LOC110491060 (LOC106567122)


Basic Information

Item Value
gene id LOC110491060
gene name LOC106567122
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 43117471 ~ 43124619 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946950.1
ACAGAGCACTAGTCAGAAACATGTTATTGCGCTTCTTCTCAGACTGAACCCTTCATGCCAGCCTCAtgcagccatctattttgtatttttatctcAATCACAAACATAATCTAAATGATAAAAATGAGACAAAGAGAAAATCATCGGGATGTTAATTTCCATCAGTTGTTGTCAACATTTGAAGTCGTCGCTTTCTTTCACCAATATAGCATACTGCTGGATCCAAGAAAATAATCGTATCGCGTCAGAAGCGTCTGCGACGGGGGACCAAAGAGGAGGACGTGGAATTTGATACAGAGAGGGAATTTTTTAAAATGGTGCTGTTAGGGTTGTTGGACAATGCGATGgtaaaatatattgtttttatgtTTAGTTTGGCGTTGATCTCTGAGTTTGTGGGAGCTCAGAATGACACGGAGCCTATAGTCCTGGAGGGCAAATGTCTTGTGGTTTGCGACTCTAATCCGACTACGGATTGGAAGGGCTCGTCCTCTCCTCTAGGCATTTCGGTGCGCGCGGCAAACTCCAAGGTGGCTTTTTCTGCGGTTCGGAGCAACAATCACGAACCGTCGGAGATGAGTAATAAAACAAGAATCATATACTTCGACCAAGTTCTTGTGAATATAGGCAACTATTTCACTTTGGAGTCTGTGTTTTTGTCACCCAGAAAAGGGATCTACAGTTTTAATTTTCATGTTATAAAAGTGTACCAGAGTCAGACTATACAGGTGAACTTAATGTTGAATGGGAAACCTGTCATCTCAGCTTTTGCGGGTGACAAAGACGTAACTCGAGAGGCAGCCACCAATGGAGTTCTGCTCTTTTTGGATAAAGAGGACAAGGTCTACCTTAAACTGGAGAAGGGAAATCTAGTTGGCGGATGGCAATATTCTACATTCTCTGGTTTCCTTGTTTtcccactgtaaaaaaaaaaagaagaaagccCCACCGTTCAAATGAATTTATCAACAATGTACTGTCACTGTATAATCAAAACATTTCTACATCAGTTGGATCTAGCCAAAGGATGGATAATATCATGTTCCGTGTTCATGGATTACaacagagagaagaaaagagacatTGAAAAGCTTTGATGTTTTATGGAAATGGGAATCCCTCTGAAATGCAATACTGCTCAAAAAAACGACTTCAACAGACGAACATGCGTTCACAGCAATTCTTCACACACAAACTTAATAGTCGCAGAATATGTTTAGCATAGCATCTTTTGAAATTCGTTTTTTTCTTAGCAAGTGGTATTTAGCAGTGACAGATCCTGTGTCATCTGATTATACAAAAAGCTGTGATTGAGTAGGACTGCATAGAAGACCCAGGTCGTTTCAGACAGCACATCACCAGTTTGTTTTGTCTGGCCATTCCCATGTGTATCTCATTGCTAGACCAGCTCTGGCCACTAAACAATCAGCTGTCTGAACCATAATGGAGCAACCAACTtgtttctgtatgtgtgagaAACACTTTTTGGGTTAGGGAATTACTGACAAATTGGGGTACAATGTGCCCAACGTTTGCAGACAGATGAACACAATGCAGTTTAATTGCAGGCATAGCCTTTAGCcttgtatacatatatacacagtattttaTAAGTCTAAACAGATGTTGTAGATGCAATATTTTAATTTGAACTGAGAAGTAATGGAAGCTCAAGTTGATGCTCAAGAGTTGGAAACTGCATTAGTTATGGTCTTTTGATGTCACTATTGACCTCCCTCATCACATGCCTATGCTGCTGGCCATGTCTATACCTGTCTGTGGTCAGTCAcatgtcatgtgtttgtttgaactTCGACCTATGATGGGTACACCCGTGGAGTCATGTGCAATGCTTCATTGAAGAGATCACAATGGTATATGTTAacactttttaaaaacattttatgcacatcaatgtatttatttatttaatatttacaCATTCATTCATTTATAATAGCTTGGTGAATTTAAATGCTTATTTAAGTGAATGACCAAATTTGGCATTTTACATCCAATGATTTACATTTGTTATGCTATCAATGACTGCCACATGACCTGTGGCACCTGCAAAGTATCTGAGATTCCATCTTACCATTTGTATACAGCCGGTGCATTCTAACAATATATTAAACATTTGGGAGATTTGGAAAGGGAATTATTCTAGCCAATCTATCACCAGATGAAATGTAAAAGAAATAAGGTGTGTGTGAAACGTCTGGAGACAATTTCTACACAAACTTAATCTCACTCACATTCTTGAACCTTTCCCCTTGAATACAATTAGGGAGAGTATCTTGCTAGCCATTTTGCATTTATGGAACAGCTGTTGTGTTCACTCTTGACCTTTGTGACTATACGGTACTACCCATATTTATTGAGTTATACTATCTAGACTCAGAATGGTTTGATTTGCTCCTAACTTATATTCCCGAGTTAACAATTGTTTTCTGTGCATATCAATATCATGATAGTGAGaatatgtgttttgtgtgtgaatCTCATGCTTCAGTTAGTATAGCTGTGTGCTTCTATTGTCACCTGATGCTGCTACAGTTCATTTCCAAATGGAATGGAATAGGTTTGGCCTATTTCACAATTCTCAGTCTGGAAACTCAAATCCCTATAATGTCAATGCATATAGACCTTCTGTGTGATCGTTGTACATTTGGCACAGCTCTCAAATTAACATGCTTTACTGCTGGACTGAATAATAGTGACATGGCCTCATTATGGACACTGGAGAAGAAAACATCTCAGTATTGTATttcaaatgaatgaatgaatgaatgtacAGAATGGAGTAAAAAAAAGGTGTATGTTTACAATTGTCCGTTGTGGTATAATGTGAAAAGTATTGTGACTCAAATGACTTACTTCATTATTTCATGGAATCTTTTCACTTTCTTGAATTGAAATCAATTACAACTGAGAATCTGAAAAATAATCCTGTGCAAATGATTGGCTGACCAATTTACCTTAAGAATTTATAATAATGCCAATGGATTATCACTCACAAAGTTTCACTCCCACTGTAGATGTACTTGACCAATATTCGAAGGCGGCAACAATCCAAAGTATGGATTTTCATCAAAAAGTACCTGGGTTGTGTGAATACCGGTAACCCAAAATATGTATTCTAGGGATTCCAGAATAATTCCACATACCACATGAAAGTATGCAATCCATGAAATCCACCATTGGTAAATATCTGTATTCAAAAACATGGATGGATTATTGTTGAGATTTCCAAGAAGCTTATCATGCAGTCATATTGTATTTCTGTCAAATTAAATTTGAGGCATCTGTGTTGAA
>TU1572714
GAGATTCCATCTTACCATTTGTATACAGCCGGTGCATTCTAACAATATATTAAACATTTGGGAGATTTGGAAAGGGAATTATTCTAGCCAATCTATCACCAGATGAAATGTAAAAGAAATAAGGTGTGTGTGAAACGTCTGGAGACAATTTCTACACAAACTTAATCTCACTCACATTCTTGAACCTTTCCCCTTGAATACAATTAGGGAGAGTATCTTGCTAGCCATTTTGCATTTATGGAACAGCTGTTGTGTTCACTCTTGACCTTTGTGACTATACGGTACTACCCATATTTATTGAGTTATACTATCTAGACTCAGAATGGTTTGATTTGCTCCTAACTTATATTCCCGAGTTAACAATTGTTTTCTGTGCATATCAATATCATGATAGTGAGaatatgtgttttgtgtgtgaatCTCATGCTTCAGTTAGTATAGCTGTGTGCTTCTATTGTCACCTGATGCTGCTACAGTTCATTTCCAAATGGAATGGAATAGGTTTGGCCTATTTCACAATTCTCAGTCTGGAAACTCAAATCCCTATAATGTCAATGCATATAGACCTTCTGTGTGATCGTTGTACATTTGGCACAGCTCTCAAATTAACATGCTTTACTGCTGGACTGAATAATAGTGACATGGCCTCATTATGGACACTGGAGAAGAAAACATCTCAGTATTGTATttcaaatgaatgaatgaatgaatgtacAGAATGGAGTAAAAAAAAGGTGTATGTTTACAATTGTCCGTTGTGGTATAATGTGAAAAGTATTGTGACTCAAATGACTTACTTCATTATTTCATGGAATCTTTTCACTTTCTTGAATTGAAATCAATTACAACTGAGAATCTGAAAAATAATCCTGTGCAAATGATTGGCTGACCAATTTACCTTAAGAATTTATAATAATGCCAATGGATTATCACTCACAAAGTTTCACTCCCACTGTAGATGTACTTGACCAATATTCGAAGGCGGCAACAATCCAAAGTATGGATTTTCATCAAAAAGTACCTGGGTTGTGTGAATACCGGTAACCCAAAATATGTATTCTAGGGATTCCAGAATAATTCCACATACCACATGAAAGTATGCAATCCATGAAATCCACCATTGGTAAATATCTGTATTCAAAAACATGGATGGATTATTGTTGAGATTTCCAAGAAGCTTATCATGCAGTCATATTGTATTTCTGTCAAATTAAATTTGA
>TU1572716
TGTTCACTCTTGACCTTTGTGACTATACGGTACTACCCATATTTATTGAGTTATACTATCTAGACTCAGAATGGTTTGATTTGCTCCTAACTTATATTCCCGAGTTAACAATTGTTTTCTGTGCATATCAATATCATGATAGTGAGaatatgtgttttgtgtgtgaatCTCATGCTTCAGTTAGTATAGCTGTGTGCTTCTATTGTCACCTGATGCTGCTACAGTTCATTTCCAAATGGAATGGAATAGGTTTGGCCTATTTCACAATTCTCAGTCTGGAAACTCAAATCCCTATAATGTCAATGCATATAGACCTTCTGTGTGATCGTTGTACATTTGGCACAGCTCTCAAATTAACATGCTTTACTGCTGGACTGAATAATAGTGACATGGCCTCATTATGGACACTGGAGAAGAAAACATCTCAGTATTGTATttcaaatgaatgaatgaatgaatgtacAGAATGGAGTAAAAAAAAGGTGTATGTTTACAATTGTCCGTTGTGGTATAATGTGAAAAGTATTGTGACTCAAATGACTTACTTCATTATTTCATGGAATCTTTTCACTTTCTTGAATTGAAATCAATTACAACTGAGAATCTGAAAAATAATCCTGTGCAAATGATTGGCTGACCAATTTACCTTAAGAATTTATAATAATGCCAATGGATTATCACTCACAAAGTTTCACTCCCACTGTAGATGTACTTGACCAATATTCGAAGGCGGCAACAATCCAAAGTATGGATTTTCATCAAAAAGTACCTGGGTTGTGTGAATACCGGTAACCCAAAATATGTATTCTAGGGATTCCAGAATAATTCCACATACCACATGAAAGTATGCAATCCATGAAATCCACCATTGGTAAATATCTGTATTCAAAAACATGGATGGATTATTGTTGAGATTTCCAAGAAGCTTATCATGCAGTCATATTGTATTTCTGTCAAATTAAATTTGA
>TU1572715
