LOC110492016 (LOC106567081)


Basic Information

Item Value
gene id LOC110492016
gene name LOC106567081
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 41906947 ~ 41915037 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946922.1
aaagagatgctCAGGCGTCATCATGTATATTTCCCGGGAGTGTAGTGCATGTGGCACTGTGACTGCACACGTCACTAGGCGAGATCGCACCTTGGACAGCGACAGCGTCGTCTGTCAATACAACAGCCGAACGGAATCTGCCCTCCCCATCCCTAACTACAGGGCTCCAGAGAGGGTGCATCCATATCATACAGAGGAGACAGACTAATGACCGTAGAGAAGAACATGATAAAAGTATACCAATGTCATGCAGTTTTTCATTCTTGTAGGCTAGTATTCATTCCGGAAGTTGGTGCTGCGTTGGTTCACTATCAAAGTCGACCATTTCGAGGAGGAATCAGGCAGCGCGAGCAAGCAGTAggctatcatcatcatcaccatctgagaggctAGGCTACAATATCAATGGCATTAGGCTACTGCTGTAATTGCCCTCTCGGATGTGTAGACATCTCCATCGGTCTGTAAATTAGAAGATTGCAGCAACTGTTGTTTTGAATTCTGGTCTGTTATTCTCAAATTTCGGTGCACCATATTTTCAACGCAAAGATTGAAGACACCGAAGAGAAATGCTGATGGCTATCGAATGAAGGTGGGATGTATCGCTGTTTTGAGTGGATATATTTACAGATATATTTAACATGCAAATTCACTGGATTGCAAATTGGATCCACTCTGTGTGGACGTCGGGTGGAAtgaggtggaccattcttgatggaTCAATCCAAAACATTACAGAGGTGGAATAGGAAAAAAAACATGATCTGATGGCTGGGATGCTACTAAGGATCATTAAAAACACGATATAATCACACGTCTTACATCTAACTTTCATTATATCGTCTGTCCGCACCCTTTTGGATTATGCTTCTTGACAACAGTCCCAGATATGACTGTGGGGTTGGTCAtggaatgtttatttttattttttacatctcGTTCTATTTTATGTCTCTCCGTTGTTCACTCTTCCACTAGTCCACGCTGGCATGTCTTCTGCTTTGTGTagcaaacatatatattttttgctgcaAACCCCTAATGCAAGGTATTTGATGATGTGTATAATTTAGATCGATAGTGCAGGCAATGGACGATATAGGCCTATCACGTATTTGTGGTGGTAGGGGTGGAGGAAGAATCTAGCTTGACAGCATTCGCAGAGTTGTTTTCGTAATGAATATTGAGAGAGTGTATCGAGCTTCTCAAGAGGGAAATTTCTCATCTGCATTGTCTTAGACACACATGCCATCAGACAACAACCAAGACGTGGTCATTTATTTCTTACCATTTGACAGAACATTTACAATAGGGTGAGCCTACAAGTTTTGTAAGCTCATCAGTGATACTATTCAGAAAATGTTTAGGTAAAATCCCCTAAATAATAGCATATGCAGCACAATAATTGGCTAAAGATAATAggtgtataataataataattataaccCTTCTCCTAAATCAaaggtatatttaattttttCTTGAGACCACCTTATTTTTAAATTGGTTTCATTCCCTTCTGAATAATTAATGTAGCCAAACATGTTCAAATATAGGATCCGCATGTTTTTCAACGAACTGAAAGTACTGGTTTTTATGCGAGACGATTCGAGACAGCCTGAACGAGCCGAAGCAGAGAGACGGTCCAGCATGCGGGGTCTTGGGATGGGCGGCTGCGGCTGGCCTCCCTTTGTGGACTGCTCCTCCCGGGATGACGAGGAGGAGTATTACGGGACGGATCCTCGGCCTCGGAGCCTGGGCTTTGAGGAGAAGGACCCCAAACTGCAAGTGGGCCTGGATGCCGTGTCGCTCACCAGCACTGCAAGCAGCCTGCGCTGTCGTATCTGCTTTCAGGGTCCGGAGCAGggAGAGCTGCTGAGCCCATGTCGCTGTAAGGGTTCTGTGCGCTGCACCCACCAGCCCTGCCTCATCCGCTGGATCAGCGAGAGAGGCTCCTGGAGCTGTGAGCTTTGCTACTTCAAGTACCATGTCCTGGCCATCAGCACCAAGAACCCACTGCAGTGGCAGGCCATCTCCCTGACGGTGATCGAGAAGGTCCAGATCGCTGCCATCATCCTGGGCTCCCTGTTCCTCATCGCCAGCATCTCCTGGCTCGTCTGGTCGTCCCTCAGCCCCTCGGCCAAGTGGCAGCGCCAGGACCtgctcttccagatctgctacgGCATGTACGGCTTCATGGACATCGTGTGCATCGggCTTATAATCCACGAGGGCTCATCAGTATACCGAATATTCAAGCGATGGCAGGCTGTCAATCAACAATGGAAAGTATTGAACTATATAAAAGCCAATGACTTGGGGGACCCGTTGAGTAGCAGTAAGGGTGGGGGTCGGGGCTCACGGAGTAACCCCCATGGCTTGGGTAGTGGCGGCAGCAGGAGACAGAGTCGGAGGTTCAGGACTATTCTGGACCACCACTGTGGCTACACCATCCTTCATATTCTGAGCCAGCTACGGCCACACAACCCACGTATCGGCTCCTCGGCCAACCGGGAGGTGGTGATGAGGGTGACAACGGTATGAAACTGAGCGTGGAAGGGGTGGAATGAAGGAATAAAGCAGGGTATTGTtttttttcgggggggggggggggggggggggggtctggtcaGTTCTTTCAAGATTTTGACAACTCCATTGAGGAACTCGATTTCAGTACCCAGCCCAAGGAAGGATACGTACAGACAAGACAATGTCTGGACCTGCAGCCAAGGTACTATGATATTGTAACAACCCTTGCCTTGGTAGGCTCATTACGATCCCTGCCCAGTAGGTTAATCCTACTGGAGCAGTTATTATGAGTTTGTCTATGGGCTGGGAGACCTGGGTTCGAGACAATGTGTTGGATGTTTGGAAACGTCCTGAAACAGCAACAGACCGCACATATGAGGATCTTTACAGGAGTTTGTTTAAAAAAAGCGATGCACATGATTTGTAATAATCGAATGGTTATTGTAAACTATGGAAAACATGCAAACTATCCAACATGCTTTATAACAACCCAATCCAAGGATATTTTTCAGTCCGATTTCAGGATGCACAaggaaatacatgtattttatttttttctggtatggtttcttttttttgtcattttgatATTTATACGGGGTGTATGATTTAAGGAGATACCTGAAACTCCTTATGGCACGCCAAGCATTTTCAAACAactctaaataataataataataataataataataatagttccGCAGTTCTGAAATATTGCTGTAGCTAATGATGATTAAGCTACAGACTGGAGAACAAAGAATACTACATCATATTACATCATACATCAAAGCCATCATATGAAAACCGACGTTCATTACTGCAAACAATACAGGGATCAAGGGATCATCTACAAAAGGAGAACAATGCATTTATTAAGATGACTCCTAGTCCTATCTTCTCTGCAATAAAGACATCTGTACATTTCACAGTGAATTTTGCATGGGTATATCATTTTTTTAATGCCGCATAATTACCACATAACATTTAAGCACTTCTACAAATTTGCTCTATTCAGAAAGGTGCTTGTCAAAAGAAACACTTTTTATTCAGCTGGTTTTAATTGCACCAAAccgttttttaaaaatctgactgaTGGCAGTGTTATTTCAGCTATAACAGAGATGACCGACTTGCTGCTGTGTGCTGATGATTCAGATTTGATAACAAGCAAACAAACCATTGGATTAAAGATGGAGATCTGAGGATCCCTTATTATTCACTGTCTCA

