LOC118939539


Basic Information

Item Value
gene id LOC118939539
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 43726575 ~ 43733564 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036525.1
tttagttcaactgttgtacgcCATCAGAACCTAAACATGAGCTAGTTGTAATttatttgtaaacaatgtaaacaaacactgtagctATAGGCCCAAAACATAgttcaaactataattttgatatcagggatggtcagtccttgcataaATAGCTCTTTCTACGAATTTGATTGTGGTAACATTTCTCCAGGCCAATCTCTCAGCTTTTTATCAAAACAAAGGTGCTGGACAAGATGTTGGCCGCGGCTGCATCCTTGTCTCGATTGGGGGAAAAAATATTATGCTTGATTGTGGGATGCACATGGGTTTCAATGATAGACGATTCCCAGATTTCTACATAACACAAggacagcatgataatgcacggtcgCATGCACGGCTCCATGTAGCAAAGATGTGTACACAATTCCtcgaagctgaaaatgtcccagttcttccatggcccgcatactcaccagacatgtcacccattaagcatgtttgggatgctctggatcgatgtgtacgacagcgtgttccagttcccggcaatatccagcaacttcgcatagCCGTTGAAGAGGAGTCGGATGACATTccacaggacacaatcaacagcctaatcAACTCTGTTTAAAGGAgatgtcacactgcatgaggcaaatggtgatcacaccagaaactgtctggttttctgatccattgACCTTTTTTCTAAGGTAACTTTGACCAACAGATTCATATcgctattcccagtcatgtgaaatccataaattaatttaattcaattgactgatttccttacgtgaactgtaactcagttaaaTCGTTTTGGTTCAGTATAGATTTATTCGCCACACTGGGTTTTGCAGctgcaaaaacacacatacaattCACACAAGCATATATTTATACCTTCCAATGTGGCGGAGTCACCTTGTATTTCTAGGATAAACAATCAGTCTCTGTTGGTAGGCAAGAACTGAGTCTGTTCCTCCTATTGGTGTTATCGTGGGCCAACCTGAGTCCAGAACCTTCATGGGCAGGGATGTGTGTATGAGAATACCTCAGTTTGAGTATTGTTGGGATGGACACCTCTAGCCCCCCTCTGAGGTTTCTTCTCCAACTTTGTCCTCACCTCCACGTCTCTCTTTGCCCTAGTTCCACAGAAAATCGCCTGACCTTACCAGGAACTGAGAGTCGACTTTGGCTCTTCATCTACTTCCTTTAGAAATATGAATATAAAAGGAGTTCACTCACTGCTTTAGAATGTAGTGAAATACTGGTAAATTCAAGAGGGTGCTAATAAATGAATGTCTAA

Function

NR:

description
Transposable element Tcb2 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036525.1 True 1300 mRNA 0.42 3 43726575 43733564

Neighbor

gene id symbol gene type direction distance location
LOC110491064 cpsf3l coding downstream 7594 43713174 ~ 43718981 (-)
LOC110492072 cenb5 coding downstream 14241 43603093 ~ 43712334 (-)
LOC110492071 LOC106567135 coding downstream 127436 43578536 ~ 43599139 (-)
LOC110492069 LOC106567132 coding downstream 162133 43534694 ~ 43564442 (-)
LOC110492068 LOC106567131 coding downstream 222645 43497182 ~ 43503930 (-)
LOC110492074 LOC106567140 coding upstream 8731 43742295 ~ 43747314 (-)
LOC110492076 LOC106567144 coding upstream 89151 43822715 ~ 43828920 (-)
LOC110491066 LOC106567328 coding upstream 212920 43946484 ~ 43953965 (-)
LOC110492081 LOC106567146 coding upstream 257800 43991364 ~ 43997840 (-)
LOC110492085 ptn12 coding upstream 696312 44429876 ~ 44449494 (-)
G1377508 NA non-coding downstream 1216 43725155 ~ 43725359 (-)
G1377491 NA non-coding downstream 1577 43704560 ~ 43724998 (-)
G1377336 NA non-coding downstream 126125 43600101 ~ 43600450 (-)
G1377026 NA non-coding downstream 326372 43399575 ~ 43400203 (-)
G1377516 NA non-coding upstream 6785 43740349 ~ 43740555 (-)
G1377535 NA non-coding upstream 39862 43773426 ~ 43774187 (-)
G1377543 NA non-coding upstream 57928 43791492 ~ 43791697 (-)
G1377545 NA non-coding upstream 61168 43794732 ~ 43795881 (-)
G1377554 NA non-coding upstream 76898 43810462 ~ 43810684 (-)
G1377482 NA other downstream 33737 43692320 ~ 43692838 (-)
G1376991 NA other downstream 388020 43337162 ~ 43338555 (-)
LOC110492063 LOC106567124 other downstream 502192 43217803 ~ 43243705 (-)
G1376748 NA other downstream 556533 43159512 ~ 43170042 (-)
LOC110491060 LOC106567122 other downstream 602409 43117471 ~ 43124619 (-)
G1378530 NA other upstream 819450 44553014 ~ 44553547 (-)
plxna2 LOC106567158 other upstream 1184449 44621739 ~ 44964691 (-)
slc48a1a LOC106567162 other upstream 1582383 45315947 ~ 45320378 (-)
LOC110492109 LOC106567177 other upstream 1884653 45613938 ~ 45627786 (-)
G1380431 NA other upstream 1971546 45705110 ~ 45705453 (-)

Expression


Co-expression Network