LOC110492022 (ccnt1)


Basic Information

Item Value
gene id LOC110492022
gene name ccnt1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 42046149 ~ 42054227 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565977.2
CATAATTGACGTCACTTCCTGTTATCCACAATTTTAAAAATATTGTCCTTCTCAGTAATGGCGGCTTCCTTCCCTTCTCCTTCtgcaataaacaacaacaaatggtACTTCACCCGAGAACAGATCGAGAATAGCCCTTCTCGCCGTGCGGGGCTTGATCCAGACAAAGAATTGTCCTACAGACAACAAGCTGCGAACCTTCTACAGGACATGGGACAACGACTCAATGTGTCCCAGCTAACAATTAATACTGCCATTGTGTATATGCACCGATTCTACATGATCCAGTCGTTCACCAGGTTCCACAGAAATGTCATAGCTCCAGCAACACTATTCCTGGCTGCAAAGGTTGAGGAGCAGCCCCGCAAGTTGGAGCATGTTATCAAGGTGACCCATGCATGCCTCAACCCTCAGGACCCTTCACCAGATGTCCGCAGTGATGCTTACCTGCAACAAGCCCAAGACCTGGTCATTCTTGAGAGCATTATACTCCAGACCCTGGCCTTTGAAATCACCATTGACCACCCACATACTCATGTTGTCAAGTGCACCCAGCTAGTCAGAGTTGTTCCAGCGAGTAAGGATTTGGCCCAGACGTCatacttcatggctaccaacagTCTACACCTGACCACATTCTGCCTTCAACACAGCCCGCCCATCGTGGCCTGCGTTTGCATCCACCTGGCCTGCAAGTGGTCCAACTGGGAGATCCCAGTCTCTACAGACAGCAAGCACTGGTGGGAGTATGTGGACAATACTGTCACCCTCGAGCTGCTGGATGAGCTCACCCACGAGTTCCTGCAGATCTTGGAGAAGACACCAAGCCGATTAAAACGCATTCGCAACTGGAAAGCGGCAGGTCAGACAGTGAAGGGAGGGAAGTCCAAGGTGCCAGAAGACGGCGATCAGACAGATGGCATGATGAGCATGGTCTCCATGTCGTCGTCTGAGACCACGCTGGGTGGCCTGATGAgcctctccaaccctctctcttcatcttcctcctccatgGCTCCCATACTACTGGAGCTCAAGTCGACCCTTGGCAGTGGTTCTGACCAGCCCAGCCACGTCGAGCTGCATGCCCCGGCCAAGGTGTCACTGAGCGAGTACCGGGCCAAGCACGCTGACGTCCTGGCTGCTCAGAAGAGGAAGCTGGAGAACATGGAGGCCAGCGTGAAGAGGGAGTACGCCACGGCAGCCCAGGCTCTGATAGGCCAGCAGCAGAGGAAGGAGAAGCACCACCGTGACCAGCAGCAATCCAGCTCCCACCATTCCAGCTCGGCCTCCTCTGACCTCAGCAGCCCCTCGCCCATCATCCTCAAGATCCCCCTGGAAAAGGAGAGGGGCGAGCGCAGCTCCCTGAAGATGCGCCTCCCTCTGGGGTCTGGGGGAGGCGGGGGGCATAGTGGAGGAGGGaacagaggagcaggaggagaaaaGGACATCAAAGTGAGAATTCGGGTGCCTGAGAAAGTACGCAGTGGAGGctcgggagaggaggggggcaagACTAGGGAGGGAAAGCACCGAGAACGTTccaaccaccaccatcatcatcatcaccaccaccatcattcatCGTCATCTTTTAGCGGTGCTTCTGTCTCTTCGTCCTCGTCACATAAACACTCAGCCAGTGCTGCTGGAGCTGTAGGAGGAAGCAGCAGCAAAAAAGCCCCCAGTGACTCGTCTAGAATGAGCTCCTCTTCCTCTGTGTCTCGAAAGAGGACACATTCCACGGAGTCCCAGGGCTCCCACTCGTCCAAAGTCTCTAAGTCCTCCAGGAACTCAGCTCACCAGCTGCCTGCTCTTTTAGCTGCCTCTGGAGCACATTCCCTGGGGGCACACCCCACTGatatcctcccctccctccaccagGGCAACTACTCTCACTCCAAGGGGGACAAGCTGGACACTAACGGACACAATGCAGGTGTTGGCAGCCAGTCGAATGAGTATCAGGACACGTTTGAAATGCTGAACTCTTTACTGAGTGCTCAGGGGGTGCAGCCTGTCCAGCCTCCCATGTTTGATTGCCGGTCTCAGTATGTGGAGTACAGATACAGCGGCGGGTCTAGGGGGGGATCTCGACCACCACCTCTGCCTGCTGAACCTCCACCTCCGCTACCCCCTCTACCCAAGTGATCCCTGATGAAGGGGTGAATTACTGACAGTGTACCTGTAGACTCATCCAACCATGTTACATAAGATATTTGCTCTGTGAATTTTGTCCCTTTTATGTGTTTGTATGGATCATGTTGTGGTTTTCAACTTGACAGCAAAGAAATGTACCAATACATACTTTTCAGTGATGTAGGTGCTGAAGTGTGTCCCTCGTCACATCATATTCAATACATCTGTGGGGCAATAACAGGAGGTGTGAAAGAAATGCTTGCAAAAAATTTGAAACGAACAAAATTAATTATTTATTCACAATGTAAATACTTTATCATGATATGAcctcaaatcagattttatggaATGGCGGGCATAATATTTGAGCCATAGCTATTTTTAAAAGAAAGTCAAACGTTACATGTTTGAATGCCTATTAGAGGAAACAAACTTGTTTGCTTCACTTACTACATTTTAAAGTCTTGCTAACAATGAGTCTTTTCCATAATGTTTTTGAAATATACTATTTATTATTAGTATTGAATGCTTTTGAggaagtttaaaaatatataaataactgCCCCTTTCCGCTGTGTTAAACTGAAGGATAGTTGAGTGCTCCTTACACAGGCCTATTTCAGAATGCATGTCTTCAAAGCCAtcgttttcaacattttgtttgtTTCAAAATACTGTAGTAACTGAGGTTTTTGTCTCCGTTTTGTCAATACATTTGTTTTGTAATCTCTA
>XM_021565978.2
ACATAATTGACGTCACTTCCTGTTATCCACAATTTTAAAAATATTGTCCTTCTCAGTAATGGCGGCTTCCTTCCCTTCTCCTTCtgcaataaacaacaacaaatggtACTTCACCCGAGAACAGATCGAGAATAGCCCTTCTCGCCGTGCGGGGCTTGATCCAGACAAAGAATTGTCCTACAGACAACAAGCTGCGAACCTTCTACAGGACATGGGACAACGACTCAATGTGTCCCAGCTAACAATTAATACTGCCATTGTGTATATGCACCGATTCTACATGATCCAGTCGTTCACCAGGTTCCACAGAAATGTCATAGCTCCAGCAACACTATTCCTGGCTGCAAAGGTTGAGGAGCAGCCCCGCAAGTTGGAGCATGTTATCAAGGTGACCCATGCATGCCTCAACCCTCAGGACCCTTCACCAGATGTCCGCAGTGATGCTTACCTGCAACAAGCCCAAGACCTGGTCATTCTTGAGAGCATTATACTCCAGACCCTGGCCTTTGAAATCACCATTGACCACCCACATACTCATGTTGTCAAGTGCACCCAGCTAGTCAGAGCGAGTAAGGATTTGGCCCAGACGTCatacttcatggctaccaacagTCTACACCTGACCACATTCTGCCTTCAACACAGCCCGCCCATCGTGGCCTGCGTTTGCATCCACCTGGCCTGCAAGTGGTCCAACTGGGAGATCCCAGTCTCTACAGACAGCAAGCACTGGTGGGAGTATGTGGACAATACTGTCACCCTCGAGCTGCTGGATGAGCTCACCCACGAGTTCCTGCAGATCTTGGAGAAGACACCAAGCCGATTAAAACGCATTCGCAACTGGAAAGCGGCAGGTCAGACAGTGAAGGGAGGGAAGTCCAAGGTGCCAGAAGACGGCGATCAGACAGATGGCATGATGAGCATGGTCTCCATGTCGTCGTCTGAGACCACGCTGGGTGGCCTGATGAgcctctccaaccctctctcttcatcttcctcctccatgGCTCCCATACTACTGGAGCTCAAGTCGACCCTTGGCAGTGGTTCTGACCAGCCCAGCCACGTCGAGCTGCATGCCCCGGCCAAGGTGTCACTGAGCGAGTACCGGGCCAAGCACGCTGACGTCCTGGCTGCTCAGAAGAGGAAGCTGGAGAACATGGAGGCCAGCGTGAAGAGGGAGTACGCCACGGCAGCCCAGGCTCTGATAGGCCAGCAGCAGAGGAAGGAGAAGCACCACCGTGACCAGCAGCAATCCAGCTCCCACCATTCCAGCTCGGCCTCCTCTGACCTCAGCAGCCCCTCGCCCATCATCCTCAAGATCCCCCTGGAAAAGGAGAGGGGCGAGCGCAGCTCCCTGAAGATGCGCCTCCCTCTGGGGTCTGGGGGAGGCGGGGGGCATAGTGGAGGAGGGaacagaggagcaggaggagaaaaGGACATCAAAGTGAGAATTCGGGTGCCTGAGAAAGTACGCAGTGGAGGctcgggagaggaggggggcaagACTAGGGAGGGAAAGCACCGAGAACGTTccaaccaccaccatcatcatcatcaccaccaccatcattcatCGTCATCTTTTAGCGGTGCTTCTGTCTCTTCGTCCTCGTCACATAAACACTCAGCCAGTGCTGCTGGAGCTGTAGGAGGAAGCAGCAGCAAAAAAGCCCCCAGTGACTCGTCTAGAATGAGCTCCTCTTCCTCTGTGTCTCGAAAGAGGACACATTCCACGGAGTCCCAGGGCTCCCACTCGTCCAAAGTCTCTAAGTCCTCCAGGAACTCAGCTCACCAGCTGCCTGCTCTTTTAGCTGCCTCTGGAGCACATTCCCTGGGGGCACACCCCACTGatatcctcccctccctccaccagGGCAACTACTCTCACTCCAAGGGGGACAAGCTGGACACTAACGGACACAATGCAGGTGTTGGCAGCCAGTCGAATGAGTATCAGGACACGTTTGAAATGCTGAACTCTTTACTGAGTGCTCAGGGGGTGCAGCCTGTCCAGCCTCCCATGTTTGATTGCCGGTCTCAGTATGTGGAGTACAGATACAGCGGCGGGTCTAGGGGGGGATCTCGACCACCACCTCTGCCTGCTGAACCTCCACCTCCGCTACCCCCTCTACCCAAGTGATCCCTGATGAAGGGGTGAATTACTGACAGTGTACCTGTAGACTCATCCAACCATGTTACATAAGATATTTGCTCTGTGAATTTTGTCCCTTTTATGTGTTTGTATGGATCATGTTGTGGTTTTCAACTTGACAGCAAAGAAATGTACCAATACATACTTTTCAGTGATGTAGGTGCTGAAGTGTGTCCCTCGTCACATCATATTCAATACATCTGTGGGGCAATAACAGGAGGTGTGAAAGAAATGCTTGCAAAAAATTTGAAACGAACAAAATTAATTATTTATTCACAATGTAAATACTTTATCATGATATGAcctcaaatcagattttatggaATGGCGGGCATAATATTTGAGCCATAGCTATTTTTAAAAGAAAGTCAAACGTTACATGTTTGAATGCCTATTAGAGGAAACAAACTTGTTTGCTTCACTTACTACATTTTAAAGTCTTGCTAACAATGAGTCTTTTCCATAATGTTTTTGAAATATACTATTTATTATTAGTATTGAATGCTTTTGAggaagtttaaaaatatataaataactgCCCCTTTCCGCTGTGTTAAACTGAAGGATAGTTGAGTGCTCCTTACACAGGCCTATTTCAGAATGCATGTCTTCAAAGCCAtcgttttcaacattttgtttgtTTCAAAATACTGTAGTAACTGAGGTTTTTGTCTCCGTTTTGTCAATACATTTGTTTTGTAATCTCTA

