LOC110492048 (taf8)


Basic Information

Item Value
gene id LOC110492048
gene name taf8
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 42409354 ~ 42415213 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468940.2
CGGAAATGATGCCgttttgtttttctgtctgtcgTGTGCCTAGCAAGCTAGGCGAACACTTTTGTTGTCAGAAAGGTGTGACTTTGTGAAATAACGATTTGGGAGCAAATAAACAACCTACCGTGCAGATGGCGGACCCTGCGGTGATGGCGGGTGGATTCAGTGCTATAGTAGGGCGTTCCGGGTGTGGTAAGGCGACGTCCAGCCCGGCAGAGAATTACCAGCTTGCCCGGCGTCGCACCCTCCAAGTGGTAGTGAGCTCTCTGCTGACAGAGTGTGGATTCGAGAGCGCAGAGAAGGCCACCGTGGAATCACTGACTGAGATGATCCAGagctACATATCTGAAGTAGGTCGTTGTGCCAAGGCATACTGTGAACACACAGCTCGAATCACGCCCACCCTCTCTGACGCTGTGGTCACACTCAATGAAATGGGTTTCAATGTGGACACTCTGCCAGGGTATGCCAAGAGATCACAGAGGATGGTTATAACTGCTCCTCCAGTGACGAATGCTCCTGTGATCCCAAAGGCCTTGATTGCTGGACAGAAACGCACTCATCCCTCCCACATCCCCAGCCACTTCCCGGAGTTCCCCGATCCTCACACTTACATCAAAACTCCAACGTTTCGGGAGCCTGTGTCAGATTATCAGGTGGTGCGAGAGAAGGCAGCTTCTCAGAGAAGAGATGTAGAGCGAGCACTCACACGCTTCATGGccaagacaggagaaacacagagCCTCTTCAAGGATGATGTCACTGCCTTCCCATTGATCGCAGAGCGGCCCAGCTCCATCCCGTACCTCAGTGCCCTGCTGCCCTCAGAACTGGAGCTGCAGACTCTGGAGGAGACTGACTCCTCTGAACAGGACGATCAGACCGACAGCGAGAACACGCCAGTCAACAACCTCAATGATGATCCTGGAGCTGATAAGGAGAATTCCGTGCTTCTTGCTGGGGGCGTGGTTCCCTCGGTGAAGGTCAGTGAAGAAAACATGATTGACAACCCATACTTGAGGCCAGTCAAGAAACCCAAAGTGAGGAGGAAGAAGTGAGAGTTTACTACACTTAGCTACTAATTTGGACTTCTGTCAGCCACAACGAAGAGTGAATTGTAAGAAGCAGTCAACAGCTCTGTGCTTCTGAGAAGTGGACCCACGTGGACATCTGAGGTCAGGGACTCCAACCTCTCAACTTCCTACATGGCAAATACTGCTCATTATGACACCCTTCACCAGTTACATTCATGAGAAAACAGACatttgctaaaatgttatTTTTACCTATTTCCGAATTATGATTTCAGTCGTTTGTGAATAATGAACAGGACataaaatgttttgatttgtaatTTTAACATCAATTTACCCAAATGACACATTTTAGCCTATcgccaaatatacactgaacaaaaaaataaacgcaacatgtaaagtgttggtccattgtttcatgatctgaaataaaacatgtcccagtt
>XM_021566019.2
CGGAAATGATGCCgttttgtttttctgtctgtcgTGTGCCTAGCAAGCTAGGCGAACACTTTTGTTGTCAGAAAGGTGTGACTTTGTGAAATAACGATTTGGGAGCAAATAAACAACCTACCGTGCAGATGGCGGACCCTGCGGTGATGGCGGGTGGATTCAGTGCTATAGTAGGGCGTTCCGGGTGTGGTAAGGCGACGTCCAGCCCGGCAGAGAATTACCAGCTTGCCCGGCGTCGCACCCTCCAAGTGGTAGTGAGCTCTCTGCTGACAGAGTGTGGATTCGAGAGCGCAGAGAAGGCCACCGTGGAATCACTGACTGAGATGATCCAGagctACATATCTGAAGTAGGTCGTTGTGCCAAGGCATACTGTGAACACACAGCTCGAATCACGCCCACCCTCTCTGACGCTGTGGTCACACTCAATGAAATGGGTTTCAATGTGGACACTCTGCCAGGGTATGCCAAGAGATCACAGAGGATGGTTATAACTGCTCCTCCAGTGACGAATGCTCCTGTGATCCCAAAGGCCTTGATTGCTGGACAGAAACGCACTCATCCCTCCCACATCCCCAGCCACTTCCCGGAGTTCCCCGATCCTCACACTTACATCAAAACTCCAACGTTTCGGGAGCCTGTGTCAGATTATCAGGTGGTGCGAGAGAAGGCAGCTTCTCAGAGAAGAGATGTAGAGCGAGCACTCACACGCTTCATGGccaagacaggagaaacacagagCCTCTTCAAGGATGATGTCACTGCCTTCCCATTGATCGCAGAGCGGCCCAGCTCCATCCCGTACCTCAGTGCCCTGCTGCCCTCAGAACTGGAGCTGCAGACTCTGGAGGAGACTGACTCCTCTGAACAGGACGATCAGACCGACAGCGAGAACACGCCAGTCAACAACCTCAATGATGATCCTGGAGCTGATAAGGAGAATTCCGTGCTTCTTGCTGGGGGCGTGGTTCCCTCGGTGAAGGTCAGTGAAGAAAACATGATTGACAACCCATACTTGAGGCCAGTCAAGAAACCCAAAGTGAGGAGGAAGAAGTGAGAGTTTACTACACTTAGCTACTAATTTGGACTTCTGTCAGCCACAACGAAGAGTGAATTGTAAGAAGCAGTCAACAGCTCTGTGCTTCTGAGAAGTGGACCCACGTGGACATCTGAGGTCAGGGACTCCAACCTCTCAACTTCCTACATGGCAAATACTGCTCATTATGACACCCTTCACCAGTTACATTCATGAGAAAACAGACATTTGCTAAATTTAATATTTTtcaaatttgtggaatggttctGTCGTGAAAGAAAATgtaacatttgctaaaatgttatTTTTACCTATTTCCGAATTATGATTTCAGTCGTTTGTGAATAATGAACAGGACataaaatgttttgatttgtaatTTTAACATCAATTTACCCAAATGACACATTTTAGCCTATcgccaaatatacactgaacaaaaaaataaacgcaacatgtaaagtgttggtccattgtttcatgatctgaaa

