LOC110492081 (LOC106567146)


Basic Information

Item Value
gene id LOC110492081
gene name LOC106567146
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 43991364 ~ 43997840 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566082.2
TAGCTGGTCCCTCCTTCACACTGGATGCAGTCCCAGCAGGTTATCATTTACGGAGGAGAGATAACGTTAGAGAGCTCGGATGATGCTTCAAATTACACCTTTTCCATGCTTTTCGTTCGTAGAAAAGCAGTGACAGAGACATTTTAGATGAATGTGACAGAAGAACAGTTGATCCAACCAGATTCTTGAGACAAAAACACATGGCAAGAAGAACAAGGATGTTTTTGACATTTCCTGGTATAGTGGTTGTCTGTCTGCATCTTCTGGGTGGCTCAATGGAGACAGCCAATGAAGTAGACCCATACAAGATTCTTGGAGTGACCAAAAGTGCAAGTCAAGCTGAAATCAAGAAAGTGTACAAGCGCCTAGTTAGGGAATGGCATCCGGACAAAAACAAAAATGAAGGCGCTGAAGATATGTTCATCAAGATTACCAAATCTTATGAGATATTATCCAATGAGGAGAAGAGAACCAACTATGACCGGTATGGCCAGACTGATGACACCCAGCCGTATGGTCATGGTCACTATGGTCACCGCCACGACCACTTCTACTTCGACGAGTCCTTCTTCCACTTCCCATTCAACAATAAGGGCAACCGGGAGTTTGCCGACAGCAAGTACGCTCTGCACTTCAACCAGTATGTGAATGACGTGGTGCCTGACAGCTATAAGAGACCGTACCTGATCAAAATCACATCCGACTGGTGTTTCAGCTGTATCCACATTGAACCGGTCTGGAAAGAGGTTGTGTTGGAGCTGGAAGCCTTGGGTGTGGGGATTGGTGTGGTGGACGTTGGTTATGAGAGACGTCTGGCCAATCACCTCGGTGCTCACCGCACCCCATCCATACTGGGGGTCATCAACGGGAAAGTGACCTTCTTCCACTACGCTGTGGTGAAGGAGCACCTGAGGCAGTTTGTGGAGGACCTGCTCCCTCAGAGACTGGTTGAGAAGGTTACAGACAGGAACGACTTTCAATTCCTGAACAGCTGGCATGAGCAGAACAAGCCACACGTGCTTCTGTTTGACCAAGTGCCTGTAGTTCCACTCTTGTACAAGCTGACTGCTTTCGCCTATAAGGATTATGTTCAGTTTGGATACGTGGACCAGGGCCTGTCAGAGACCGCGAACCTACTGAAGCAGTTCAACATCAACACCTACGCCCCCACCATGCTGGTCTTTAAGGAGAGTACAGACAAGCCTGCAGACATTATACAGGCTAAAGGGATGAAGAAACAAATCATTGATGAATTTATAACGAACAACAAGTTTCTCCTCGTCCCTCGACTGGTGAACCAGAAACTGTTTGATGAACTTTGCCCTGTGAAGCAGTTCCACCGACGCAGGAAGTACTGTGTTCTACTGATCACTGGTGATGAGGAGTCCTATACCATAGGAAACCAGGCCTTCCTCACATTTGCCTCTACCAACACTCTGGAGGTGGTGAGGTTTGCCTACGTCTACCAAAGACTGCAACAATCACTGTGTGATATTCTGCTGAAGACTAAGGACAGcacacctccaccaccacagGTGTTCATCTTGGAGCGTCGTAACCCAGCAGGGAAGGTCCTGTACAAGGAGGTGGCGGGCGGTTGGAATGGTACTGATGAGGATAAACAACGTCTGTTGGATGAGCTGGAGAGGCTGCAGAAAGACCCCTCCATCCTCAACTACGACGCCATGCTGCCGGAGCTCAACAATGAGTTTGCCTCTATGTTTCTTATTCGATGGATCTACACAGCATATGATTACATTTCTGAAATCCTTGATGATATTCTTCATAATAATTGGCGTGAGATGATGCCCCTCCTGTCGTTGATATTCTCTGCCTTATTCATCCTGTTTGGCACTGTGGTGGTTCAGGCCTTCAGTGACTCCAGTGAAGATGGTAAATCCAAACCGAAGGCAAAAGAAGGAACTAAGGCAGAAAATGGGTCACCGGGTAGCAGCAGCACCTCAAGtcGCCCACCTAAGAAGAACTTTGTGGAGGTGACGGAGCTGACAGACATCACATACACCAGTAACCTGGTGAAGCTGAGACCAGGCCATATGAACGTGGTACTGGTGCTCACTGATGCCACCAAGAATGTCTTACTCAGCAAGTTCGCCAAAGAAGTCTACTCTTTCACCGGGAGCCTGACTCTTCACTTTTCCTTCCTGAACATGGACAAGCACAGTGCATGGATGGAAACACTGTTGGAGTTTGCCCAGGACGCCATGCAGATAGACACCGAAGAGGATGACTGTGCCCGCCACAAGATAGACTACACAGGCTATGTGCTGGCACTCAACGGCCATAAGAAGTACCTCTGCCTCTTCAAGCCTGTCTACACCGGGGAGGAAGGCGGGTCCTCCGAGGAGGAAGGGCCTGGGGGCGCCACTGGGGGAGGGAAGAGGTCTAGGTCCGGGTCCAGGGACGACCACCCACCACGCAGGTCTACGCCCAGGTCCCGCTCCACCGCCACACTGCAGATCCACCACAAACTGGACCGCCTGGGGCTGTGGATGGAGAGGCTTATGGAGGGAACTCTGCCCCGGTACTACATTCCTGGCTGGCCGGGCCTGGACAAGATCACAGGCCCCAAATAGAAATCGTGTCAATTACTTATACTGTACGTTGTGAAAAAATATCCCCAAAAAGATATGCTTGGAAGTTTGAGATGCATTGCATGCACACATCCCAAGTCAGGATACAGGCCTAAATGGACGCGCTCCAAAGCTATCTGTGTTTAAAAGCCAAGACGACGCCGAGGTATCCTCATGGCTGTGttcagaggctactgtatgttttgaGTGATTGCACTAGGACATGGTTTGAAGAAATTACATTCAATAGTGAGGTTGGCTTGGCTCATTGCGACAACTGTACCACATTTATCTGCCGTCATGTTCTGCTGCCTTTTTTTGCACTTGAAATATTTATTTGTTACGGAAGTACTTAGAAAAGTAGCTTCAGTAAAAGAGGGAGGGTGCAGAATATGGTGGATCTCAAAGCAACAACCGTTGAACAGTTCCTAGATTGCTTTCCCTTTCGGATCCCTTCCTCTGCATGCTGTCATTAGTTAGCTACTTAGTTCTAATATCGACTGCTGTTACAACCTCTAGCTGCGCTAACTGAATCACTGTGGTCATAAGTAGACTCCTGCCTTTTTAGAACCGTCATCCATCATTATTCAAATATCTAATCTATCAGATTGTGCTTTGATAttagcttcactgtcccaatGGTGATTGGTCAGTACTGTGAATAGTGATGCATGGCTCTACTAGATCTATTTTCTTCACCATTTTGACCTCActccaaaaaaatatattttattcttgTGCaatatatactgtaactacaatgCCTTCCATTTATCCTGGGCTGCTAATATTTCATGTTCATTCTTATTCATGTAGAAataggctatttaaaaaaaagtctTAACGTTATACTTTAGCTTTTTGTTACATGACCAAGTTTTTTGCATTAGTCTATTTCCCTTTATTTTTTACGTGGAAGACAAgagaaacccgcacactgctcttgctagtgtCACTGTTCTTTATTAGGCTTTACATATCGTCCTcttggccttcgtcagagcttttttAGTTTTACAACAGAACTTGGCCAGTGGCTTCATATAGCAATGAAATAgtgtacagtggcttgtgaaaatattcaccccccttggcatttttcctatcttcttgccttacaacctggatttAAAATAGGTTTTTTGAGGGGTGCtttgtgtcatttgatttacatgcctaccactttgaagatgcaaaatgttttttgtgaaacaaacaagacaaaaaaatggaaaacttgagcatgcataactattcacccccctcccccctccaaagtcaa

