LOC110492905 (LOC106567327)


Basic Information

Item Value
gene id LOC110492905
gene name LOC106567327
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 43210914 ~ 43212485 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567367.2
ATGACTGCACAGGGGTATATTAAAAGTTCGCGAGGGTGCACATACTGTCATTCACAATCTGATAGTCAGGACGTAAGGACGCCTGCGTCACAAATTGGATTTGGCAACTTCTTCTTTGAAAGAAACATCAACATGCTCCCTGGATATCAGATACCGGGTTTGGGATCTCAACCCAGGGTACGACAGCAACAAGCCCCTCATCTTGCTGCGATGACTGGGGTCCCTTTGGCATATTCAGGACTACAGGGATACAACTTTATCCCCTATCCACACTACGGACACATTGCGCACATGAACAACTCCTTCGACCTGAAGACTGTCTCTCCGTATTATGAAGCGCTTCTCGGCCGAGGAGGGCCGTTCTACCCACAATACCGACCAGGCGCAACTGATGACCCAAGCAGAGTCGCCAAGGTGgctacccgggaaagcaccagcGCGCTCAAGGCCTGGTTGAACGAGCATCTCAAGAACCCATATCCTACAAAGGGCGAGAAGATCATGCTTGCCATCGTAACCAAGATGAGCCTCACGCAGGTGTCAACTTGGTTTGCCAACGCCAGGCGACGGCTGAAGAAGGAGAATAGGGTGAGCTGGGCGTTCAAGGGGAAATCTGACGAGGAGGAGGGCGAAAGCGACGAGGAGAAGAGTGATGTCACTCTGCAGAAAAGCGCTTTGGTTGATGAAGACGAAATAGATCTTCAAACCGTCGATGACAAGGTGGAGGATATTGGACATAGAGTGGACAACTCAACGCCAGAGTTGGTGGATGCACGCCTGGAGAAACAATCAAGCGATGACCATAGAGACAGCACGCGTGCTCACGGGGAAAATTATGTCGAAAAGAGTTACACCAAACGCACATCATCCCCATCTCGTCTAGGATGTAAGGACAACGCTGAGTGTCAAAAGCCCAAAATATGGTCTTTGGCAGAAACCGCGACCTCGGAAACGGTGAAAAAGCCCCACCAGGACAATGAGTGTCATCCCAGGAGCACAGAAATGGGCAAATTCTGGTCAGAATGGGCATCAAGGAATGGACTGTATATTCCCAGATATACTGCTCACGATATTCTTTAACGAAGCATTTACAGTTTTAAATGACCAAAAAACACGTTTACATCTTTTGCACTTTAAAATGCCAAACTCCAGGGATTGGAACAGGCTTATTTTTTTTATGTGGGAGCCTACACGCTTACTATggaaaatgctgggcaggcctaTATGTTGTTTGGCTTCTTGTAAGACCGAAGACACTTACAGAGTTATGTTTTGTGTACATACGTGTAGATGTATTTGCATGAATAATCTGTACATTCTAATTTCATTTGTCTTATCATTAACATTTATTTTGGTAAAATAAAATCCC

Function

NR:

description
iroquois-class homeodomain protein irx-1-B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567367.2 True 1369 mRNA 0.47 2 43210914 43212485

Neighbor

gene id symbol gene type direction distance location
LOC110491060 LOC106567122 coding downstream 86295 43117471 ~ 43124619 (-)
LOC110492062 LOC106567121 coding downstream 210019 42985882 ~ 43000895 (-)
LOC110492061 LOC106567120 coding downstream 235195 42968159 ~ 42975719 (-)
LOC110492059 LOC106567118 coding downstream 437566 42767849 ~ 42773348 (-)
LOC110492058 LOC106567117 coding downstream 485297 42714241 ~ 42725617 (-)
LOC110492063 LOC106567124 coding upstream 5318 43217803 ~ 43243705 (-)
LOC110492064 LOC106567125 coding upstream 40687 43253172 ~ 43326500 (-)
nol9 nol9 coding upstream 128150 43340635 ~ 43347748 (-)
LOC110492067 klhl21 coding upstream 144010 43356495 ~ 43375265 (-)
LOC110492068 LOC106567131 coding upstream 284697 43497182 ~ 43503930 (-)
G1376878 NA non-coding downstream 18634 43191956 ~ 43192280 (-)
G1376873 NA non-coding downstream 26506 43184109 ~ 43184408 (-)
G1376765 NA non-coding downstream 37224 43173408 ~ 43173690 (-)
G1376728 NA non-coding downstream 59058 43151651 ~ 43151856 (-)
G1376705 NA non-coding downstream 77603 43133092 ~ 43133311 (-)
G1376901 NA non-coding upstream 8946 43221431 ~ 43290754 (-)
G1376991 NA non-coding upstream 124677 43337162 ~ 43338555 (-)
G1376993 zbtb48 non-coding upstream 135672 43348157 ~ 43348953 (-)
G1376994 zbtb48 non-coding upstream 137085 43349570 ~ 43349870 (-)
G1376748 NA other downstream 40872 43159512 ~ 43170042 (-)
LOC110492054 LOC106567113 other downstream 641588 42548642 ~ 42569532 (-)
LOC110492013 LOC106567078 other downstream 1355553 41852627 ~ 41857489 (-)
G1377482 NA other upstream 479835 43692320 ~ 43692838 (-)
G1378530 NA other upstream 1340529 44553014 ~ 44553547 (-)
plxna2 LOC106567158 other upstream 1705528 44621739 ~ 44964691 (-)

Expression


Co-expression Network