGGGCCGACGTGTCCTGCCCAGTCCCCTGAGTGAGAGAATGGGATAAGGCAGATCGGGGCTTACCTCCAGACAGTGTTCCTTCTTGGGAATGCTTATCAATCTATTTGAAAATTTTTAAGATCCCTGTCAATGATTTTTGACTTATTTTGAGTATTAAGTGGTTAAATCCACACCACCTACAGAGTATTTGTTCCACTTGTAGAAATATAATTTGTCCTGACCTGAATTTCTAGTTTTATCATCCCTATTAATGCTAAATACTGAATGTTTTGGGACGATGTTATCCACATCATTGACTTCATATTACAGGTTTGTTTTAACTGCCTATTCTGTCCATTTTGGCTTTCCACCCCTTGTGTTGAATGTAGTAATGAGAGCATTGAGTTTGTGTTCAATGATATATCCAAATGTGTGGTAAAAGAGCAAGGTTGTTTAGTCACAGAATAGAGGCAAAGTATTCCAGTATATTTGTAGCCTATACCATTGAGTTGATGATGGGCAGAGTGCTATTGCTATGTATTGTGATCAAATATTCTCGTATTCAATTTGTGATGTTTTCCCActcaaaaaaaataacaatttaagGAGCAACTGAGTCCTGAGTTGTCTTGTCACTGTAGTAATAGAAACAAGTGAAAGATTACTTGGATATCCTTCTCTCTTCAGAACCATCTCTATTTAGGACAAATGTAAATGGTtgtctgtttttcatttttatttatatttactcAAAAGATTTTCATTTGTAGTCCATTTTTGACCATTTGTCTTTTTTTCAAAGTGTTCCACGTTTGGTGTATCtcaccaacattttttttttttttttatgctctGAAATTTGGGTTTTATATGTATTGTAGTAAACTGTTTTCAACATTCAA

Function

NR:

description
chromobox protein homolog 5-like

GO: NA

KEGG:

id description
K11587 CBX5, HP1A; chromobox protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946915.1 True 3860 mRNA 0.42 6 41637837 41645221

Neighbor

gene id symbol gene type direction distance location
calcoco1a LOC106572538 coding downstream 242169 41385586 ~ 41395668 (-)
LOC110491987 LOC106567064 coding downstream 358840 41262830 ~ 41278997 (-)
mfsd5 mfsd5 coding downstream 384054 41249937 ~ 41253783 (-)
LOC110491989 LOC106567063 coding downstream 389798 41242965 ~ 41248039 (-)
LOC110491986 LOC106567061 coding downstream 397527 41230602 ~ 41240310 (-)
nfe2 LOC106567066 coding upstream 3976 41649197 ~ 41657737 (-)
znf740b LOC106567069 coding upstream 43025 41688246 ~ 41697155 (-)
zgc:174906 LOC106567072 coding upstream 55174 41700395 ~ 41704276 (-)
spryd3 LOC106567075 coding upstream 85971 41729589 ~ 41814584 (-)
LOC110492013 LOC106567078 coding upstream 207406 41852627 ~ 41857489 (-)
G1375479 NA non-coding downstream 27480 41610117 ~ 41610357 (-)
G1375396 hoxc10aa non-coding downstream 143760 41489002 ~ 41494077 (-)
G1375395 NA non-coding downstream 155551 41481877 ~ 41482286 (-)
G1374850 NA non-coding downstream 181226 41456386 ~ 41456611 (-)
G1374790 NA non-coding downstream 237683 41363933 ~ 41400154 (-)
G1375541 NA non-coding upstream 193205 41838426 ~ 41841200 (-)
G1375561 NA non-coding upstream 206815 41852036 ~ 41852546 (-)
G1375576 NA non-coding upstream 219011 41864232 ~ 41952990 (-)
G1375583 LOC107714922 non-coding upstream 240788 41886009 ~ 41887418 (-)
G1374491 LOC106567058 other downstream 608431 41026775 ~ 41029406 (-)
rps26 LOC106567051 other downstream 783248 40852758 ~ 40854671 (-)
G1374237 LOC106567042 other downstream 1112559 40522997 ~ 40525278 (-)
LOC110491948 LOC106567031 other downstream 1553011 40080690 ~ 40119070 (-)
G1373490 LOC100380641 other downstream 1694809 39940222 ~ 39943028 (-)
G1375495 NA other upstream 18527 41663748 ~ 41664049 (-)
LOC110492054 LOC106567113 other upstream 908338 42548642 ~ 42569532 (-)
LOC110492059 LOC106567118 other upstream 1127085 42767849 ~ 42773348 (-)
LOC110491060 LOC106567122 other upstream 1473667 43117471 ~ 43124619 (-)

Expression


Co-expression Network