LOC118939541


Basic Information

Item Value
gene id LOC118939541
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 44489262 ~ 44495268 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036532.1
GACTACAAAGTAGGCTTACATGGCAGAAGTAGTGTATATCATGAccctcctggttttgaacCTTGCCTGTCCTGTTGCCATatccacctgcctgaccactctgcctgttctgacctcgagcctgcctatccccttgtactgtatGGACTCGGAGCTGTTCActgaacccctgcctgtcctgaccttgagcctgcctatcgcctgatactgtttggactctgacctggtttataaactctcgcctgtccccgacctgccttttgcctaccccCTTTTGGtgtaataaatatcggagctcaaccatctgcctcctgtgtctgcatttgggtctcgccttgtgccgtTACACCCACAATGGATGgaagaaatgtcaagttatgtatcacTAGATTGTACTTATTACAAGACTAAGGGTATACTGTGGAACTTTCATAAGGTCTGGATGCCATATGGAATACAGTCGAcaaaaggagtctgtattgaaaacatgcccacgtCATGGGAGATACCTATTAGGCAATCCCTAGCTGCTGTGCTGCTCAGTCCTAGTCTTGGGGGTCTGCCGTACTGTTGGTTGACACTCTGGTCTTGGCCTTACACACCTGAAACCAACATTGAATGTTGGTTTGGTGTGTTGGGTTGGTGCGCTGCGTTGGTGTGTTGGGTTGGTGCGCTGCGTTGGTGTGTTGGGTTGGTGCGCTGCAGGGACGTAGACCCTTAGGGGCAGGACAATGGGACCCAGCTACATTGTGTGCAAGCAAAACATATATGAATTATATGGAGGGTgtactgtttctgtgtgttaatgtgtatgtgtttttttattaaaaaaactttttttccAAACCTTTCcttgagaaaaaaagaaaaagataAAAGGAAGTTGTGTTGGGGCGTGCAGTCGGCTCGGGCTGGTTTAATAAAGAATCTTTATACTTCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036532.1 True 940 mRNA 0.47 2 44489262 44495268

Neighbor

gene id symbol gene type direction distance location
LOC110492087 NA coding downstream 23521 44461373 ~ 44465741 (-)
LOC110492085 ptn12 coding downstream 39768 44429876 ~ 44449494 (-)
LOC110492081 LOC106567146 coding downstream 491422 43991364 ~ 43997840 (-)
LOC110491066 LOC106567328 coding downstream 535297 43946484 ~ 43953965 (-)
LOC110492076 LOC106567144 coding downstream 660342 43822715 ~ 43828920 (-)
LOC110492088 NA coding upstream 43083 44538351 ~ 44540757 (-)
cd34a cd34a coding upstream 64933 44560201 ~ 44596213 (-)
plxna2 LOC106567158 coding upstream 126471 44621739 ~ 44964691 (-)
LOC110492092 LOC106567333 coding upstream 808452 45303720 ~ 45307537 (-)
LOC110492093 LOC106567160 coding upstream 813078 45308346 ~ 45315784 (-)
G1378468 NA non-coding downstream 21637 44385186 ~ 44467625 (-)
G1378486 NA non-coding downstream 99648 44388829 ~ 44389614 (-)
G1378481 NA non-coding downstream 112753 44376178 ~ 44376509 (-)
G1378476 NA non-coding downstream 116952 44372048 ~ 44372310 (-)
G1378475 NA non-coding downstream 117951 44371083 ~ 44371311 (-)
G1378454 NA non-coding upstream 18285 44513553 ~ 44515545 (-)
G1378470 NA non-coding upstream 26318 44521586 ~ 44522883 (-)
G1378469 NA non-coding upstream 39106 44534374 ~ 44535502 (-)
G1378466 NA non-coding upstream 40352 44535620 ~ 44536570 (-)
G1377482 NA other downstream 796424 43692320 ~ 43692838 (-)
G1376991 NA other downstream 1150707 43337162 ~ 43338555 (-)
LOC110492063 LOC106567124 other downstream 1264879 43217803 ~ 43243705 (-)
G1376748 NA other downstream 1319220 43159512 ~ 43170042 (-)
LOC110491060 LOC106567122 other downstream 1365096 43117471 ~ 43124619 (-)
G1378530 NA other upstream 57746 44553014 ~ 44553547 (-)
slc48a1a LOC106567162 other upstream 820679 45315947 ~ 45320378 (-)
LOC110492109 LOC106567177 other upstream 1122949 45613938 ~ 45627786 (-)
G1380431 NA other upstream 1209842 45705110 ~ 45705453 (-)

Expression


Co-expression Network