LOC110492045 (LOC106567106)


Basic Information

Item Value
gene id LOC110492045
gene name LOC106567106
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 42387236 ~ 42398873 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566014.2
TCCACAGCGTTCCACGGTTAGGGCCATTTTTGGTAGTTCTCGCCGGTGACAGTGTGTGGACCAGATTCCACTTATCAATTAAAActgtttataaataaataaatacaaacttAAAACGGCATACACTTGCCCAAAAGAAACGGAGATAAATTGCGTTCGTTCTTCCACTGGGTTTCTTTTCCTGTCAATTTCCCTGAAATTTCACAAGGCAAAAGAGGGCGAGACAGGAGAGACGGTGATACAACATGGATGAGGAATATGACGTGATCGTTTTGGGAACCGGACTCACAGAATGCATCCTCTCTGGGATCATGTCTGTGAATGGAAAGAAAGTGCTGCACATGGACAGGAACCCCTACTATGGAGGTGAAAGCTCCTCCATCACCCCCCTGGAAGAGCTGTACAAGCGCTTTGAGCTGCCTGACAGCCCTCCAGAGTCTATGGGTCGTGGAAGAGACTGGAATGTGGACCTCATCCCCAAATTTCTAATGGCCAATGGTCAGCTTGTGAAGATGCTGCTATACACCGAGGTGACAAGATACCTGGACTTCAAAGTAGTGGAGGGTAGTTTTGTGTACAAGGGAGGAAAAATCTACAAAGTGCCCTCAACTGAGACTGAGGCACTAGCTTCAAATCTTATGGGTATGTTTGAGAAGAGAAGGTTCCGGAAATTCTTAGTGTTTGTGGCTAACTTTGACGAGAACGACCCTAAGACCTTCGAGGGCGTCGACCCCAAAGTCACCACCATGAAAGATGTGTACAAGAAGTTTGACCTTGGTCAGGATGTCATCGACTTCACTGGCCACGCCCTGGCCCTCTACAGGACAGACGACTACCTTGATGTGCCCTGTTTGGAGACCATCAACCGCATCAAGCTGTACAGTGAATCCCTGGCCCGATATGGGAAGAGCCCCTACCTGTACCCCCTCTATGGCCTCGGGGAGCTGCCTCAAGGATTCGCCAGGTTAAGTGCAATTTATGGAGGAACCTACATGCTCAACAAACCAGTGGAGGAGATAGTAATGGAGGATGGCCATGTGGTGGGAGTGAAGTCTGAGGGAGAGGTGGCTCGGTGCAAACAGCTGATCTGTGACCCCAGCTACATCCAGGACCGAGTGCGTAAGGCAGGTCAGGTGATCAGGGTCATCTGTATCCTCAGCCACCCCATCAAGAACACCAACGACGCCAACTCCTGTCAGATCATCATCCCTCAGAACCAGGTCAACCGCAAGTCAGACATCTACGTGTGTATGATCTCCTACGCCCACAACGTGGCGGCCCAGGGAAAGTACATCGCCATCGTCAGCACCACCGTGGAGACCAGTGAACCTGAGACTGAGATAGAACCTGCTCTGGAGCTGCTGGAGCCCATTGACCAGAAGTTTGTGTCCCTCAGTGACCTCTATGAGCCCACAGATGACGGTACTGAGAGCCAGATATTCGCCTCGTCAGCCTACGACGCCACCACTCACTTCGAGACCACCTGCAACGACATCAAGGACATCTACAAGCGTATGACAGGCAGCGACTTTGACTTTGAGAACATGAAGCGCAAACAGAACGATGTGTTTGGGGAGGATGAGCAATGAGGAGGGAGGAGTATCAGGGAAAGGGAGAggcggagagaggaggggtttttAAATAGAAAAGAGGCCATATCATAGAGGGTAGGACGGTACAAAGATAGGGCTAGGGTACTGTAGGGGTAGTGTATTAAGCTGGGTACTGTATTTGGGAGATAGTGGGGGAGTCTGAATAAGTGAAGGTTCTAGGTAGTGGGTGGTGATGGATCTAGGGAGTTCTAGGAGGTTCTAGGTTCCGTGTGTGTGGCTCTGACTCCTTTTGCTCATGTCTTTCCCTTTCCTGAGGTCTCCGTACTCAAACACATTtgaaacactcacacacatcgTTCCAAGACTCACATTCCCTATATCTATCACTGAAATGCAGGGTTGATATGGTCTTTCATTCCATTTTTGATTATCTATAAACTACatgtctaaactattatcatTAGAGGTAGACTGATTCATTGTTGTGGAAATTTCAAAGTATTTTTCTCATATCAAGGTCAATGACATTGCAAGAATGTCTGAATTATGATGTAAAATGAATGAATGACTAACTGTAGAAAATTTGAAGTGGAAACTGTTTTTGAAAAGACAGTTTGGTCATAAATAGTGATTTGCCTCTGCTCTGAATGTGTCACCTCTAATCGACATGCATGCATATTTTACACATAGTAGGATTGTACATAGAACATGATGACACAGCAGCGTTCTGAAGGCTGGGCCATTCTCACACTGATCATTCCATCCTGTCAACCCTGCTTTCACTCTCGTCTAACTTACTGGTCTGTTACCCATTTTACTTATTTACATAGATTGCTCCTTTTTCAGCAAATATCTCTCTCGGTcagacaaaatgtttaaaaatgaaaAGTTATTGATATATCAATGGGCTGTTCTGTCAAACTGATAGTGCTCACTTTGCAGTGCTGTTGTGTTCCCTGCGCTAGCAGACAAGCGAACCGGTGGCGAACTGTTCTGTTGTCCCTAAAACCACGTTTTGTTTCTCTTGTCTGTTGTGTGATGTCCAAGATACGGTTTTGAACGGTTTACGTTTGCATTTACACCATTATGAGTTTTATTTCGTAATATTTGGTGCACATTTTCACTTGCTGAAGTTATGAAGTTTACTGAATTTGAAACGGAAACATGGACGGATACTCCGAAGTGGACTTTGAGGTCAAACACTGAAAAAAGGTCAATTGTGGTGCAGAAAAGCGAGAGAGATTTAACTGTGAGGGTCTGTCCGGAGGTTAGGCATGTTGGTGAGGTTTTATGAGTAAGTATGGAAGAGTTTGTCATGGAATGAAAGCGTTTTAATCAAAAAAGGGAGGTCCGATCCGATCACGACACGTTGAGATGCGAGGAAGGTGATAAGAACCAATGTAGCTCGGGAATGTCGCAGACTTGAGATCAGGAAAGTGTCACTTTTGTGTTAAAGACGGCAGACTGAACTCTCGGCTTGTCGTGAAAGGAAGCACCAGATCATGTTATGATCAAACTAACCCTTGTTGTGTCACACAGAGAGACTAATTCCCTTTGAACTCCTGCCAGGTAACCTTACAGTAGCTAGTGGAGGGAAAAACTGACACTCCCAAAATGTTAAACACTTAACAGGATGCAGTATTACAAAACGTCCTGAGGCCATGGTATAAAGTGCCTCCCCAGAGTATGAACCAATATGCTTTTACTTGGTTTTAGCCTTAATTTGGGGTCTTATTCAATATGTTCGGGTTCTCTAAAAATGCGATCATTTCATTCTATTTAGAAACAATGTAATCTGCCGATTATTCCTGTCCTTCGAGCGATAATTGATGTCAGTTGATTGACTTGATGCAGCAAATGTCCTGTGTATTTCATGACTGCTAACTGTGCACATTGTATTTCCACTAACTACTacccacacattattacattgacTGGAATTCTAAAGATTCTATCTCTATCTATTCACATGGTCTAATAACTCCAGTGGTTCTGTGGACTTGGCTGTGCTCCTATGTCAGTCTCCCCCCATTGTAGCTTCCCTTAACCGCCATTCTGTCTGATCCTTTGGAGTTAGCGGTGTTTTTCTTCATCTATGTTTCCATGTGTGACATTGTTTTGAGGTGTGGATCAGCGGCGTGGTTACttatttacagtacagtacatatcaAATGTTGGGCGGCAAACCTTACCCTTCAAACATGATGACAGTAACACGGTGGAAGCTAGTGTGAACGATTGCCTCTCCCTTCCTGTCGTCCCTCCATAACTATATCTCTAAACGACGCAGTTATCACAAGTTCGGGGTGGCTTTATGTGTCTTATTATTATAAtggtcttttttatttatttcatttcacttATTCAACGTGTTCTTGTGGTGGAAGGTTTAAGTGAAACGCTGACTCTGCTTCTCTGCTATTCATTTGTTATATTATCATAACGGAACTGATCTGAGAGGGATGCATATGTGCAGATGTCATTGTTTTAGCTTTGTTGTCGTTCACTGTGTCACGTTTCACCCGATTTAgtggttattattattagtgttacgTGGGTTAGGCATTATTAACAGGTCTTATAACAGGTTGGGATGGATAACGGTAGGACGATAGCAACAGTCTCTGGCCCTCGATCATAGGGTCCATTTCACGCTTTTAACCTTTCAGACACATGTCTGCAGACTGTGCACAGTTTACACTTTGTGTGAATTTCATTCTGGAATCATGTTATCTTGGTGATTACTGGAATAGTGTTAAGTTTACTCTGCAAGCTTATCTAGTTATATTTGAACCTTTTTCCCCTTCCTCACCACCAGATGTTGTCTtctcttgtttttattttatttaaacaaaCGCCTACAATGTGGTTGTACTGTATTAATTTAAGAGTTTTTGCCTTTGACAAATGTTATATCGATGATATCCCTTGACATTGACGAAAACATCGGTCAGTCTGAGTAGCAGACAACTTTACAGTCCTTTGTTTGATCACTAGTATGTGAACAATGCctaataatgtattgtgtaacaaacAAATAAAATGAAACTATGAACGAAATGACAGAAAAACAATAATAAAAGCACATGGCAAAAGCTGAAAA

