zgc:174906 (LOC106567072)


Basic Information

Item Value
gene id zgc:174906
gene name LOC106567072
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 41700395 ~ 41704276 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565949.2
ATTCACTGCAGGCTGCAGGGGTTGCCTTTCATCAGCAGGATCCTGACATTTTAAAAGTTAAGGTGGattttgtggcctttatagctatgGTGATAAATGGTACTGCAAAGGTGGCGAGAAGGACCAGGAAGATAGAAATCATTGTGGAAGCAGTGGAGCGGTTGCTGGGGCGGAAAGATTTCTCTGCAAGGGAGTTACATGGAATATTGTCACAAGGCCCTAGAGCCTGAGAAGGGAGATATGGAGAATTGAAGGAAGAAGTAGGAGTTTTGTTTTGCTAATGTACTATTTTTTATTTGGGTGGATTAAGTTAGTTTCCCTATCACGTATGGGTTTTCCTTTTACCTTGTTTTGGTTTCAACCCGTCCAGTTGGTGGCGACAATAGACCCTTTTGGGTTGTAGCCCGCCATCAAACCCACAGAAGAAGAGGCTTCTGGTGTGTTCAAACGTTTCTGGTCCAGCGATAGAAGGGGATAGCTAGCTGATCATGGCTGAAGAAGAACCCCTAGGTGGCGCCCAGCAGGTACTGCGTCGTCTGAAGCCCAAGTTGATCGATACTCTAAGTGCAGACCCTGCCTTTGTGCTGCAGCATGCAGACTCCCTCAGCCTACTGGCCCGGCATGAGTACAAGCAGGTCAAAGCCCTCACTGACCCATCAAAACAGGCCCAGGACCTTCTGGACCATGTGATCAACAAAGGACCCACTGCTGCAGAGCAGCTTCTGCAGCTCCTGACGGGCAAAGAAATGCAGGATACGTTTCCCAACCTTCTGTTCCTCAAGGAACTGCCAGTGAATGATCAAAAAGCTGCAGGTGAAAAAGGTACAGgggGAAATGAAGTTACCAGAAAGAGAGGACAAACATTTGAGTCCGAAGAGAACCTTCCTGCTAAACAGACCTGCAAGGATGGCTCTAAGATGGTGGTGGAGAAGGATCTGATGCATGTGGCTCGAAATATCGGTCGCTCCTGGAGGGCAATTGGTACAGGGGCCCTAGACATCCCCTCTGTCAAGCTGGATCAGATCCAGGAGGACTATCCACACAGCCATGTGGACCGTGTGTTCGCCATGCTGCGCTACTGGAGCACACTGAAACGGCAGGAGGCCACGGCGGCCAATCTCCACTCCCTACTCAGCCAGGGCGACTGGGCCCTGCCGCCAGACAGCATAGACTTTCTCCTGGGCCCCATCTTAGACCCGTAGCAGTCTGACCTTACTACTAACCCTTAGCTACTATTGCATAATTTCCACTGCAGGGATTTACCACAGTGCTTGGCCTCAGACTTTAGTGTTTCCATGGTTGAGGTTTAGTGGGAAGAGGTTGTAACCGGTGGGATGTAAAACCCAGGTCTTCTGCATGGTAACTCAACGTCTTTACCATTATGCCAGGAGGAAATCCTCATGGTCAGACTGGGTgacaatttgtcttacttttatttttttatatttttttaccagATCAGCTttaaaaatatagatattttatacatttgttttCCATCATCTTTTGTTTTGTTGCTTATTtctttgtaaaaaatatatatacactaccgttcaaaagtttgtggttactcagaaatgtccttgtttttgaaagaaaagcattttttttctttcatttgtccagaaatacagtgtagacattgttaaggttgtaaattactattgtagctggaaacggccgATTTCTTTATGGAGTATCTACATGGGCGTACAGacgcccattatcagcaaccatcactcctgtggtccaatggcacgttgtgttagctaatccaagtttataattttaaaaggctaattgatcattagaaaacccttttgcaattatgttagcactgctgtaaactgttgttctgattaaagaagcaataaaactgtcttttatactagttgagtatctggagcatcagtttaatacttttttgctgattccatgtgttatttcatagttttggtgtcttcactattactctacaatgttaaaataaagaaaaaaccttgaatgagtaggtgtggccaaa
>XM_036946917.1
AAGAGTCCATGGTGGTAGATAGGCATTCACTGCAGGCTGCAGGGGTTGCCTTTCATCAGCAGGATCCTGACATTTTAAAAGTTAAGGTGGattttgtggcctttatagctatgGTGATAAATGGTACTGCAAAGGTGGCGAGAAGGACCAGGAAGATAGAAATCATTGTGGAAGCAGTGGAGCGGTTGCTGGGGCGGAAAGATTTCTCTGCAAGGGAGTTACATGGAATATTGTCACAAGGCCCTAGAGCCTGAGAAGGGAGATATGGAGAATTGAAGGAAGAAGTAGGAGTTTTGTTTTGCTAATGTACTATTTTTTATTTGGGTGGATTAAGTTAGTTTCCCTATCACGTATGGGTTTTCCTTTTACCTTGTTTTGGTTTCAACCCGTCCAGTTGGTGGCGACAATAGACCCTTTTGGGTTGTAGCCCGCCATCAAACCCACAGAAGAAGAGGCTTCTGGTGTGTTCAAACGTTTCTGGTCCAGCGATAGAAGGGGATAGCTAGCTGATCATGGCTGAAGAAGAACCCCTAGGTGGCGCCCAGCAGGTACTGCGTCGTCTGAAGCCCAAGTTGATCGATACTCTAAGTGCAGACCCTGCCTTTGTGCTGCAGCATGCAGACTCCCTCAGCCTACTGGCCCGGCATGAGTACAAGCAGGTCAAAGCCCTCACTGACCCATCAAAACAGGCCCAGGACCTTCTGGACCATGTGATCAACAAAGGACCCACTGCTGCAGAGCAGCTTCTGCAGCTCCTGACGGGCAAAGAAATGCAGGATACGTTTCCCAACCTTCTGTTCCTCAAGGAACTGCCAGTGAATGATCAAAAAGCTGCAGGTGAAAAAGgggGAAATGAAGTTACCAGAAAGAGAGGACAAACATTTGAGTCCGAAGAGAACCTTCCTGCTAAACAGACCTGCAAGGATGGCTCTAAGATGGTGGTGGAGAAGGATCTGATGCATGTGGCTCGAAATATCGGTCGCTCCTGGAGGGCAATTGGTACAGGGGCCCTAGACATCCCCTCTGTCAAGCTGGATCAGATCCAGGAGGACTATCCACACAGCCATGTGGACCGTGTGTTCGCCATGCTGCGCTACTGGAGCACACTGAAACGGCAGGAGGCCACGGCGGCCAATCTCCACTCCCTACTCAGCCAGGGCGACTGGGCCCTGCCGCCAGACAGCATAGACTTTCTCCTGGGCCCCATCTTAGACCCGTAGCAGTCTGACCTTACTACTAACCCTTAGCTACTATTGCATAATTTCCACTGCAGGGATTTACCACAGTGCTTGGCCTCAGACTTTAGTGTTTCCATGGTTGAGGTTTAGTGGGAAGAGGTTGTAACCGGTGGGATGTAAAACCCAGGTCTTCTGCATGGTAACTCAACGTCTTTACCATTATGCCAGGAGGAAATCCTCATGGTCAGACTGGGTgacaatttgtcttacttttatttttttatatttttttaccagATCAGCTttaaaaatatagatattttatacatttgttttCCATCATCTTTTGTTTTGTTGCTTATTtctttgtaaaaaatatatatacactaccgttcaaaagtttgtggttactcagaaatgtccttgtttttgaaagaaaagcattttttttctttcatttgtccagaaatacagtgtagacattgttaaggttgtaaattactattgtagctggaaacggccgATTTCTTTATGGAGTATCTACATGGGCGTACAGacgcccattatcagcaaccatcactcctgtggtccaatggcacgttgtgttagctaatccaagtttataattttaaaaggctaattgatcattagaaaacccttttgcaattatgttagcactgctgtaaactgttgttctgattaaagaagcaataaaactgtcttttatactagttgagtatctggagcatcagtttaatacttttttgctgattccatgtgttatttcatagttttggtgtcttcactattactctacaatgttaaaataaagaaaaaaccttgaatgagtaggtgtggccaaa

