LOC110492023 (LOC106567088)


Basic Information

Item Value
gene id LOC110492023
gene name LOC106567088
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 42059993 ~ 42064731 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946924.1
CATGCTCGACTGTGAATGAATGAAATTCTTGCTGAGCTGAAGCATGAGTGTGAAGCCAGGGGTCTGGGTGCGAAGGGCAACAAATTGGAGCTGATCACACGACTACAGGCTCATCTGGAGGAGCATGagGATGACATGGGCCTAAATGAAGATGATGTTCTGGGAGAAGAGCCAGAGTACCTCTCGAAAGATGCGGATGCCGTCACTGGGGATAACGACGAGAAACCAGTAGCGGTGTCTGAGGCGGCTGAAAAGAAAGTGGTAAAAATCACACCTCCAGTATCTGTGGATGAGAGGTTACAGAAGAGAGCAGACCGATTCAATGTCCCTGCCTTAGCTGACAGCAAGAAGGCCATACGTGCTGCCCGGTTTGGTTTGCCCGTTGCTGCACCTCCAACTTCCACCACAGGTGTAACTGTGAATAAATCCACTCCAGTCAGCGTTGAACAGCTAAAAAAGCGAGCTGAACGATTTGGCGGGAACGTTTCTTCCGTCTCCAAGAAGGTTGAGGAAGATGAGAAGCTGAAGAAGCGGAAAGAAAGATTTGGGATCCTCACTGGTGCTGTCGCAACTGATATTGAGGCAAAGAAACAGAAGCGTTCTGAACGATTTGGAAATGTGACGGTGTAATTTGGTATTTTTAAGTGATGTTTTATgctctttttttttgtgtgtgtatgttgcaaACATAActgaaatgtactgtatatagcttgtCAAGTTGTATTACATTTGGTCATTAAAGTAGTTTTCAATTATT
>XM_021565979.2
CATTAATTAGCACAGCAGATTGCTGTGGGTGTCGATTTCCGATTGGAGAAATAGATTCAGCAAAGCAAGATGGCTGAAATTGGGGAGCTCCAGAAACTAAAGCTTGCTGAGCTGAAGCATGAGTGTGAAGCCAGGGGTCTGGGTGCGAAGGGCAACAAATTGGAGCTGATCACACGACTACAGGCTCATCTGGAGGAGCATGagGATGACATGGGCCTAAATGAAGATGATGTTCTGGGAGAAGAGCCAGAGTACCTCTCGAAAGATGCGGATGCCGTCACTGGGGATAACGACGAGAAACCAGTAGCGGTGTCTGAGGCGGCTGAAAAGAAAGTGGTAAAAATCACACCTCCAGTATCTGTGGATGAGAGGTTACAGAAGAGAGCAGACCGATTCAATGTCCCTGCCTTAGCTGACAGCAAGAAGGCCATACGTGCTGCCCGGTTTGGTTTGCCCGTTGCTGCACCTCCAACTTCCACCACAGGTGTAACTGTGAATAAATCCACTCCAGTCAGCGTTGAACAGCTAAAAAAGCGAGCTGAACGATTTGGCGGGAACGTTTCTTCCGTCTCCAAGAAGGTTGAGGAAGATGAGAAGCTGAAGAAGCGGAAAGAAAGATTTGGGATCCTCACTGGTGCTGTCGCAACTGATATTGAGGCAAAGAAACAGAAGCGTTCTGAACGATTTGGAAATGTGACGGTGTAATTTGGTATTTTTAAGTGATGTTTTATgctctttttttttgtgtgtgtatgttgcaaACATAActgaaatgtactgtatatagcttgtCAAGTTGTATTACATTTGGTCATTAAAGTAGTTTTCAATTATT
>XR_002468937.2
CATTAATTAGCACAGCAGATTGCTGTGGGTGTCGATTTCCGATTGGAGAAATAGATTCAGCAAAGCAAGATGGCTGAAATTGGGGAGCTCCAGAAACTAAAGCTTGCTGAGCTGAAGCATGAGTGTGAAGCCAGGGGTCTGGGTGCGAAGGGCAACAAATTGGAGCTGATCACACGACTACAGGCTCATCTGGAGGAGCATGagGATGACATGGGCCTAAATGAAGATGATGTTCTGGGAGAAGAGCCAGAGTACCTCTCGAAAGATGCGGATGCCGTCACTGGGGATAACGACGAGAAACCAGTAGCGGTGTCTGAGGCGGCTGAAAAGAAAGTGGTAAAAATCACACCTCCAGTATCTGTGGATGAGAGGTTACAGAAGAGAGCAGACCGATTCAATGTCCCTGCCTTAGCTGACAGCAAGAAGGCCATACGTGCTGCCCGGTTTGGTTTGCCCGTTGCTGCACCTCCAACTTCCACCACAGGTGTAACTGTGAATAAATCCACTGCAACCAGTCAGCGTTGAACAGCTAAAAAAGCGAGCTGAACGATTTGGCGGGAACGTTTCTTCCGTCTCCAAGAAGGTTGAGGAAGATGAGAAGCTGAAGAAGCGGAAAGAAAGATTTGGGATCCTCACTGGTGCTGTCGCAACTGATATTGAGGCAAAGAAACAGAAGCGTTCTGAACGATTTGGAAATGTGACGGTGTAATTTGGTATTTTTAAGTGATGTTTTATgctctttttttttgtgtgtgtatgttgcaaACATAActgaaatgtactgtatatagcttgtCAAGTTGTATTACATTTGGTCATTAAAGTAGTTTTCAATTATT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946924.1 False 760 mRNA 0.45 11 42059993 42064177
XM_021565979.2 False 835 mRNA 0.45 11 42059993 42064731
XR_002468937.2 True 839 mRNA 0.45 11 42059993 42064731

