LOC110492076 (LOC106567144)


Basic Information

Item Value
gene id LOC110492076
gene name LOC106567144
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 43822715 ~ 43828920 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946983.1
CCAAACTAGCAATTCGATGTGGCTTTATTTAGCTAATCTTGGAATGAAATCAATAGTTTTTAAATATAAAAGTAGCCAGTCTATTAAAATTAGCTTGATGAGAAATATGTGTttacaactagctagctaactacgtCAGTGCAGGGCTAAATTACAGAGCCGGGACCTAACTAGTTATGTTAGAAGATCACAGGATGGATACTAGTGGGAAACCCTCCACAGCCCAATTTCTGCTATTAGCCACCAGCTCAGCACTTACTGCAGTCTTCTACTCTGTGTACTGGAGGAGGACAACAACAGTAGCAAGATTAAAGGGAGCCAAGAAAGTGTCTATTGATCAGGATATGAAGAACATCCTGACAGAAGCACCAGGAAAATGTGTCCCGTACGCTGTTATTGAAGGTGTTGTGAGATCTGTGAAAGAAACCTTGAACAGCCAGTTTGTGGACAACTGCAAAGGGGTCATCGAGAGGTTAACTCTAAAGGAGAAGAAGATGGTGTGGAATCGCACCACTCATCTCTGGAACGAGAGTGAAAAGGTCATCCACCAGCGTACCAACACGGTGCCCTTTGACCTGGTGTCCCACGACGAGGCTGTGGCAGCCACCATTCGGGTCATCCGTCCCCTGGACTCCTCGGAGCTGGACCTGGAGACCACCTATGAGAACTTTCACCCCACTGCCCAGTCCCTGACCAACGTCATCGGCCACTTCATCAGCGGGGAGCGCCCTAAAgGTATCCACGAGATGGAGGAGATGTTACGTCTGGGGGAGAGTGTGACCGGGGTCGGGGAGCTGGTGCTGGACAACAACCTGGTGAAGCTCCAGCCTCCCAAGCAGGGCCTGAGGTACTTCCTCAGCCGACTGGACTATGACTCCCTGGTGGAGAAGCAGCAGAGCACAGTCAGGTTCTGGAGGATCCTGACTATGATGTTTGGTGTAGTTGCTTCCACAACGCTCTTCTTCATCCTGTGGAAGCAGTGGGCTTACCATacacagaggaggaagaagaagaatgtTCTGGAGGAATTCAAGGAGCAGCAGAGGAAGCGGTTAAGGGAGCTGAATGTGGAGGaggccagtgtttcccctagtGCCTGTACAGTGTGTTTGAGCCAGGAGCGTTCCTGTGTGTTCCTGGAGTGTGGGCATGTCTGTGCTTGTGACCGGTGCTACCAGGCACTGCCAAAGCCAAAGAAGTGCCCTATCTGCAGGGCGACGATAGAGAGGGTAGTGCCTCTTTATAACAGGACTGATCTAATGTCACTGAAAAAAGGATTGTCGGCTTATTTTTCTGTTTTCTTTGCTTTGCTTTTAATTGAAAGATCAAGCTGACTTGTAGCTTGATTTGAGTTATGTCAGTTGAAATGAAAACATGTCATATCCAGGATCCTTCTTAGTTGTAGAATCAACTCAGAACTTGAATGTTTTCACCTCAATGTTTCTCCAAAGCACACATCAAAGCGATTTTGAATAAATAAagacaaacaaaataaatatatccTCAACCTATTTTACAAATCTGTTGGCCCTATACTATCCACACACATTTATGTAAATGTTTATGGCTGCCAGGAGAGGGTGATGTCTGCCTTGCATACCTTTTCAACAGGGAAGAAAGAGTACATCGTATTTTATGATTTAGATAAACCATTGCATTTGCTCTAAGCAGAAAAGGCACAGAAATCATGTACAAAATAAAGGTAtttgcaaattaaaaacattcgATAAAGTATCAAGTTTTTTAAGTGACAATCAGTAAGTTATCATAAAAGAAGGAGCAATTCACAATGGTGTTAATAACTTATTCATGAAGTGTTGACTGTTACGGGATGTCCATTGAACCGAGAAAGTAAAGAATAAATACAATATCACGAGCGTGTCGTGACGAGACAAGTGAATGCACCAGGAAAAAGCTACCTCAGTCGGTGACGGATCTTCTGCCAATTCTGCTAGGGATTGTTTTGCATCGCTCTCCTACACTATTTGCATTTCTCTCCATCAGTCTTTTATTCTGTAAATGACTATTCCATCGATAAAATACTCATTTATTCGTAAAGAGGACGGAACATTTTGGATAAAATGTGTTTTATGCAAGCGATATCAtaggctacagtataatgttCAGTTGATTATCAAGTCATCTTTTTCACTGACGTCTTTCAGTATCGATTATTGACTAAGCTTTTATTGTGAAGACATGTCGGAAAGTATTGCCTTACAATGAGAAAAACTCATTATGGTGCTGATGGCGACAGGTCTCCATCACCGGTCTCCTTGCAGGATGCCAACAACTTCTATTGT