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process

KEGG:

id description
K09536 DNAJC16; DnaJ homolog subfamily C member 16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566082.2 True 3873 mRNA 0.46 15 43991364 43997840

Neighbor

gene id symbol gene type direction distance location
LOC110491066 LOC106567328 coding downstream 37399 43946484 ~ 43953965 (-)
LOC110492076 LOC106567144 coding downstream 162444 43822715 ~ 43828920 (-)
LOC110492074 LOC106567140 coding downstream 244050 43742295 ~ 43747314 (-)
LOC118939539 NA coding downstream 257800 43726575 ~ 43733564 (-)
LOC110491064 cpsf3l coding downstream 272383 43713174 ~ 43718981 (-)
LOC110492085 ptn12 coding upstream 432036 44429876 ~ 44449494 (-)
LOC110492087 NA coding upstream 463533 44461373 ~ 44465741 (-)
LOC118939541 NA coding upstream 491422 44489262 ~ 44495268 (-)
LOC110492088 NA coding upstream 540511 44538351 ~ 44540757 (-)
cd34a cd34a coding upstream 562361 44560201 ~ 44596213 (-)
G1378222 NA non-coding downstream 4984 43985786 ~ 43986380 (-)
G1378221 NA non-coding downstream 6015 43985111 ~ 43985349 (-)
G1378220 NA non-coding downstream 6342 43982940 ~ 43985022 (-)
G1378199 NA non-coding downstream 8620 43939302 ~ 43982744 (-)
G1377605 NA non-coding downstream 132669 43858201 ~ 43858695 (-)
G1378317 pss non-coding upstream 191716 44189556 ~ 44190280 (-)
G1378346 NA non-coding upstream 206681 44204521 ~ 44204774 (-)
G1378353 NA non-coding upstream 220748 44218588 ~ 44218850 (-)
G1378355 magi3 non-coding upstream 224918 44222758 ~ 44224006 (-)
G1378356 NA non-coding upstream 226596 44224436 ~ 44224669 (-)
G1377482 NA other downstream 298526 43692320 ~ 43692838 (-)
G1376991 NA other downstream 652809 43337162 ~ 43338555 (-)
LOC110492063 LOC106567124 other downstream 766981 43217803 ~ 43243705 (-)
G1376748 NA other downstream 821322 43159512 ~ 43170042 (-)
LOC110491060 LOC106567122 other downstream 867198 43117471 ~ 43124619 (-)
G1378530 NA other upstream 555174 44553014 ~ 44553547 (-)
plxna2 LOC106567158 other upstream 920173 44621739 ~ 44964691 (-)
slc48a1a LOC106567162 other upstream 1318107 45315947 ~ 45320378 (-)
LOC110492109 LOC106567177 other upstream 1620377 45613938 ~ 45627786 (-)
G1380431 NA other upstream 1707270 45705110 ~ 45705453 (-)

Expression


Co-expression Network