Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110492020 |
| gene name | LOC106567083 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048580.1 |
| NCBI id | CM023234.2 |
| chromosome length | 78541548 |
| location | 41938411 ~ 41952996 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021565974.2 | False | 3291 | mRNA | 0.40 | 7 | 41938411 | 41952996 |
| TU1570870 | True | 2574 | lncRNA | 0.38 | 3 | 41947374 | 41952968 |
41,936,000
41,938,000
41,940,000
41,942,000
41,944,000
41,946,000
41,948,000
41,950,000
41,952,000
41,954,000
41,956,000
41,958,000
41,960,000
41,962,000
41,964,000
41,966,000
41,968,000
NC_048580.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110492017 | LOC106567082 | coding | upstream | 1767 | 41926206 ~ 41936644 (+) |
| LOC110492016 | LOC106567081 | coding | upstream | 23374 | 41906947 ~ 41915037 (+) |
| tspan31 | LOC106567080 | coding | upstream | 39870 | 41886011 ~ 41898541 (+) |
| gpr182 | LOC106567077 | coding | upstream | 88189 | 41845991 ~ 41850222 (+) |
| pip4k2ca | LOC106567076 | coding | upstream | 100192 | 41824048 ~ 41838219 (+) |
| LOC110492021 | LOC106567086 | coding | downstream | 208 | 41953204 ~ 41961861 (+) |
| LOC118939537 | NA | coding | downstream | 115064 | 42068060 ~ 42072174 (+) |
| LOC118939475 | NA | coding | downstream | 119329 | 42072325 ~ 42078626 (+) |
| pmelb | LOC106567089 | coding | downstream | 126242 | 42079238 ~ 42085056 (+) |
| LOC110491058 | LOC105016959 | coding | downstream | 147474 | 42100470 ~ 42112185 (+) |
| G1375037 | NA | non-coding | upstream | 85558 | 41851863 ~ 41852853 (+) |
| G1375035 | NA | non-coding | upstream | 94458 | 41843653 ~ 41843953 (+) |
| G1374994 | NA | non-coding | upstream | 227253 | 41710877 ~ 41711158 (+) |
| G1374966 | NA | non-coding | upstream | 272446 | 41665711 ~ 41665965 (+) |
| G1375087 | NA | non-coding | downstream | 27342 | 41980338 ~ 41980624 (+) |
| G1375088 | NA | non-coding | downstream | 28222 | 41981218 ~ 41981449 (+) |
| G1375089 | NA | non-coding | downstream | 29022 | 41982018 ~ 41982237 (+) |
| G1375094 | NA | non-coding | downstream | 43953 | 41996949 ~ 41997220 (+) |
| G1374558 | LOC106567063 | other | upstream | 690455 | 41244857 ~ 41247956 (+) |
| LOC110491970 | LOC106567050 | other | upstream | 1094926 | 40836057 ~ 40844169 (+) |
| tac3a | tac3 | other | upstream | 1501283 | 40431869 ~ 40437128 (+) |
| znf385a | LOC106567037 | other | upstream | 1575076 | 40265875 ~ 40377336 (+) |
| G1372542 | NA | other | upstream | 1744060 | 40193812 ~ 40194351 (+) |
| G1375085 | LOC106567084 | other | downstream | 24528 | 41977524 ~ 41979064 (+) |
| G1375104 | kansl2 | other | downstream | 61504 | 42014500 ~ 42019534 (+) |
| G1375141 | tuba2 | other | downstream | 156628 | 42109624 ~ 42123709 (+) |
| LOC110492034 | LOC106567099 | other | downstream | 301036 | 42253795 ~ 42273351 (+) |
| G1376241 | LOC106567118 | other | downstream | 814790 | 42767786 ~ 42768745 (+) |
