LOC110492088


Basic Information

Item Value
gene id LOC110492088
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 44538351 ~ 44540757 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468948.2
CAGGGGTGTGTGAGAGGGCGTGGTTTGAATGAGGCGCTCTGGAAAATTCGGTGGATTAACTGGTTTTAAAAGGAAACGTCTTGAAATAAAGGATCCAGGGACCAATGCCAGGATCATGTGTTGTTGTCCAGAATGTATACAGGACTTGCTATAGGTGCGACATAGGTGAGTCCTTTCTGGCCAAGAGGGATGAAGCATGGATCATCATCACACACCACCATGGCTGCAGCCTACTGTCATTGTCAACGTCCCAGGTTATCACAgTAGACCAAAGGTGACACGGCGTGGGCAGTCCAAATGATAGGGATGGATGGCGAAGGCTGTTTCCCATACAGCAACTACAACAGCAGCCATCCAGACCAGGGCACGTACCTTCCCTGAGAGGGAGATTAGGGTTTAGGAAGTGGAGCAGGCCTTTGAGATGACATGGCTAAAATGAACCCCGTGCCTAGTGAATGCGTGGTATAAATAGCTGACGGGAAGATCTCCAGGTTGCATGCATCATTAGTGACTGCACATCACTATAAACACTGTCAACAAACATTGCCCGGCCATTGTAAACATGACACAGATTGGGATTTTTCTTGATATGATGACTAGTAGTGGTGTACAAGTCAACTATGTCATGCTTACTGGGCTTTCGATGTACACAAAGATTTACAGTAAAGGCAACAATATGAAGCATA
>TU1574657
GGAAAATTCGGTGGATTAACTGGTTTTAAAAGGAAACGTCTTGAAATAAAGGATCCAGGGACCAATGCCAGGATCATGTGTTGTTGTCCAGAATGTATACAGGACTTGCTATAGGTGCGACATAGGTGAGTCCTTTCTGGCCAAGAGGGATGAAGCATGGATCATCATCACACACCACCATGGCTGCAGCCTACTGTCATTGTCAACGTCCCAGGTTATCACAgTAGACCAAAGGTGACACGGCGTGGGCAGTCCAAATGATAGGGATGGATGGCGAAGGCTGTTTCCCATACAGCAACTACAACAGCAGCCATCCAGACCAGGGCACGTACCTTCCCTGAGAGGGAGATTAGGGTTTAGGAAGTGGAGCAGGCCTTTGAGATGACATGGCTAAAATGAACCCCGTGCCTAGTGAATGCGTGGTATAAATAGCTGACGGGAAGATCTCCAGGTTGCATGCATCATTAGTGACTGCACATCACTATAAACACTGTCAACAAACATTGCCCGGCCATTGTAAACATGACACAGATTGGGATTTTTCTTGATATGATGACTAGTAGTGGTGTACAAGTCAACTATGTCATGCTTACTGGGCTTTCGATGTACACAAAGATTTACAGTAAAGGCAACAATATGAAGCA
>TU1574658
GGAAAATTCGGTGGATTAACTGGTTTTAAAAGGAAACGTCTTGAAATAAAGGATCCAGGGACCAATGCCAGGATCATGTGTTGTTGTCCAGAATGTATACAGGACTTGCTATAGGTGCGACATAGGTGAGTCCTTTCTGGCCAAGAGGGATGAAGCATGGATCATCATCACACACCACCATGGCTGCAGCCTACTGTCATTGTCAACGTCCCAGGTTATCACAgACCAAAGGTGACACGGCGTGGGCAGTCCAAATGATAGGGATGGATGGCGAAGGCTGTTTCCCATACAGCAACTACAACAGCAGCCATCCAGACCAGGGCACGTACCTTCCCTGAGAGGGAGATTAGGGTTTAGGAAGTGGAGCAGGCCTTTGAGATGACATGGCTAAAATGAACCCCGTGCCTAGTGAATGCGTGGTATAAATAGCTGACGGGAAGATCTCCAGGTTGCATGCATCATTAGTGACTGCACATCACTATAAACACTGTCAACAAACATTGCCCGGCCATTGTAAACATGACACAGATTGGGATTTTTCTTGATATGATGACTAGTAGTGGTGTACAAGTCAACTATGTCATGCTTACTGGGCTTTCGATGTACACAAAGATTTACAGTAAAGGCAACAATATGAAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468948.2 False 686 mRNA 0.47 3 44538351 44540757
TU1574657 False 644 lncRNA 0.46 3 44538353 44540717
TU1574658 True 641 lncRNA 0.46 3 44538353 44540717

Neighbor

gene id symbol gene type direction distance location
LOC118939541 NA coding downstream 43083 44489262 ~ 44495268 (-)
LOC110492087 NA coding downstream 72610 44461373 ~ 44465741 (-)
LOC110492085 ptn12 coding downstream 88857 44429876 ~ 44449494 (-)
LOC110492081 LOC106567146 coding downstream 540511 43991364 ~ 43997840 (-)
LOC110491066 LOC106567328 coding downstream 584386 43946484 ~ 43953965 (-)
cd34a cd34a coding upstream 19444 44560201 ~ 44596213 (-)
plxna2 LOC106567158 coding upstream 80982 44621739 ~ 44964691 (-)
LOC110492092 LOC106567333 coding upstream 762963 45303720 ~ 45307537 (-)
LOC110492093 LOC106567160 coding upstream 767589 45308346 ~ 45315784 (-)
slc48a1a LOC106567162 coding upstream 775191 45315947 ~ 45320378 (-)
G1378466 NA non-coding downstream 1781 44535620 ~ 44536570 (-)
G1378469 NA non-coding downstream 2849 44534374 ~ 44535502 (-)
G1378470 NA non-coding downstream 15468 44521586 ~ 44522883 (-)
G1378454 NA non-coding downstream 22806 44513553 ~ 44515545 (-)
G1378468 NA non-coding downstream 70726 44385186 ~ 44467625 (-)
G1378523 NA non-coding upstream 3646 44544403 ~ 44544729 (-)
G1378556 NA non-coding upstream 59516 44600273 ~ 44600522 (-)
G1378563 NA non-coding upstream 72419 44613176 ~ 44613385 (-)
G1378566 NA non-coding upstream 77290 44618047 ~ 44618262 (-)
G1378568 NA non-coding upstream 78313 44619070 ~ 44619293 (-)
G1377482 NA other downstream 845513 43692320 ~ 43692838 (-)
G1376991 NA other downstream 1199796 43337162 ~ 43338555 (-)
LOC110492063 LOC106567124 other downstream 1313968 43217803 ~ 43243705 (-)
G1376748 NA other downstream 1368309 43159512 ~ 43170042 (-)
LOC110491060 LOC106567122 other downstream 1414185 43117471 ~ 43124619 (-)
G1378530 NA other upstream 12257 44553014 ~ 44553547 (-)
LOC110492109 LOC106567177 other upstream 1077460 45613938 ~ 45627786 (-)
G1380431 NA other upstream 1164353 45705110 ~ 45705453 (-)

Expression


Co-expression Network