LOC110492092 (LOC106567333)


Basic Information

Item Value
gene id LOC110492092
gene name LOC106567333
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 45303720 ~ 45307537 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566099.2
ACAACCTGAGCGATAATTTTCCTAGATCCTACTTTCTTGCCCTGTCAGATGTAAGTTCCCACCTGGATGTCAGCACAACATGAATGTGGCAGCAGTTTTTGTTTGGTTCAGCCTGGTGGTCACTAAAGCCATTTGTACTCTGGAAGAGTACCGTCTGGTGTGCTATGTGAACAGCAGGAACCAGCACCATCCTGACATGCTTGCCTTCAGCCTGGACATGGCTGACCCATTCCTCTGCACTCATATCATCATGGCCTACATGGACCTGGACCAGGACTATCACATCACACCCTTCACACAGGAGGACAAGACCCTCTGCAACTCCCTCAACATGCTcaaagagggGAACCCAGATCTGAAAACTCTGCTTGCTGTTGGGGGAAGGAACTCTACGGACACCAGGCTCCTAAAAATGTCCTCTGACAACACCAGGAGGAAGACGTTTGTCCAGTCTGTTCTGAAACACCTGAGGCAGGAGGGCTTTGATGGACTGGATGTGGTGTGGCAACCTCGCTCTGCTTCTAATGTAGCACAGGGGGGGAAACATATATTCACTAATCTGCTCAAGGAGCTGCGTGGAGGAATTCAGGAGGAGGCTCGTGTCTCAGGGATTGAGGCCCTGCTCCTCTCCACAGCAGTGTCAGGCCTGGAGGACTATGCCAGAGAGGCCTACGATGCACATTCCTTCCCCCAGTATGTTGACTTCATCtccttggtgacctctgacctccaTGGGCCACTGGAGGGAATGTCAGGTCACATCAGTCCATTGTTCAGCCGGAAGCATCCAGCTATGGACACACCTCAGAGAGAAGTACTCACTACAAACCAAGTGCAGTACTGGCTCTCTCAGGGAGTGGATTCCCAGAAGCTGACTCTGGGGTTCCCTGCCTACTCACCTGTTCCCCGAATCCTGAGGAACGAGATTAATTCTGACAAGGAAGACACAGAGCTACAAGAGGACGCAGCGGAATATACTGAGACTGATACTACTGTACGTGTTATGGCCTACCATGAGGTGTGTCAGTACCTCAAAAGTGGGGCGGTGGTGACATTTGATAAGAGCAAGAAGCTGATACAGGCACATGAATACGATCACTGGCTGAACTTTGAATATATACATATCCTGAGGGAGAAGATGAGAGCGCTGCAGCGTCAGGAGCTGGGTGGAGCCATGGTGTGGTCTCTGGATCTGGACGACTTCACGGGGACGCTGTGTGGCAAAGGTCGCTTCCCGTTCACCAGACTGCTCAAAGCGTTGCTTCTCAGGGATAAGGGGCCCCGACATCATAAACGCCACCACCGCTCACGCCACCGTCATCATCATCGCCATCCACATCGTCATGGTGGTTTCCTTTCCCGTGACAGCCATCGCAATGGTTACCATGTCCATTGTCACCGTCACCTTGACCGCCACAACATTTAATCACACAGTGGAGTGTGACTGTAACGTAACTCACTACACTGGCAAGACTCAACATACCatccctggggcggcaggtagtgtagtggtcagagcgttggactagtaaccgaagggttgcaagatcgaatccccgagccgacgaggtagaaatctgtcgctctgcccctgaacaaggcagtaacccactgttcctaggaaaataagaatttgttcttaactgacttgcctagttaaaggttaaatttttttttttttaaatccctgcAAGAATATACTAGCATATGTTTTTTTATATGGTAGATCAGGTTGGACTGTTTGTTGGCTCTGTGAGTGATTTCTGTCATGGTATAGTAGAGATGAGGCTCTAGATTTATCTTCATAACTTGCACTCTGTCCTCTATGGTGGAATACTATGCGTTAATTGTCTTGTTTTATGACAAATTTTACTGCTTTACAAATAATAAAATGAATGGCTCCATTTCCATGGCCTAATATAAA