Neighbor

gene id symbol gene type direction distance location
LOC110492022 ccnt1 coding downstream 5766 42046149 ~ 42054227 (-)
LOC118939612 NA coding downstream 39632 42020226 ~ 42020361 (-)
LOC100301771 parp3 coding downstream 42158 42014391 ~ 42017835 (-)
LOC110492019 LOC106567084 coding downstream 45993 41961939 ~ 42014000 (-)
LOC110492014 LOC106567079 coding downstream 180188 41862386 ~ 41879805 (-)
LOC110492025 LOC105013598 coding upstream 20330 42085061 ~ 42088234 (-)
LOC110492027 LOC106567093 coding upstream 60935 42125666 ~ 42139058 (-)
LOC110492028 jph2 coding upstream 84614 42149345 ~ 42150283 (-)
LOC110492030 LOC106567094 coding upstream 109279 42174010 ~ 42176473 (-)
LOC118939538 NA coding upstream 116640 42098117 ~ 42230765 (-)
G1375639 NA non-coding downstream 50210 42009541 ~ 42009783 (-)
G1375632 NA non-coding downstream 60672 41999093 ~ 41999321 (-)
G1375631 NA non-coding downstream 61915 41997850 ~ 41998078 (-)
G1375630 NA non-coding downstream 62777 41996925 ~ 41997216 (-)
G1375627 NA non-coding downstream 75385 41984381 ~ 41984608 (-)
G1375664 NA non-coding upstream 10949 42075680 ~ 42075954 (-)
G1375665 NA non-coding upstream 11479 42076210 ~ 42076427 (-)
G1375674 tuba2 non-coding upstream 44741 42109472 ~ 42123715 (-)
G1375731 NA non-coding upstream 120998 42185729 ~ 42185955 (-)
LOC110492013 LOC106567078 other downstream 204632 41852627 ~ 41857489 (-)
G1375495 NA other downstream 395944 41663748 ~ 41664049 (-)
G1374491 LOC106567058 other downstream 1030587 41026775 ~ 41029406 (-)
rps26 LOC106567051 other downstream 1205404 40852758 ~ 40854671 (-)
G1374237 LOC106567042 other downstream 1534715 40522997 ~ 40525278 (-)
LOC110492054 LOC106567113 other upstream 488828 42548642 ~ 42569532 (-)
LOC110492059 LOC106567118 other upstream 707575 42767849 ~ 42773348 (-)
LOC110491060 LOC106567122 other upstream 1054157 43117471 ~ 43124619 (-)
G1376748 NA other upstream 1094781 43159512 ~ 43170042 (-)
LOC110492063 LOC106567124 other upstream 1153078 43217803 ~ 43243705 (-)

Expression


Co-expression Network