Function

NR:

description
E3 ubiquitin-protein ligase MARCH9-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946922.1 True 3759 mRNA 0.44 4 41906947 41915037
Loading

Neighbor

gene id symbol gene type direction distance location
tspan31 LOC106567080 coding upstream 8406 41886011 ~ 41898541 (+)
gpr182 LOC106567077 coding upstream 56725 41845991 ~ 41850222 (+)
pip4k2ca LOC106567076 coding upstream 68728 41824048 ~ 41838219 (+)
igfbp6b igfbp-6b2 coding upstream 86367 41743735 ~ 41820580 (+)
lima1a LOC106567074 coding upstream 178750 41714511 ~ 41728197 (+)
LOC110492017 LOC106567082 coding downstream 11169 41926206 ~ 41936644 (+)
LOC110492020 LOC106567083 coding downstream 23374 41938411 ~ 41952996 (+)
LOC110492021 LOC106567086 coding downstream 38167 41953204 ~ 41961861 (+)
LOC118939537 NA coding downstream 153023 42068060 ~ 42072174 (+)
LOC118939475 NA coding downstream 157288 42072325 ~ 42078626 (+)
G1375037 NA non-coding upstream 54094 41851863 ~ 41852853 (+)
G1375035 NA non-coding upstream 62994 41843653 ~ 41843953 (+)
G1374994 NA non-coding upstream 195789 41710877 ~ 41711158 (+)
G1374966 NA non-coding upstream 240982 41665711 ~ 41665965 (+)
G1375087 NA non-coding downstream 65301 41980338 ~ 41980624 (+)
G1375088 NA non-coding downstream 66181 41981218 ~ 41981449 (+)
G1375089 NA non-coding downstream 66981 41982018 ~ 41982237 (+)
G1374558 LOC106567063 other upstream 658991 41244857 ~ 41247956 (+)
LOC110491970 LOC106567050 other upstream 1063462 40836057 ~ 40844169 (+)
tac3a tac3 other upstream 1469819 40431869 ~ 40437128 (+)
znf385a LOC106567037 other upstream 1543612 40265875 ~ 40377336 (+)
G1372542 NA other upstream 1712596 40193812 ~ 40194351 (+)
G1375085 LOC106567084 other downstream 62487 41977524 ~ 41979064 (+)
G1375104 kansl2 other downstream 99463 42014500 ~ 42019534 (+)
G1375141 tuba2 other downstream 194587 42109624 ~ 42123709 (+)
LOC110492034 LOC106567099 other downstream 338995 42253795 ~ 42273351 (+)
G1376241 LOC106567118 other downstream 852749 42767786 ~ 42768745 (+)

Expression

LOC110492016(LOC106567081) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
End of interactive chart.

LOC110492016(LOC106567081) Expression in each Bioproject

Bar chart with 17 bars.
LOC110492016(LOC106567081) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Co-expression Network