LOC110492049 (LOC106572624)


Basic Information

Item Value
gene id LOC110492049
gene name LOC106572624
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 42415240 ~ 42416592 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566020.2
CTCAACACCCATCGTCATGAATATTCATAATTTGACACTTTGTGGGAGTTGATGTGGATCTCCTTGTGTATAAAACCCAGCACCTCTCATTGCATCTTTGCTTGGGGATGCTTGACTAAGACGAAATCTAAGGAAAGCATTTAACAGGTCCCTATACAGACTGAACTTAAGACAATGGAGACCATAAACGAAATCATTCCATTCGCTAAGGAGATGCTGAGCCAGAGGCCCAGTCGAGGCATGATGAAGGTGTACCTGCTGGGTTCTACCCTGGCATTTTTTGGAGTTGTCGGTGGGCTGGTGGAAACGGTCTGCATGCCATTTTGTGAACAGGAGCCATTAGATGAGGAAATGATCAagctgatcacagaggagaagaagaggcaaATGCTGGAGCCAGAGATAACCACTGTCGAGCCTGATGTTGTGGATGAGTTGCAAACAGAGATTGATGCTAAGAAGCCACTGGAAGGTCGTCAGAGGAGGGCGTCTATCAGGTCACCTGCCTGTTGAAGATGCACTGCAACAACATCTTATGTTACACACACTAATGAAACCAACACTCAGAACACAAAATGTGGTGAAATAAGCTGTCAACCAGGCAATCAAAAGAGATTGCACTTGGTGATTTTTGTCATGATAATTTGGCCATGTTTAgggaccccttgacttattattaatgagaagagaagaggctgaatggatggatggacgaaTGCAACAACAAGCTACAGTGATGACTGGCTGCTGGGCAGCAGAAGCTCTGTGACTGATTGAGAATTTGTATTTTCTTTTGGCTTCCTAATAAACCTATTTTAGGTTACCACTGGGTCATGAACTGGTTAATGTCAAACAGTGCTGTGAGTAGTCTACTGTAGCCTATCTAATTATTTATATAAACCCTAGATGACTGTTTTAAAGCCACTGCACAGGTCTTTTTGTACtccattgtaaaaaatattttggaagctatagaaatgcatttataaatGTGTATATTCGTTTTTGCTAAGTATATTCTATTACATACACATTGATGCATACATTTCAATTGTATTATGTGAACTgaacataaaaacaaaaaaataaagacattaataaaaaca

Function

NR:

description
PREDICTED: G0/G1 switch protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566020.2 True 1106 mRNA 0.40 2 42415240 42416592

Neighbor

gene id symbol gene type direction distance location
LOC110492048 taf8 coding downstream 27 42409354 ~ 42415213 (-)
LOC110492045 LOC106567106 coding downstream 16367 42387236 ~ 42398873 (-)
LOC110492036 LOC106567102 coding downstream 57666 42331636 ~ 42357574 (-)
LOC100136795 LOC106567100 coding downstream 104061 42276720 ~ 42311179 (-)
LOC118939538 NA coding downstream 184475 42098117 ~ 42230765 (-)
LOC110492050 LOC106567110 coding upstream 3623 42420215 ~ 42430379 (-)
LOC110492051 LOC106567111 coding upstream 29181 42445773 ~ 42468841 (-)
src LOC106567112 coding upstream 59107 42475699 ~ 42526905 (-)
LOC110492054 LOC106567113 coding upstream 132053 42548642 ~ 42569532 (-)
LOC110492056 LOC106567114 coding upstream 198815 42615407 ~ 42663808 (-)
G1375845 NA non-coding downstream 7346 42407038 ~ 42407894 (-)
G1375841 LOC106567107 non-coding downstream 8305 42399955 ~ 42406935 (-)
G1375833 NA non-coding downstream 34668 42380249 ~ 42380572 (-)
G1375832 NA non-coding downstream 36309 42378635 ~ 42378931 (-)
G1375831 LOC106567105 non-coding downstream 36710 42378286 ~ 42378530 (-)
G1375853 NA non-coding upstream 16388 42432980 ~ 42433428 (-)
G1375854 NA non-coding upstream 17833 42434425 ~ 42434650 (-)
G1375855 NA non-coding upstream 18654 42435246 ~ 42436720 (-)
G1375856 NA non-coding upstream 21268 42437860 ~ 42438207 (-)
G1375859 NA non-coding upstream 23356 42439948 ~ 42441684 (-)
LOC110492013 LOC106567078 other downstream 559879 41852627 ~ 41857489 (-)
G1375495 NA other downstream 751191 41663748 ~ 41664049 (-)
G1374491 LOC106567058 other downstream 1385834 41026775 ~ 41029406 (-)
rps26 LOC106567051 other downstream 1560651 40852758 ~ 40854671 (-)
G1374237 LOC106567042 other downstream 1889962 40522997 ~ 40525278 (-)
LOC110492059 LOC106567118 other upstream 355714 42767849 ~ 42773348 (-)
LOC110491060 LOC106567122 other upstream 702296 43117471 ~ 43124619 (-)
G1376748 NA other upstream 742920 43159512 ~ 43170042 (-)
LOC110492063 LOC106567124 other upstream 801217 43217803 ~ 43243705 (-)

Expression


Co-expression Network