>XM_036946984.1
ttattggatgccaaccgccgttaaacctcatcgaagaagaagtagaacacaaaataaaaaataaaataaaaatattactATGTAAGGAAGTGGAGGAAGATCACAGGATGGATACTAGTGGGAAACCCTCCACAGCCCAATTTCTGCTATTAGCCACCAGCTCAGCACTTACTGCAGTCTTCTACTCTGTGTACTGGAGGAGGACAACAACAGTAGCAAGATTAAAGGGAGCCAAGAAAGTGTCTATTGATCAGGATATGAAGAACATCCTGACAGAAGCACCAGGAAAATGTGTCCCGTACGCTGTTATTGAAGGTGTTGTGAGATCTGTGAAAGAAACCTTGAACAGCCAGTTTGTGGACAACTGCAAAGGGGTCATCGAGAGGTTAACTCTAAAGGAGAAGAAGATGGTGTGGAATCGCACCACTCATCTCTGGAACGAGAGTGAAAAGGTCATCCACCAGCGTACCAACACGGTGCCCTTTGACCTGGTGTCCCACGACGAGGCTGTGGCAGCCACCATTCGGGTCATCCGTCCCCTGGACTCCTCGGAGCTGGACCTGGAGACCACCTATGAGAACTTTCACCCCACTGCCCAGTCCCTGACCAACGTCATCGGCCACTTCATCAGCGGGGAGCGCCCTAAAgGTATCCACGAGATGGAGGAGATGTTACGTCTGGGGGAGAGTGTGACCGGGGTCGGGGAGCTGGTGCTGGACAACAACCTGGTGAAGCTCCAGCCTCCCAAGCAGGGCCTGAGGTACTTCCTCAGCCGACTGGACTATGACTCCCTGGTGGAGAAGCAGCAGAGCACAGTCAGGTTCTGGAGGATCCTGACTATGATGTTTGGTGTAGTTGCTTCCACAACGCTCTTCTTCATCCTGTGGAAGCAGTGGGCTTACCATacacagaggaggaagaagaagaatgtTCTGGAGGAATTCAAGGAGCAGCAGAGGAAGCGGTTAAGGGAGCTGAATGTGGAGGaggccagtgtttcccctagtGCCTGTACAGTGTGTTTGAGCCAGGAGCGTTCCTGTGTGTTCCTGGAGTGTGGGCATGTCTGTGCTTGTGACCGGTGCTACCAGGCACTGCCAAAGCCAAAGAAGTGCCCTATCTGCAGGGCGACGATAGAGAGGGTAGTGCCTCTTTATAACAGGACTGATCTAATGTCACTGAAAAAAGGATTGTCGGCTTATTTTTCTGTTTTCTTTGCTTTGCTTTTAATTGAAAGATCAAGCTGACTTGTAGCTTGATTTGAGTTATGTCAGTTGAAATGAAAACATGTCATATCCAGGATCCTTCTTAGTTGTAGAATCAACTCAGAACTTGAATGTTTTCACCTCAATGTTTCTCCAAAGCACACATCAAAGCGATTTTGAATAAATAAagacaaacaaaataaatatatccTCAACCTATTTTACAAATCTGTTGGCCCTATACTATCCACACACATTTATGTAAATGTTTATGGCTGCCAGGAGAGGGTGATGTCTGCCTTGCATACCTTTTCAACAGGGAAGAAAGAGTACATCGTATTTTATGATTTAGATAAACCATTGCATTTGCTCTAAGCAGAAAAGGCACAGAAATCATGTACAAAATAAAGGTAtttgcaaattaaaaacattcgATAAAGTATCAAGTTTTTTAAGTGACAATCAGTAAGTTATCATAAAAGAAGGAGCAATTCACAATGGTGTTAATAACTTATTCATGAAGTGTTGACTGTTACGGGATGTCCATTGAACCGAGAAAGTAAAGAATAAATACAATATCACGAGCGTGTCGTGACGAGACAAGTGAATGCACCAGGAAAAAGCTACCTCAGTCGGTGACGGATCTTCTGCCAATTCTGCTAGGGATTGTTTTGCATCGCTCTCCTACACTATTTGCATTTCTCTCCATCAGTCTTTTATTCTGTAAATGACTATTCCATCGATAAAATACTCATTTATTCGTAAAGAGGACGGAACATTTTGGATAAAATGTGTTTTATGCAAGCGATATCAtaggctacagtataatgttCAGTTGATTATCAAGTCATCTTTTTCACTGACGTCTTTCAGTATCGATTATTGACTAAGCTTTTATTGTGAAGACATGTCGGAAAGTATTGCCTTACAATGAGAAAAACTCATTATGGTGCTGATGGCGACAGGTCTCCATCACCGGTCTCCTTGCAGGATGCCAACAACTTCTATTGT
