LOC100301771 (parp3)


Basic Information

Item Value
gene id LOC100301771
gene name parp3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 42014391 ~ 42017835 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001160600.2
AGGACCTGGATGTAGTGGGGTGTCCTCCGTCCCCTCTGATGTTTGACACGGCCCTGGCTCTGGAGGACCAGACTATCAGGGCCATCGCTGAGGGTCCTATGGACATCCTGACTGGGGTCGAGCTGGATGCTTCGGGACACGATGACTCTGCTGACATGGAGCTCTCTGAGAGAGTTCTGCAGTCTATAGAGGACCAAATTGTATCAGAGGTAATAGGAGGAGGGGACACCACGGAAAATTCATCTACAGAACTGGACCATGTTGCTGCAGACACCTCCAGATGAGAGCTTTGCCTCCAGACTTGTGTTGAATTCCAGAGACTAATGTTGAGTTGACCAATTCAAAGCCAGGATGGATCTTCAAGGTGGTAGATCATAACAAAGCCTTTGCACACCATTGCCAAATGACTACTGTTAAGTCATTGTTTAATCAGTTGTCATATTACTAACTTTTGCTGATACTCTCTGAGTCGGTTCAATGTCTGTCTGGTCTTGTGCACCGTTGCCTTTCTCAACTTTACCTGTGTAATTTAATAAATCCTGGTTTCTCCTTAAACTACAAACATATGTATATCTTGTATACAAAGTCAGTGTTGGTGTAGTGAAGAGATGAAACACCACTTGTAACTCTGGTTTGTTACTGTTCAATAAACACTCCACAAATGC

Function

symbol description
parp3 Predicted to enable NAD+ ADP-ribosyltransferase activity and protein ADP-ribosylase activity. Acts upstream of or within ectodermal placode development and regulation of neural crest formation. Predicted to be located in nucleus. Predicted to be active in nucleolus and site of double-strand break. Is expressed in axis and notochord. Orthologous to human PARP3 (poly(ADP-ribose) polymerase family member 3).

NR:

description
poly [ADP-ribose] polymerase 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001160600.2 True 665 mRNA 0.45 2 42014391 42017835

Neighbor

gene id symbol gene type direction distance location
LOC110492019 LOC106567084 coding downstream 391 41961939 ~ 42014000 (-)
LOC110492014 LOC106567079 coding downstream 134586 41862386 ~ 41879805 (-)
LOC110492013 LOC106567078 coding downstream 156902 41852627 ~ 41857489 (-)
spryd3 LOC106567075 coding downstream 199807 41729589 ~ 41814584 (-)
zgc:174906 LOC106567072 coding downstream 310115 41700395 ~ 41704276 (-)
LOC118939612 NA coding upstream 2391 42020226 ~ 42020361 (-)
LOC110492022 ccnt1 coding upstream 28314 42046149 ~ 42054227 (-)
LOC110492023 LOC106567088 coding upstream 42158 42059993 ~ 42064731 (-)
LOC110492025 LOC105013598 coding upstream 67226 42085061 ~ 42088234 (-)
LOC110492027 LOC106567093 coding upstream 107831 42125666 ~ 42139058 (-)
G1375639 NA non-coding downstream 4608 42009541 ~ 42009783 (-)
G1375632 NA non-coding downstream 15070 41999093 ~ 41999321 (-)
G1375631 NA non-coding downstream 16313 41997850 ~ 41998078 (-)
G1375630 NA non-coding downstream 17175 41996925 ~ 41997216 (-)
G1375627 NA non-coding downstream 29783 41984381 ~ 41984608 (-)
G1375664 NA non-coding upstream 57845 42075680 ~ 42075954 (-)
G1375665 NA non-coding upstream 58375 42076210 ~ 42076427 (-)
LOC118939538 NA non-coding upstream 80282 42098117 ~ 42230765 (-)
G1375674 tuba2 non-coding upstream 91637 42109472 ~ 42123715 (-)
G1375731 NA non-coding upstream 167894 42185729 ~ 42185955 (-)
G1375495 NA other downstream 350342 41663748 ~ 41664049 (-)
G1374491 LOC106567058 other downstream 984985 41026775 ~ 41029406 (-)
rps26 LOC106567051 other downstream 1159802 40852758 ~ 40854671 (-)
G1374237 LOC106567042 other downstream 1489113 40522997 ~ 40525278 (-)
LOC110492054 LOC106567113 other upstream 535724 42548642 ~ 42569532 (-)
LOC110492059 LOC106567118 other upstream 754471 42767849 ~ 42773348 (-)
LOC110491060 LOC106567122 other upstream 1101053 43117471 ~ 43124619 (-)
G1376748 NA other upstream 1141677 43159512 ~ 43170042 (-)
LOC110492063 LOC106567124 other upstream 1199974 43217803 ~ 43243705 (-)

Expression


Co-expression Network