LOC110492025 (LOC105013598)


Basic Information

Item Value
gene id LOC110492025
gene name LOC105013598
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 42085061 ~ 42088234 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565982.2
AAATCTGGAAGCGCCGCCCCTCTACATCAGCAGTTGTTGCGTCGACCCTGACGGACAGAGAATACACTTATTCATTCAGACACAAATAGGGATCTCTCTGCGTATTGCTTTGTGTTTTCCCTTATTGTTCGATCCTCCTTAGAAAACATGcgtgAGTGTATCTCTGTCCATGTGGGTCAGGCTGGAGTCCAGATTGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAACATGGGATCCAGCCTGACGGACAGATGCCCAGTGACAAGACCATCGGAGGAGGAGACGACTCCTTCAACACCTTCTTTAGTGAGACTGGGGCTGGAAAGCATGTCCCCAGGGCTGTGTTTGTAGACCTGGAGCCCACAGTCATAGATGAGGTGCGCACTGGGACCTACCGCCAGTTATTCCATCCTGAACAGCTCATCACTGGCAAAGAGGATGCTGCCAACAACTACGCCCGTGGACACTACACTATTGGCAAAGAGATCATTGACCTGGTGTTGGACAGGATCCGCAAACTGgcTGACCAGTGTACAGGCCTTCAGGGCTTCCTGGTTTTCCACAGCTTTGGAGGTGGCACCGGCTCTGGTTTCACCTCTCTGCTGATGGAGCGCCTGTCTGTTGACTACGGCAAGAAGTCCAAGCTGGAGTTCTCCATCTATCCAGCTCCCCAGGTGTCCACAGCTGTGGTGGAACCTTACAACTCCATCCTGACCACCCACACCACCCTAGAGCACTCTGACTGTGCTTTCATGGTggataatgaggctatatatGACATCTGTCGTAGGAACCTCGACATTGATCGTCCCACCTACACCAACCTCAACAGGCTCATTAGCCAGATTGTTTCCTCCATTACTGCTTCCCTTCGATTCGATGGTGCCCTCAATGTTGATCTGACAGAATTCCAGACCAACTTGGTGCCCTATCCACGTATTCATTTTCCTCTGGCTACCTATGCCCCAGTCATCTCTGCAGAGAAGGCTTACCATgagcagctctctgtctctgagatCACCAATGCCTGCTTTGAGCCGGCCAATCAGATGGTGAAATGTGACCCTCGCCACGGCAAGTATATGGCTTGTTGCCTTCTGTTCCGTGGTGATGTGGTGCCCAAAGATGTCAATGCTGCTATTGCCACCATCAAGACCAAACGTTCTATTCAGTTTGTTGACTGGTGCCCAACTGGTTTCAAGGTTGGCATCAACTATCAGCCTCCCACTGTAGTCCCTGGTGGAGACCTGGCCAAAGTCCAGAGGGCTGTGTGCATGCTGAGCAACACCACTGCTGTGGCAGAGGCCTGGGCTCGTCTTGACCACAAGTTTGACCTGATGTACGCCAAACGTGCCTTTGTGCACTGGTATGTGGGTGAGGGCATGGAGGAGGGAGAGTTCTCTGAAGCCAGAGAGGACATGGCAGCCCTGGAGAAGGATTACGAGGAGGTAGGGGTCGACTCcattgagggggagggagaggaggagggagaggagtatTGAAATGTCCCTGCAGGCAAGACATTGTCGAACATTGTTACTGTTGCATGATCTGATTATGATACCtaataaaatatttaattaaATTA

Function

NR:

description
tubulin alpha chain

GO: NA

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565982.2 True 1589 mRNA 0.51 4 42085061 42088234

Neighbor

gene id symbol gene type direction distance location
LOC110492023 LOC106567088 coding downstream 20330 42059993 ~ 42064731 (-)
LOC110492022 ccnt1 coding downstream 30834 42046149 ~ 42054227 (-)
LOC118939612 NA coding downstream 64700 42020226 ~ 42020361 (-)
LOC100301771 parp3 coding downstream 67226 42014391 ~ 42017835 (-)
LOC110492019 LOC106567084 coding downstream 71061 41961939 ~ 42014000 (-)
LOC110492027 LOC106567093 coding upstream 37432 42125666 ~ 42139058 (-)
LOC110492028 jph2 coding upstream 61111 42149345 ~ 42150283 (-)
LOC110492030 LOC106567094 coding upstream 85776 42174010 ~ 42176473 (-)
LOC118939538 NA coding upstream 93137 42098117 ~ 42230765 (-)
LOC100136795 LOC106567100 coding upstream 188486 42276720 ~ 42311179 (-)
G1375665 NA non-coding downstream 8634 42076210 ~ 42076427 (-)
G1375664 NA non-coding downstream 9107 42075680 ~ 42075954 (-)
G1375639 NA non-coding downstream 75278 42009541 ~ 42009783 (-)
G1375632 NA non-coding downstream 85740 41999093 ~ 41999321 (-)
G1375631 NA non-coding downstream 86983 41997850 ~ 41998078 (-)
G1375674 tuba2 non-coding upstream 21238 42109472 ~ 42123715 (-)
G1375731 NA non-coding upstream 97495 42185729 ~ 42185955 (-)
G1375827 NA non-coding upstream 280293 42368527 ~ 42368847 (-)
G1375828 NA non-coding upstream 282027 42370261 ~ 42370596 (-)
LOC110492013 LOC106567078 other downstream 229700 41852627 ~ 41857489 (-)
G1375495 NA other downstream 421012 41663748 ~ 41664049 (-)
G1374491 LOC106567058 other downstream 1055655 41026775 ~ 41029406 (-)
rps26 LOC106567051 other downstream 1230472 40852758 ~ 40854671 (-)
G1374237 LOC106567042 other downstream 1559783 40522997 ~ 40525278 (-)
LOC110492054 LOC106567113 other upstream 465325 42548642 ~ 42569532 (-)
LOC110492059 LOC106567118 other upstream 684072 42767849 ~ 42773348 (-)
LOC110491060 LOC106567122 other upstream 1030654 43117471 ~ 43124619 (-)
G1376748 NA other upstream 1071278 43159512 ~ 43170042 (-)
LOC110492063 LOC106567124 other upstream 1129575 43217803 ~ 43243705 (-)

Expression


Co-expression Network