>XM_036946985.1
tttattggatgccaaccgccgttaaacctcatcgaagaagaagtagaacacaaaataaaaaataaaataaaaatattactATAAGATCACAGGATGGATACTAGTGGGAAACCCTCCACAGCCCAATTTCTGCTATTAGCCACCAGCTCAGCACTTACTGCAGTCTTCTACTCTGTGTACTGGAGGAGGACAACAACAGTAGCAAGATTAAAGGGAGCCAAGAAAGTGTCTATTGATCAGGATATGAAGAACATCCTGACAGAAGCACCAGGAAAATGTGTCCCGTACGCTGTTATTGAAGGTGTTGTGAGATCTGTGAAAGAAACCTTGAACAGCCAGTTTGTGGACAACTGCAAAGGGGTCATCGAGAGGTTAACTCTAAAGGAGAAGAAGATGGTGTGGAATCGCACCACTCATCTCTGGAACGAGAGTGAAAAGGTCATCCACCAGCGTACCAACACGGTGCCCTTTGACCTGGTGTCCCACGACGAGGCTGTGGCAGCCACCATTCGGGTCATCCGTCCCCTGGACTCCTCGGAGCTGGACCTGGAGACCACCTATGAGAACTTTCACCCCACTGCCCAGTCCCTGACCAACGTCATCGGCCACTTCATCAGCGGGGAGCGCCCTAAAgGTATCCACGAGATGGAGGAGATGTTACGTCTGGGGGAGAGTGTGACCGGGGTCGGGGAGCTGGTGCTGGACAACAACCTGGTGAAGCTCCAGCCTCCCAAGCAGGGCCTGAGGTACTTCCTCAGCCGACTGGACTATGACTCCCTGGTGGAGAAGCAGCAGAGCACAGTCAGGTTCTGGAGGATCCTGACTATGATGTTTGGTGTAGTTGCTTCCACAACGCTCTTCTTCATCCTGTGGAAGCAGTGGGCTTACCATacacagaggaggaagaagaagaatgtTCTGGAGGAATTCAAGGAGCAGCAGAGGAAGCGGTTAAGGGAGCTGAATGTGGAGGaggccagtgtttcccctagtGCCTGTACAGTGTGTTTGAGCCAGGAGCGTTCCTGTGTGTTCCTGGAGTGTGGGCATGTCTGTGCTTGTGACCGGTGCTACCAGGCACTGCCAAAGCCAAAGAAGTGCCCTATCTGCAGGGCGACGATAGAGAGGGTAGTGCCTCTTTATAACAGGACTGATCTAATGTCACTGAAAAAAGGATTGTCGGCTTATTTTTCTGTTTTCTTTGCTTTGCTTTTAATTGAAAGATCAAGCTGACTTGTAGCTTGATTTGAGTTATGTCAGTTGAAATGAAAACATGTCATATCCAGGATCCTTCTTAGTTGTAGAATCAACTCAGAACTTGAATGTTTTCACCTCAATGTTTCTCCAAAGCACACATCAAAGCGATTTTGAATAAATAAagacaaacaaaataaatatatccTCAACCTATTTTACAAATCTGTTGGCCCTATACTATCCACACACATTTATGTAAATGTTTATGGCTGCCAGGAGAGGGTGATGTCTGCCTTGCATACCTTTTCAACAGGGAAGAAAGAGTACATCGTATTTTATGATTTAGATAAACCATTGCATTTGCTCTAAGCAGAAAAGGCACAGAAATCATGTACAAAATAAAGGTAtttgcaaattaaaaacattcgATAAAGTATCAAGTTTTTTAAGTGACAATCAGTAAGTTATCATAAAAGAAGGAGCAATTCACAATGGTGTTAATAACTTATTCATGAAGTGTTGACTGTTACGGGATGTCCATTGAACCGAGAAAGTAAAGAATAAATACAATATCACGAGCGTGTCGTGACGAGACAAGTGAATGCACCAGGAAAAAGCTACCTCAGTCGGTGACGGATCTTCTGCCAATTCTGCTAGGGATTGTTTTGCATCGCTCTCCTACACTATTTGCATTTCTCTCCATCAGTCTTTTATTCTGTAAATGACTATTCCATCGATAAAATACTCATTTATTCGTAAAGAGGACGGAACATTTTGGATAAAATGTGTTTTATGCAAGCGATATCAtaggctacagtataatgttCAGTTGATTATCAAGTCATCTTTTTCACTGACGTCTTTCAGTATCGATTATTGACTAAGCTTTTATTGTGAAGACATGTCGGAAAGTATTGCCTTACAATGAGAAAAACTCATTATGGTGCTGATGGCGACAGGTCTCCATCACCGGTCTCCTTGCAGGATGCCAACAACTTCTATTGT
>XM_021566076.2