Function

NR:

description
uncharacterized protein LOC110492006

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565949.2 False 2023 mRNA 0.44 4 41700395 41704252
XM_036946917.1 True 2041 mRNA 0.44 4 41700395 41704276

Neighbor

gene id symbol gene type direction distance location
znf740b LOC106567069 coding downstream 3240 41688246 ~ 41697155 (-)
nfe2 LOC106567066 coding downstream 42658 41649197 ~ 41657737 (-)
cbx5 LOC106567067 coding downstream 55174 41637837 ~ 41645221 (-)
calcoco1a LOC106572538 coding downstream 304727 41385586 ~ 41395668 (-)
LOC110491987 LOC106567064 coding downstream 421398 41262830 ~ 41278997 (-)
spryd3 LOC106567075 coding upstream 26916 41729589 ~ 41814584 (-)
LOC110492013 LOC106567078 coding upstream 148351 41852627 ~ 41857489 (-)
LOC110492014 LOC106567079 coding upstream 158110 41862386 ~ 41879805 (-)
LOC110492019 LOC106567084 coding upstream 257663 41961939 ~ 42014000 (-)
LOC100301771 parp3 coding upstream 310115 42014391 ~ 42017835 (-)
G1375479 NA non-coding downstream 90038 41610117 ~ 41610357 (-)
G1375396 hoxc10aa non-coding downstream 206318 41489002 ~ 41494077 (-)
G1375395 NA non-coding downstream 218109 41481877 ~ 41482286 (-)
G1374850 NA non-coding downstream 243784 41456386 ~ 41456611 (-)
G1374790 NA non-coding downstream 300241 41363933 ~ 41400154 (-)
G1375541 NA non-coding upstream 134150 41838426 ~ 41841200 (-)
G1375561 NA non-coding upstream 147760 41852036 ~ 41852546 (-)
G1375576 NA non-coding upstream 159956 41864232 ~ 41952990 (-)
G1375583 LOC107714922 non-coding upstream 181733 41886009 ~ 41887418 (-)
G1375495 NA other downstream 36346 41663748 ~ 41664049 (-)
G1374491 LOC106567058 other downstream 670989 41026775 ~ 41029406 (-)
rps26 LOC106567051 other downstream 845806 40852758 ~ 40854671 (-)
G1374237 LOC106567042 other downstream 1175117 40522997 ~ 40525278 (-)
LOC110491948 LOC106567031 other downstream 1615569 40080690 ~ 40119070 (-)
LOC110492054 LOC106567113 other upstream 849283 42548642 ~ 42569532 (-)
LOC110492059 LOC106567118 other upstream 1068030 42767849 ~ 42773348 (-)
LOC110491060 LOC106567122 other upstream 1414612 43117471 ~ 43124619 (-)
G1376748 NA other upstream 1455236 43159512 ~ 43170042 (-)

Expression


Co-expression Network