TGTTCACTCTTGACCTTTGTGACTATACGGTACTACCCATATTTATTGAGTTATACTATCTAGACTCAGAATGGTTTGATTTGCTCCTAACTTATATTCCCGAGTTAACAATTGTTTTCTGTGCATATCAATATCATGATAGTGAGaatatgtgttttgtgtgtgaatCTCATGCTTCAGTTAGTATAGCTGTGTGCTTCTATTGTCACCTGATGCTGCTACAGTTCATTTCCAAATGGAATGGAATAGGTTTGGCCTATTTCACAATTCTCAGTCTGGAAACTCAAATCCCTATAATGTCAATGCATATAGACCTTCTGTGTGATCGTTGTACATTTGGCACAGCTCTCAAATTAACATGCTTTACTGCTGGACTGAATAATAGTGACATGGCCTCATTATGGACACTGGAGAAGAAAACATCTCAGTATTGTATttcaaatgaatgaatgaatgaatgtacAGAATGGAGTAAAAAAAAGGTGTATGTTTACAATTGTCCGTTGTGGTATAATGTGAAAAGTATTGTGACTCAAATGACTTACTTCATTATTTCATGGAATCTTTTCACTTTCTTGAATTGAAATCAATTACAACTGAGAATCTGAAAAATAATCCTGTGCAAATGATTGGCTGACCAATTTACCTTAAGAATTTATAATAATGCCAATGGATTATCACTCACAAAGTTTCACTCCCACTGTAGATGTACTTGACCAATATTCGAAGGCGGCAACAATCCAAAGTATGGATTTTCATCAAAAAGTACCTGGGTTGTGTGAATACCGGTAACCCAAAATATGTATTCTAGGGATTCCAGAATAATTCCACATACCACATGAAAGT
>TU1572712
GCGACTCTAATCCGACTACGGATTGGAAGGGCTCGTCCTCTCCTCTAGGCATTTCGGTGCGCGCGGCAAACTCCAAGGTGGCTTTTTCTGCGGTTCGGAGCAACAATCACGAACCGTCGGAGATGAGTAATAAAACAAGAATCATATACTTCGACCAAGTTCTTGTGAATATAGGCAACTATTTCACTTTGGAGTCTGTGTTTTTGTCACCCAGAAAAGGGATCTACAGTTTTAATTTTCATGTTATAAAAGTGTACCAGAGTCAGACTATACAGGTGAACTTAATGTTGAATGGGAAACCTGTCATCTCAGCTTTTGCGGGTGACAAAGACGTAACTCGAGAGGCAGCCACCAATGGAGTTCTGCTCTTTTTGGATAAAGAGGACAAGGTCTACCTTAAACTGGAGAAGGGAAATCTAGTTGGCGGATGGCAATATTCTACATTCTCTGGTTTCCTTGTTTtcccactgtaaaaaaaaaaagaagaaagccCCACCGTTCAAATGAATTTATCAACAATGTACTGTCACTGTATAATCAAAACATTTCTACATCAGTTGGATCTAGCCAAAGGATGGATAATATCATGTTCCGTGTTCATGGATTACaacagagagaagaaaagagacatTGAAAAGCTTTGATGTTTTATGGAAATGGGAATCCCTCTGAAATGCAATACTGCTCAAAAAAACGACTTCAACAGACGAACATGCGTTCACAGCAATTCTTCACACACAAACTTAATAGTCGCAGAATATGTTTAGCATAGCATCTTTTGAAATTCGTTTTTTTCTTAGCAAGTGGTATTTAGCAGTGACAGATCCTGTGTCATCTGATTATACAAAAAGCTGTGATTGAGTAGGACTGCATAGAAGACCCAGGTCGTTTCAGACAGCACATCACCAGTTTGTTTTGTCTGGCCATTCCCATGTGTATCTCATTGCTAGACCAGCTCTGGCCACTAAACAATCAGCTGTCTGAACCATAATGGAGCAACCAACTtgtttctgtatgtgtgagaAACACTTTTTGGGTTAGGGAATTACTGACAAATTGGGGTACAATGTGCCCAACGTTTGCAGACAGATGAACACAATGCAGTTTAATTGCAGGCATAGCCTTTAGCcttgtatacatatatacacagtattttaTAAGTCTAAACAGATGTTGTAGATGCAATATTTTAATTTGAACTGAGAAGTAATGGAAGCTCAAGTTGATGCTCAAGAGTTGGAAACTGCATTAGTTATGGTCTTTTGATGTCACTATTGACCTCCCTCATCACATGCCTATGCTGCTGGCCATGTCTATACCTGTCTGTGGTCAGTCAcatgtcatgtgtttgtttgaactTCGACCTATGATGGGTACACCCGTGGAGTCATGTGCAATGCTTCATTGAAGAGATCACAATGGTATATGTTAacactttttaaaaa