CCAAACTAGCAATTCGATGTGGCTTTATTTAGCTAATCTTGGAATGAAATCAATAGTTTTTAAATATAAAAGTAGCCAGTCTATTAAAATTAGCTTGATGAGAAATATGTGTttacaactagctagctaactacgtCAGTGCAGGGCTAAATTACAGAGCCGGGACCTAACTAGTTATGTTAGAAGATCACAGGATGGATACTAGTGGGAAACCCTCCACAGCCCAATTTCTGCTATTAGCCACCAGCTCAGCACTTACTGCAGTCTTCTACTCTGTGTACTGGAGGAGGACAACAACAGTAGCAAGATTAAAGGGAGCCAAGAAAGTGTCTATTGATCAGGATATGAAGAACATCCTGACAGAAGCACCAGGAAAATGTGTCCCGTACGCTGTTATTGAAGGTGTTGTGAGATCTGTGAAAGAAACCTTGAACAGCCAGTTTGTGGACAACTGCAAAGGGGTCATCGAGAGGTTAACTCTAAAGGAGAAGAAGATGGTGTGGAATCGCACCACTCATCTCTGGAACGAGAGTGAAAAGGTCATCCACCAGCGTACCAACACGGTGCCCTTTGACCTGGTGTCCCACGACGAGGCTGTGGCAGCCACCATTCGGGTCATCCGTCCCCTGGACTCCTCGGAGCTGGACCTGGAGACCACCTATGAGAACTTTCACCCCACTGCCCAGTCCCTGACCAACGTCATCGGCCACTTCATCAGCGGGGAGCGCCCTAAAgGTATCCACGAGATGGAGGAGATGTTACGTCTGGGGGAGAGTGTGACCGGGGTCGGGGAGCTGGTGCTGGACAACAACCTGGTGAAGCTCCAGCCTCCCAAGCAGGGCCTGAGGTACTTCCTCAGCCGACTGGACTATGACTCCCTGGTGGAGAAGCAGCAGAGCACAGTCAGGTTCTGGAGGATCCTGACTATGATGTTTGGTGTAGTTGCTTCCACAACGCTCTTCTTCATCCTGTGGAAGCAGTGGGCTTACCATacacagaggaggaagaagaagaatgtTCTGGAGGAATTCAAGGAGCAGCAGAGGAAGCGGTTAAGGGAGCTGAATGTGGAGGaggccagtgtttcccctagtGCCTGTACAGTGTGTTTGAGCCAGGAGCGTTCCTGTGTGTTCCTGGAGTGTGGGCATGTCTGTGCTTGTGACCGGTGCTACCAGGCACTGCCAAAGCCAAAGAAGTGCCCTATCTGCAGGGCGACGATAGAGAGGGTAGTGCCTCTTTATAACAGCTAATGGACAATGCCATTTGGATGGCCATTGTAAATGGACTGATCTAATGTCACTGAAAAAAGGATTGTCGGCTTATTTTTCTGTTTTCTTTGCTTTGCTTTTAATTGAAAGATCAAGCTGACTTGTAGCTTGATTTGAGTTATGTCAGTTGAAATGAAAACATGTCATATCCAGGATCCTTCTTAGTTGTAGAATCAACTCAGAACTTGAATGTTTTCACCTCAATGTTTCTCCAAAGCACACATCAAAGCGATTTTGAATAAATAAagacaaacaaaataaatatatccTCAACCTATTTTACAAATCTGTTGGCCCTATACTATCCACACACATTTATGTAAATGTTTATGGCTGCCAGGAGAGGGTGATGTCTGCCTTGCATACCTTTTCAACAGGGAAGAAAGAGTACATCGTATTTTATGATTTAGATAAACCATTGCATTTGCTCTAAGCAGAAAAGGCACAGAAATCATGTACAAAATAAAGGTAtttgcaaattaaaaacattcgATAAAGTATCAAGTTTTTTAAGTGACAATCAGTAAGTTATCATAAAAGAAGGAGCAATTCACAATGGTGTTAATAACTTATTCATGAAGTGTTGACTGTTACGGGATGTCCATTGAACCGAGAAAGTAAAGAATAAATACAATATCACGAGCGTGTCGTGACGAGACAAGTGAATGCACCAGGAAAAAGCTACCTCAGTCGGTGACGGATCTTCTGCCAATTCTGCTAGGGATTGTTTTGCATCGCTCTCCTACACTATTTGCATTTCTCTCCATCAGTCTTTTATTCTGTAAATGACTATTCCATCGATAAAATACTCATTTATTCGTAAAGAGGACGGAACATTTTGGATAAAATGTGTTTTATGCAAGCGATATCAtaggctacagtataatgttCAGTTGATTATCAAGTCATCTTTTTCACTGACGTCTTTCAGTATCGATTATTGACTAAGCTTTTATTGTGAAGACATGTCGGAAAGTATTGCCTTACAATGAGAAAAACTCATTATGGTGCTGATGGCGACAGGTCTCCATCACCGGTCTCCTTGCAGGATGCCAACAACTTCTATT