Function

NR:

description
rab GDP dissociation inhibitor alpha

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0005093 Rab GDP-dissociation inhibitor activity molecular_function

KEGG:

id description
K17255 GDI1_2; Rab GDP dissociation inhibitor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566014.2 True 4656 mRNA 0.43 11 42387236 42398873

Neighbor

gene id symbol gene type direction distance location
LOC110492036 LOC106567102 coding downstream 29662 42331636 ~ 42357574 (-)
LOC100136795 LOC106567100 coding downstream 76057 42276720 ~ 42311179 (-)
LOC118939538 NA coding downstream 156471 42098117 ~ 42230765 (-)
LOC110492030 LOC106567094 coding downstream 210763 42174010 ~ 42176473 (-)
LOC110492028 jph2 coding downstream 236953 42149345 ~ 42150283 (-)
LOC110492048 taf8 coding upstream 10481 42409354 ~ 42415213 (-)
LOC110492049 LOC106572624 coding upstream 16367 42415240 ~ 42416592 (-)
LOC110492050 LOC106567110 coding upstream 21342 42420215 ~ 42430379 (-)
LOC110492051 LOC106567111 coding upstream 46900 42445773 ~ 42468841 (-)
src LOC106567112 coding upstream 76826 42475699 ~ 42526905 (-)
G1375833 NA non-coding downstream 6664 42380249 ~ 42380572 (-)
G1375832 NA non-coding downstream 8305 42378635 ~ 42378931 (-)
G1375831 LOC106567105 non-coding downstream 8706 42378286 ~ 42378530 (-)
G1375828 NA non-coding downstream 16640 42370261 ~ 42370596 (-)
G1375827 NA non-coding downstream 18389 42368527 ~ 42368847 (-)
G1375841 LOC106567107 non-coding upstream 1082 42399955 ~ 42406935 (-)
G1375845 NA non-coding upstream 8165 42407038 ~ 42407894 (-)
G1375853 NA non-coding upstream 34107 42432980 ~ 42433428 (-)
G1375854 NA non-coding upstream 35552 42434425 ~ 42434650 (-)
G1375855 NA non-coding upstream 36373 42435246 ~ 42436720 (-)
LOC110492013 LOC106567078 other downstream 531875 41852627 ~ 41857489 (-)
G1375495 NA other downstream 723187 41663748 ~ 41664049 (-)
G1374491 LOC106567058 other downstream 1357830 41026775 ~ 41029406 (-)
rps26 LOC106567051 other downstream 1532647 40852758 ~ 40854671 (-)
G1374237 LOC106567042 other downstream 1861958 40522997 ~ 40525278 (-)
LOC110492054 LOC106567113 other upstream 154686 42548642 ~ 42569532 (-)
LOC110492059 LOC106567118 other upstream 373433 42767849 ~ 42773348 (-)
LOC110491060 LOC106567122 other upstream 720015 43117471 ~ 43124619 (-)
G1376748 NA other upstream 760639 43159512 ~ 43170042 (-)
LOC110492063 LOC106567124 other upstream 818936 43217803 ~ 43243705 (-)

Expression


Co-expression Network