Function

symbol description
ccnt1 Predicted to enable cyclin-dependent protein serine/threonine kinase activator activity. Predicted to be involved in positive regulation of DNA-templated transcription, elongation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be part of cyclin/CDK positive transcription elongation factor complex. Predicted to be active in nucleus. Orthologous to human CCNT1 (cyclin T1).

NR:

description
cyclin-T1-like isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
K15188 CCNT; cyclin T

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565977.2 False 2871 mRNA 0.49 9 42046149 42054226
XM_021565978.2 True 2863 mRNA 0.49 9 42046149 42054227

Neighbor

gene id symbol gene type direction distance location
LOC118939612 NA coding downstream 25788 42020226 ~ 42020361 (-)
LOC100301771 parp3 coding downstream 28314 42014391 ~ 42017835 (-)
LOC110492019 LOC106567084 coding downstream 32149 41961939 ~ 42014000 (-)
LOC110492014 LOC106567079 coding downstream 166344 41862386 ~ 41879805 (-)
LOC110492013 LOC106567078 coding downstream 188660 41852627 ~ 41857489 (-)
LOC110492023 LOC106567088 coding upstream 5766 42059993 ~ 42064731 (-)
LOC110492025 LOC105013598 coding upstream 30834 42085061 ~ 42088234 (-)
LOC110492027 LOC106567093 coding upstream 71439 42125666 ~ 42139058 (-)
LOC110492028 jph2 coding upstream 95118 42149345 ~ 42150283 (-)
LOC110492030 LOC106567094 coding upstream 119783 42174010 ~ 42176473 (-)
G1375639 NA non-coding downstream 36366 42009541 ~ 42009783 (-)
G1375632 NA non-coding downstream 46828 41999093 ~ 41999321 (-)
G1375631 NA non-coding downstream 48071 41997850 ~ 41998078 (-)
G1375630 NA non-coding downstream 48933 41996925 ~ 41997216 (-)
G1375627 NA non-coding downstream 61541 41984381 ~ 41984608 (-)
G1375664 NA non-coding upstream 21453 42075680 ~ 42075954 (-)
G1375665 NA non-coding upstream 21983 42076210 ~ 42076427 (-)
LOC118939538 NA non-coding upstream 43890 42098117 ~ 42230765 (-)
G1375674 tuba2 non-coding upstream 55245 42109472 ~ 42123715 (-)
G1375731 NA non-coding upstream 131502 42185729 ~ 42185955 (-)
G1375495 NA other downstream 382100 41663748 ~ 41664049 (-)
G1374491 LOC106567058 other downstream 1016743 41026775 ~ 41029406 (-)
rps26 LOC106567051 other downstream 1191560 40852758 ~ 40854671 (-)
G1374237 LOC106567042 other downstream 1520871 40522997 ~ 40525278 (-)
LOC110492054 LOC106567113 other upstream 499332 42548642 ~ 42569532 (-)
LOC110492059 LOC106567118 other upstream 718079 42767849 ~ 42773348 (-)
LOC110491060 LOC106567122 other upstream 1064661 43117471 ~ 43124619 (-)
G1376748 NA other upstream 1105285 43159512 ~ 43170042 (-)
LOC110492063 LOC106567124 other upstream 1163582 43217803 ~ 43243705 (-)

Expression


Co-expression Network