Function

NR:

description
mitochondrial ubiquitin ligase activator of NFKB 1-like isoform X1

GO:

id name namespace
GO:0007005 mitochondrion organization biological_process
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15688 MUL1; E3 ubiquitin-protein ligase MUL1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946983.1 False 2303 mRNA 0.44 6 43822715 43828817
XM_036946984.1 False 2216 mRNA 0.44 6 43822715 43828919
XM_036946985.1 False 2202 mRNA 0.44 6 43822715 43828920
XM_021566076.2 True 2338 mRNA 0.44 5 43822717 43828817

Neighbor

gene id symbol gene type direction distance location
LOC110492074 LOC106567140 coding downstream 75401 43742295 ~ 43747314 (-)
LOC118939539 NA coding downstream 89151 43726575 ~ 43733564 (-)
LOC110491064 cpsf3l coding downstream 103734 43713174 ~ 43718981 (-)
LOC110492072 cenb5 coding downstream 110381 43603093 ~ 43712334 (-)
LOC110492071 LOC106567135 coding downstream 223576 43578536 ~ 43599139 (-)
LOC110491066 LOC106567328 coding upstream 117564 43946484 ~ 43953965 (-)
LOC110492081 LOC106567146 coding upstream 162444 43991364 ~ 43997840 (-)
LOC110492085 ptn12 coding upstream 600956 44429876 ~ 44449494 (-)
LOC110492087 NA coding upstream 632453 44461373 ~ 44465741 (-)
LOC118939541 NA coding upstream 660342 44489262 ~ 44495268 (-)
G1377540 NA non-coding downstream 1243 43821178 ~ 43821472 (-)
G1377554 NA non-coding downstream 12031 43810462 ~ 43810684 (-)
G1377545 NA non-coding downstream 26834 43794732 ~ 43795881 (-)
G1377543 NA non-coding downstream 31018 43791492 ~ 43791697 (-)
G1377535 NA non-coding downstream 48528 43773426 ~ 43774187 (-)
G1377578 NA non-coding upstream 12876 43841796 ~ 43842112 (-)
G1377601 NA non-coding upstream 27385 43856305 ~ 43856525 (-)
G1377605 NA non-coding upstream 29281 43858201 ~ 43858695 (-)
G1378199 NA non-coding upstream 110382 43939302 ~ 43982744 (-)
G1378220 NA non-coding upstream 154020 43982940 ~ 43985022 (-)
G1377482 NA other downstream 129877 43692320 ~ 43692838 (-)
G1376991 NA other downstream 484160 43337162 ~ 43338555 (-)
LOC110492063 LOC106567124 other downstream 598332 43217803 ~ 43243705 (-)
G1376748 NA other downstream 652673 43159512 ~ 43170042 (-)
LOC110491060 LOC106567122 other downstream 698549 43117471 ~ 43124619 (-)
G1378530 NA other upstream 724094 44553014 ~ 44553547 (-)
plxna2 LOC106567158 other upstream 1089093 44621739 ~ 44964691 (-)
slc48a1a LOC106567162 other upstream 1487027 45315947 ~ 45320378 (-)
LOC110492109 LOC106567177 other upstream 1789297 45613938 ~ 45627786 (-)
G1380431 NA other upstream 1876190 45705110 ~ 45705453 (-)

Expression


Co-expression Network