Function

symbol description
taf8 Predicted to enable protein heterodimerization activity. Predicted to be involved in transcription initiation from RNA polymerase II promoter. Predicted to act upstream of or within cell differentiation. Predicted to be located in cytoplasm and nucleus. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF8 (TATA-box binding protein associated factor 8).

NR:

description
transcription initiation factor TFIID subunit 8-like

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0003743 translation initiation factor activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K14649 TAF8; transcription initiation factor TFIID subunit 8

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468940.2 False 1480 mRNA 0.48 9 42409354 42415213
XM_021566019.2 True 1525 mRNA 0.48 8 42409371 42415213

Neighbor

gene id symbol gene type direction distance location
LOC110492045 LOC106567106 coding downstream 10481 42387236 ~ 42398873 (-)
LOC110492036 LOC106567102 coding downstream 51780 42331636 ~ 42357574 (-)
LOC100136795 LOC106567100 coding downstream 98175 42276720 ~ 42311179 (-)
LOC118939538 NA coding downstream 178589 42098117 ~ 42230765 (-)
LOC110492030 LOC106567094 coding downstream 232881 42174010 ~ 42176473 (-)
LOC110492049 LOC106572624 coding upstream 27 42415240 ~ 42416592 (-)
LOC110492050 LOC106567110 coding upstream 5002 42420215 ~ 42430379 (-)
LOC110492051 LOC106567111 coding upstream 30560 42445773 ~ 42468841 (-)
src LOC106567112 coding upstream 60486 42475699 ~ 42526905 (-)
LOC110492054 LOC106567113 coding upstream 133432 42548642 ~ 42569532 (-)
G1375845 NA non-coding downstream 1460 42407038 ~ 42407894 (-)
G1375841 LOC106567107 non-coding downstream 2419 42399955 ~ 42406935 (-)
G1375833 NA non-coding downstream 28782 42380249 ~ 42380572 (-)
G1375832 NA non-coding downstream 30423 42378635 ~ 42378931 (-)
G1375831 LOC106567105 non-coding downstream 30824 42378286 ~ 42378530 (-)
G1375853 NA non-coding upstream 17767 42432980 ~ 42433428 (-)
G1375854 NA non-coding upstream 19212 42434425 ~ 42434650 (-)
G1375855 NA non-coding upstream 20033 42435246 ~ 42436720 (-)
G1375856 NA non-coding upstream 22647 42437860 ~ 42438207 (-)
G1375859 NA non-coding upstream 24735 42439948 ~ 42441684 (-)
LOC110492013 LOC106567078 other downstream 553993 41852627 ~ 41857489 (-)
G1375495 NA other downstream 745305 41663748 ~ 41664049 (-)
G1374491 LOC106567058 other downstream 1379948 41026775 ~ 41029406 (-)
rps26 LOC106567051 other downstream 1554765 40852758 ~ 40854671 (-)
G1374237 LOC106567042 other downstream 1884076 40522997 ~ 40525278 (-)
LOC110492059 LOC106567118 other upstream 357093 42767849 ~ 42773348 (-)
LOC110491060 LOC106567122 other upstream 703675 43117471 ~ 43124619 (-)
G1376748 NA other upstream 744299 43159512 ~ 43170042 (-)
LOC110492063 LOC106567124 other upstream 802596 43217803 ~ 43243705 (-)

Expression


Co-expression Network