Function

NR:

description
PREDICTED: cerebellin-4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946950.1 False 3315 mRNA 0.38 3 43117471 43124619
TU1572714 False 1220 lncRNA 0.35 1 43117486 43118705
TU1572716 False 968 lncRNA 0.35 1 43117486 43118453
TU1572715 False 846 lncRNA 0.35 1 43117608 43118453
TU1572712 True 1445 TUCP 0.40 3 43118888 43124166

Neighbor

gene id symbol gene type direction distance location
LOC110492062 LOC106567121 coding downstream 116576 42985882 ~ 43000895 (-)
LOC110492061 LOC106567120 coding downstream 141752 42968159 ~ 42975719 (-)
LOC110492059 LOC106567118 coding downstream 344123 42767849 ~ 42773348 (-)
LOC110492058 LOC106567117 coding downstream 391854 42714241 ~ 42725617 (-)
LOC110492057 LOC106567116 coding downstream 403575 42674355 ~ 42713896 (-)
LOC110492905 LOC106567327 coding upstream 86295 43210914 ~ 43212485 (-)
LOC110492063 LOC106567124 coding upstream 93184 43217803 ~ 43243705 (-)
LOC110492064 LOC106567125 coding upstream 128553 43253172 ~ 43326500 (-)
nol9 nol9 coding upstream 216016 43340635 ~ 43347748 (-)
LOC110492067 klhl21 coding upstream 231876 43356495 ~ 43375265 (-)
G1376660 NA non-coding downstream 15416 43101640 ~ 43102055 (-)
G1376634 NA non-coding downstream 41356 43075887 ~ 43076115 (-)
G1376609 NA non-coding downstream 58813 43058421 ~ 43058658 (-)
G1376595 LOC106567325 non-coding downstream 69098 43046526 ~ 43048373 (-)
G1376580 NA non-coding downstream 83671 43033540 ~ 43033800 (-)
G1376705 NA non-coding upstream 8473 43133092 ~ 43133311 (-)
G1376728 NA non-coding upstream 27032 43151651 ~ 43151856 (-)
G1376765 NA non-coding upstream 48789 43173408 ~ 43173690 (-)
G1376873 NA non-coding upstream 59490 43184109 ~ 43184408 (-)
G1376878 NA non-coding upstream 67337 43191956 ~ 43192280 (-)
LOC110492054 LOC106567113 other downstream 548145 42548642 ~ 42569532 (-)
LOC110492013 LOC106567078 other downstream 1262110 41852627 ~ 41857489 (-)
G1375495 NA other downstream 1453422 41663748 ~ 41664049 (-)
G1374491 LOC106567058 other downstream 2088065 41026775 ~ 41029406 (-)
G1376748 NA other upstream 34893 43159512 ~ 43170042 (-)
G1376991 NA other upstream 212880 43337162 ~ 43338555 (-)
G1377482 NA other upstream 567701 43692320 ~ 43692838 (-)
G1378530 NA other upstream 1428395 44553014 ~ 44553547 (-)
LOC110491060 LOC106567122 other upstream 183 43117471 ~ 43124619 (-)

Expression


Co-expression Network