LOC110492050 (LOC106567110)


Basic Information

Item Value
gene id LOC110492050
gene name LOC106567110
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 42420215 ~ 42430379 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566022.2
gagactgagagggaccAGACAGGGACATAGCTTAATCTTTTATCATAGTTGTTAGTAGCCAGAATTCTAGACATGAGAGGAGTGGAATAGTTATTCAACATTTTGGCTTTAGcatatacttaaaaaaaaaaaaaaatcttatgcTTGTCATGTGGCTACTGTATTACCTGACTGAGTGACAGATTTGACAGATAATTTGTCCGACAGTCTTAACAGGTTCAGAGAAGTTTTCATTTGTCTACTATGGTTTTGTCTATTTGGATATCAATGGAACCGACTTCCGAAGAAGATAGTTGGGAAGGAAATGTGAGAGAAATCCCCTTTAAAGAAGCAGACATGGGTCGTAAAGAAGCCGAATTTGACTGGAAGAAGACCACTGACAACATTCAGGAGGTGTTTGACTTCATGGAGGTTCTTGGCTCGGGCGCGTTCTCCGAGGTGTTCATGgtgaaggagaggaagacaggcaAGCTGTTTGCCATGAAGTGtgtgaagaagaagcagaagagtATTCAGAATCTGGAGAACGAGATTGCCGTGTTGAGAAAGATCAAACACGATAACGTCGTTGGGCTGGAGGATTTTTATGAAAGTCGTTCTCATTACTACCTTGTCATGCAACTCGTTGCTGGGGGTGAGCTGTTTGACCGTATCCTGGACCGGGGGATGTACTCAGAGAAGGATGCTAGCAGGGTCATCCAACAGGTGCTCCAGGCTGTACAATACCTCCATCAGAATGGCATCGTACACCGTGACCTCAAGCCGGAGAACCTGCTGTATTACAGCCAGGATGAGAGCTCCAAGATCATGATCAGTGACTTTGGCCTGTCCAAGATGGAGGACAACGGTGTTATGTCCACAGCCTGCGGCACTCCAGGATATGTGGCCCCTGAAGTCTTGGCCCAGAAACCCTACAGCAAGGCAGTGGACTGCTGGTCTATTGGAGTCATCACCTATATCCTTCTCTGTGGATATCCCCCTTTCTATGAGGACACTGAGACGCGACTGTTCTCGAAGATCATGAAGGCACAGTACGAGTTTGACTCTCCCTTCTGGGATGACATCTCTGAATCAGCCAAAGATTTTATCCGCAACATGATGCAGAAGAACCCGAAGATGCGCTTCACCACAGAGCAGGCTCTCAGGCATCCCTGGATCATTGGAAATACTGCACGGAGCCAGGATATCTACCACTCTGTCAGTGTCCAGATCCAGAAGAACTTTGCCAAGACCAAGTGGAAGCAAGCCTTTAACGCCACCGTGGCCATCAATCACATGAagaagctgcagctggcccactCTGAGCTGGTGGTCAAGGCGCAGACCCTCAACATGCCCACCATCCAGGTTATCGACGTCTCCTCCCCCGCCAATTCCCACAACCCCCCGGATCCCGATAGGCTGGAACCCAAAGGGAACCAAATTACCCTACCAATCAGCTCCAGAGACACGAAGAGCCACCAGCCCTTAAAGATCAGCCAAAGCGAGCCGGCACACGCCCATACCCTCGCAGAGACGGGCAAATACGCCTACCACTCTGAGCCTGCGAACCTTAATACGTACAGGGCAACGGGCAACCGCAATGGCCAAGTTCTCCAGACTGGAGTGTGCTCTGTCATGTGAAGGATCTTTGGAAGGACTTCCACTTTGCGTGGAATTTTTTTACTAGGTCAGTCAGCTGACTTGGTCATGTCTGCTTCCTTCCTGTGGGCCAGTGGATTCTCAGGATGGCCAGTGAGATCCAGAATCCGCCGGGTTTCTGAAAATAATTCTGAACAGTGCCTAGAAACCTCCTTGAAAACATTCTGGACATACTGTACACCGACAGACgttcacacacatacatgtatataACAAGGTATTCCACGATGTCCAGAATCCCAGGGAGGAGGGGCACTATGCTCACTAGGGACTGGGTGATGTATGTATTATACCATGAAGAAACAATTATTCACATAAGAATTTTGTGTTATAACCCTTGAAGAAGGAGTTGATGTCAGGGAAAGGTTTGTTTGCGTCATGATGTGGTGATGCGATGTGGAGCAAAGTTTAAAGTTGAAAGACAGCTAAAGAAGAAATAGGACTACTGTGTACATGACTATAAGACTGACTTAAGTGGTTGTGCTGTTCCATGGTGTGGGGAGATGTTCGAAACAGAAGGCAGGTTTTGATGTGGAATATATGACCAACCAGGATTTTATCCCCATGTACATTGATGGGGGAAGTTGATGGGGAACATTGAGTAACTAAACGATAGTGTTATCCATGTGCTCACAGTCAACTCATTAACAGTGTAAATACCACTCTTAATGATTTGCCAACTCACCAGCACTCATATTAATGAAAGTTGAGATTGTAAATCTAATTTATCCTTGTGCTGAAGAGATTTGGATACTATTATTATGATTTTATTACTGTATTGATAATATTATGTCTCCTTTTAATACAAGGAGGTGAGTTGCTTCTGTCCCAAGCTCAGCGGAGCTTGCTGTTGGTGTTTTGTAAATATTCTAGATTGGGGTTTTTTCTCTGTAGcttcattgtaaataaataaaatacgtACACAAACAA
>XM_021566021.2
CCATCGAGCGGCTTTGAGTGCACAGAAAAAAAACACTGGATGTGAGACGTCCCAGCGAATGTCGGTCTTTAAATACAAAAGAACACTCAGTCCTCTCGCATTTTCCCACGGCGTTTTCTACCAGTGCTGTCCTTGCATTGGCCGGACTGCCTGCATCCCTAAAGGCAAAACTACCTGTGGCTTGAGTTGTTATAAACTTTCAGAAATCCCCTTTAAAGAAGCAGACATGGGTCGTAAAGAAGCCGAATTTGACTGGAAGAAGACCACTGACAACATTCAGGAGGTGTTTGACTTCATGGAGGTTCTTGGCTCGGGCGCGTTCTCCGAGGTGTTCATGgtgaaggagaggaagacaggcaAGCTGTTTGCCATGAAGTGtgtgaagaagaagcagaagagtATTCAGAATCTGGAGAACGAGATTGCCGTGTTGAGAAAGATCAAACACGATAACGTCGTTGGGCTGGAGGATTTTTATGAAAGTCGTTCTCATTACTACCTTGTCATGCAACTCGTTGCTGGGGGTGAGCTGTTTGACCGTATCCTGGACCGGGGGATGTACTCAGAGAAGGATGCTAGCAGGGTCATCCAACAGGTGCTCCAGGCTGTACAATACCTCCATCAGAATGGCATCGTACACCGTGACCTCAAGCCGGAGAACCTGCTGTATTACAGCCAGGATGAGAGCTCCAAGATCATGATCAGTGACTTTGGCCTGTCCAAGATGGAGGACAACGGTGTTATGTCCACAGCCTGCGGCACTCCAGGATATGTGGCCCCTGAAGTCTTGGCCCAGAAACCCTACAGCAAGGCAGTGGACTGCTGGTCTATTGGAGTCATCACCTATATCCTTCTCTGTGGATATCCCCCTTTCTATGAGGACACTGAGACGCGACTGTTCTCGAAGATCATGAAGGCACAGTACGAGTTTGACTCTCCCTTCTGGGATGACATCTCTGAATCAGCCAAAGATTTTATCCGCAACATGATGCAGAAGAACCCGAAGATGCGCTTCACCACAGAGCAGGCTCTCAGGCATCCCTGGATCATTGGAAATACTGCACGGAGCCAGGATATCTACCACTCTGTCAGTGTCCAGATCCAGAAGAACTTTGCCAAGACCAAGTGGAAGCAAGCCTTTAACGCCACCGTGGCCATCAATCACATGAagaagctgcagctggcccactCTGAGCTGGTGGTCAAGGCGCAGACCCTCAACATGCCCACCATCCAGGTTATCGACGTCTCCTCCCCCGCCAATTCCCACAACCCCCCGGATCCCGATAGGCTGGAACCCAAAGGGAACCAAATTACCCTACCAATCAGCTCCAGAGACACGAAGAGCCACCAGCCCTTAAAGATCAGCCAAAGCGAGCCGGCACACGCCCATACCCTCGCAGAGACGGGCAAATACGCCTACCACTCTGAGCCTGCGAACCTTAATACGTACAGGGCAACGGGCAACCGCAATGGCCAAGTTCTCCAGACTGGAGTGTGCTCTGTCATGTGAAGGATCTTTGGAAGGACTTCCACTTTGCGTGGAATTTTTTTACTAGGTCAGTCAGCTGACTTGGTCATGTCTGCTTCCTTCCTGTGGGCCAGTGGATTCTCAGGATGGCCAGTGAGATCCAGAATCCGCCGGGTTTCTGAAAATAATTCTGAACAGTGCCTAGAAACCTCCTTGAAAACATTCTGGACATACTGTACACCGACAGACgttcacacacatacatgtatataACAAGGTATTCCACGATGTCCAGAATCCCAGGGAGGAGGGGCACTATGCTCACTAGGGACTGGGTGATGTATGTATTATACCATGAAGAAACAATTATTCACATAAGAATTTTGTGTTATAACCCTTGAAGAAGGAGTTGATGTCAGGGAAAGGTTTGTTTGCGTCATGATGTGGTGATGCGATGTGGAGCAAAGTTTAAAGTTGAAAGACAGCTAAAGAAGAAATAGGACTACTGTGTACATGACTATAAGACTGACTTAAGTGGTTGTGCTGTTCCATGGTGTGGGGAGATGTTCGAAACAGAAGGCAGGTTTTGATGTGGAATATATGACCAACCAGGATTTTATCCCCATGTACATTGATGGGGGAAGTTGATGGGGAACATTGAGTAACTAAACGATAGTGTTATCCATGTGCTCACAGTCAACTCATTAACAGTGTAAATACCACTCTTAATGATTTGCCAACTCACCAGCACTCATATTAATGAAAGTTGAGATTGTAAATCTAATTTATCCTTGTGCTGAAGAGATTTGGATACTATTATTATGATTTTATTACTGTATTGATAATATTATGTCTCCTTTTAATACAAGGAGGTGAGTTGCTTCTGTCCCAAGCTCAGCGGAGCTTGCTGTTGGTGTTTTGTAAATATTCTAGATTGGGGTTTTTTCTCTGTAGcttcattgtaaataaataaaatacgtACACAAACAA
>XM_021566023.2
ACCGGGCCCCTCCCTCCCCGAACCGTTAACGGGGATGGAACTGCGCGACCTAATCTCTGACCTGAAAAAAAACTAGTTATTTCCGTGGCTGTCGACACGGTAATCTGTCCAGTCCTCAACGAGGTTTTGGCAGGAGAGTCAGAGAAGAGCTACCTTGAGCACCTACAGTATCTCACTGAAATCCCCTTTAAAGAAGCAGACATGGGTCGTAAAGAAGCCGAATTTGACTGGAAGAAGACCACTGACAACATTCAGGAGGTGTTTGACTTCATGGAGGTTCTTGGCTCGGGCGCGTTCTCCGAGGTGTTCATGgtgaaggagaggaagacaggcaAGCTGTTTGCCATGAAGTGtgtgaagaagaagcagaagagtATTCAGAATCTGGAGAACGAGATTGCCGTGTTGAGAAAGATCAAACACGATAACGTCGTTGGGCTGGAGGATTTTTATGAAAGTCGTTCTCATTACTACCTTGTCATGCAACTCGTTGCTGGGGGTGAGCTGTTTGACCGTATCCTGGACCGGGGGATGTACTCAGAGAAGGATGCTAGCAGGGTCATCCAACAGGTGCTCCAGGCTGTACAATACCTCCATCAGAATGGCATCGTACACCGTGACCTCAAGCCGGAGAACCTGCTGTATTACAGCCAGGATGAGAGCTCCAAGATCATGATCAGTGACTTTGGCCTGTCCAAGATGGAGGACAACGGTGTTATGTCCACAGCCTGCGGCACTCCAGGATATGTGGCCCCTGAAGTCTTGGCCCAGAAACCCTACAGCAAGGCAGTGGACTGCTGGTCTATTGGAGTCATCACCTATATCCTTCTCTGTGGATATCCCCCTTTCTATGAGGACACTGAGACGCGACTGTTCTCGAAGATCATGAAGGCACAGTACGAGTTTGACTCTCCCTTCTGGGATGACATCTCTGAATCAGCCAAAGATTTTATCCGCAACATGATGCAGAAGAACCCGAAGATGCGCTTCACCACAGAGCAGGCTCTCAGGCATCCCTGGATCATTGGAAATACTGCACGGAGCCAGGATATCTACCACTCTGTCAGTGTCCAGATCCAGAAGAACTTTGCCAAGACCAAGTGGAAGCAAGCCTTTAACGCCACCGTGGCCATCAATCACATGAagaagctgcagctggcccactCTGAGCTGGTGGTCAAGGCGCAGACCCTCAACATGCCCACCATCCAGGTTATCGACGTCTCCTCCCCCGCCAATTCCCACAACCCCCCGGATCCCGATAGGCTGGAACCCAAAGGGAACCAAATTACCCTACCAATCAGCTCCAGAGACACGAAGAGCCACCAGCCCTTAAAGATCAGCCAAAGCGAGCCGGCACACGCCCATACCCTCGCAGAGACGGGCAAATACGCCTACCACTCTGAGCCTGCGAACCTTAATACGTACAGGGCAACGGGCAACCGCAATGGCCAAGTTCTCCAGACTGGAGTGTGCTCTGTCATGTGAAGGATCTTTGGAAGGACTTCCACTTTGCGTGGAATTTTTTTACTAGGTCAGTCAGCTGACTTGGTCATGTCTGCTTCCTTCCTGTGGGCCAGTGGATTCTCAGGATGGCCAGTGAGATCCAGAATCCGCCGGGTTTCTGAAAATAATTCTGAACAGTGCCTAGAAACCTCCTTGAAAACATTCTGGACATACTGTACACCGACAGACgttcacacacatacatgtatataACAAGGTATTCCACGATGTCCAGAATCCCAGGGAGGAGGGGCACTATGCTCACTAGGGACTGGGTGATGTATGTATTATACCATGAAGAAACAATTATTCACATAAGAATTTTGTGTTATAACCCTTGAAGAAGGAGTTGATGTCAGGGAAAGGTTTGTTTGCGTCATGATGTGGTGATGCGATGTGGAGCAAAGTTTAAAGTTGAAAGACAGCTAAAGAAGAAATAGGACTACTGTGTACATGACTATAAGACTGACTTAAGTGGTTGTGCTGTTCCATGGTGTGGGGAGATGTTCGAAACAGAAGGCAGGTTTTGATGTGGAATATATGACCAACCAGGATTTTATCCCCATGTACATTGATGGGGGAAGTTGATGGGGAACATTGAGTAACTAAACGATAGTGTTATCCATGTGCTCACAGTCAACTCATTAACAGTGTAAATACCACTCTTAATGATTTGCCAACTCACCAGCACTCATATTAATGAAAGTTGAGATTGTAAATCTAATTTATCCTTGTGCTGAAGAGATTTGGATACTATTATTATGATTTTATTACTGTATTGATAATATTATGTCTCCTTTTAATACAAGGAGGTGAGTTGCTTCTGTCCCAAGCTCAGCGGAGCTTGCTGTTGGTGTTTTGTAAATATTCTAGATTGGGGTTTTTTCTCTGTAGcttcattgtaaataaataaaatacgtACACAAACAA

Function

NR:

description
calcium/calmodulin-dependent protein kinase type 1D-like isoform X1

GO: NA

KEGG:

id description
K08794 CAMK1; calcium/calmodulin-dependent protein kinase I

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566022.2 False 2571 mRNA 0.46 11 42420215 42429158
XM_021566021.2 False 2461 mRNA 0.47 11 42420215 42429826
XM_021566023.2 True 2436 mRNA 0.47 11 42420215 42430379

Neighbor

gene id symbol gene type direction distance location
LOC110492049 LOC106572624 coding downstream 3623 42415240 ~ 42416592 (-)
LOC110492048 taf8 coding downstream 5002 42409354 ~ 42415213 (-)
LOC110492045 LOC106567106 coding downstream 21342 42387236 ~ 42398873 (-)
LOC110492036 LOC106567102 coding downstream 62641 42331636 ~ 42357574 (-)
LOC100136795 LOC106567100 coding downstream 109036 42276720 ~ 42311179 (-)
LOC110492051 LOC106567111 coding upstream 15394 42445773 ~ 42468841 (-)
src LOC106567112 coding upstream 45320 42475699 ~ 42526905 (-)
LOC110492054 LOC106567113 coding upstream 118266 42548642 ~ 42569532 (-)
LOC110492056 LOC106567114 coding upstream 185028 42615407 ~ 42663808 (-)
LOC110492057 LOC106567116 coding upstream 243976 42674355 ~ 42713896 (-)
G1375845 NA non-coding downstream 12321 42407038 ~ 42407894 (-)
G1375841 LOC106567107 non-coding downstream 13280 42399955 ~ 42406935 (-)
G1375833 NA non-coding downstream 39643 42380249 ~ 42380572 (-)
G1375832 NA non-coding downstream 41284 42378635 ~ 42378931 (-)
G1375831 LOC106567105 non-coding downstream 41685 42378286 ~ 42378530 (-)
G1375853 NA non-coding upstream 2601 42432980 ~ 42433428 (-)
G1375854 NA non-coding upstream 4046 42434425 ~ 42434650 (-)
G1375855 NA non-coding upstream 4867 42435246 ~ 42436720 (-)
G1375856 NA non-coding upstream 7481 42437860 ~ 42438207 (-)
G1375859 NA non-coding upstream 9569 42439948 ~ 42441684 (-)
LOC110492013 LOC106567078 other downstream 564854 41852627 ~ 41857489 (-)
G1375495 NA other downstream 756166 41663748 ~ 41664049 (-)
G1374491 LOC106567058 other downstream 1390809 41026775 ~ 41029406 (-)
rps26 LOC106567051 other downstream 1565626 40852758 ~ 40854671 (-)
G1374237 LOC106567042 other downstream 1894937 40522997 ~ 40525278 (-)
LOC110492059 LOC106567118 other upstream 341927 42767849 ~ 42773348 (-)
LOC110491060 LOC106567122 other upstream 688509 43117471 ~ 43124619 (-)
G1376748 NA other upstream 729133 43159512 ~ 43170042 (-)
LOC110492063 LOC106567124 other upstream 787430 43217803 ~ 43243705 (-)

Expression


Co-expression Network