>XM_021566098.2
ccagttggtggcggtaatgcaccttaaagttggttgcaaCTGACATACaaagtccacagaagaagaaggtGCGACGGTTTGAAGAAGTGGTTGGTCAATAGGCCCATGTTGTGATTAGTAGGACTAGCACAGTGTATTTGTTTCTCCTGGAGGTGAACATGTAGCAATGTTTTTCCTAATTTGAAGTGAGACTTTCGCCGGTGTTATCCAGACACGGGAGGACAGATCCTACTTTCTTGCCCTGTCAGATGTAAGTTCCCACCTGGATGTCAGCACAACATGAATGTGGCAGCAGTTTTTGTTTGGTTCAGCCTGGTGGTCACTAAAGCCATTTGTACTCTGGAAGAGTACCGTCTGGTGTGCTATGTGAACAGCAGGAACCAGCACCATCCTGACATGCTTGCCTTCAGCCTGGACATGGCTGACCCATTCCTCTGCACTCATATCATCATGGCCTACATGGACCTGGACCAGGACTATCACATCACACCCTTCACACAGGAGGACAAGACCCTCTGCAACTCCCTCAACATGCTcaaagagggGAACCCAGATCTGAAAACTCTGCTTGCTGTTGGGGGAAGGAACTCTACGGACACCAGGCTCCTAAAAATGTCCTCTGACAACACCAGGAGGAAGACGTTTGTCCAGTCTGTTCTGAAACACCTGAGGCAGGAGGGCTTTGATGGACTGGATGTGGTGTGGCAACCTCGCTCTGCTTCTAATGTAGCACAGGGGGGGAAACATATATTCACTAATCTGCTCAAGGAGCTGCGTGGAGGAATTCAGGAGGAGGCTCGTGTCTCAGGGATTGAGGCCCTGCTCCTCTCCACAGCAGTGTCAGGCCTGGAGGACTATGCCAGAGAGGCCTACGATGCACATTCCTTCCCCCAGTATGTTGACTTCATCtccttggtgacctctgacctccaTGGGCCACTGGAGGGAATGTCAGGTCACATCAGTCCATTGTTCAGCCGGAAGCATCCAGCTATGGACACACCTCAGAGAGAAGTACTCACTACAAACCAAGTGCAGTACTGGCTCTCTCAGGGAGTGGATTCCCAGAAGCTGACTCTGGGGTTCCCTGCCTACTCACCTGTTCCCCGAATCCTGAGGAACGAGATTAATTCTGACAAGGAAGACACAGAGCTACAAGAGGACGCAGCGGAATATACTGAGACTGATACTACTGTACGTGTTATGGCCTACCATGAGGTGTGTCAGTACCTCAAAAGTGGGGCGGTGGTGACATTTGATAAGAGCAAGAAGCTGATACAGGCACATGAATACGATCACTGGCTGAACTTTGAATATATACATATCCTGAGGGAGAAGATGAGAGCGCTGCAGCGTCAGGAGCTGGGTGGAGCCATGGTGTGGTCTCTGGATCTGGACGACTTCACGGGGACGCTGTGTGGCAAAGGTCGCTTCCCGTTCACCAGACTGCTCAAAGCGTTGCTTCTCAGGGATAAGGGGCCCCGACATCATAAACGCCACCACCGCTCACGCCACCGTCATCATCATCGCCATCCACATCGTCATGGTGGTTTCCTTTCCCGTGACAGCCATCGCAATGGTTACCATGTCCATTGTCACCGTCACCTTGACCGCCACAACATTTAATCACACAGTGGAGTGTGACTGTAACGTAACTCACTACACTGGCAAGACTCAACATACCatccctggggcggcaggtagtgtagtggtcagagcgttggactagtaaccgaagggttgcaagatcgaatccccgagccgacgaggtagaaatctgtcgctctgcccctgaacaaggcagtaacccactgttcctaggaaaataagaatttgttcttaactgacttgcctagttaaaggttaaatttttttttttttaaatccctgcAAGAATATACTAGCATATGTTTTTTTATATGGTAGATCAGGTTGGACTGTTTGTTGGCTCTGTGAGTGATTTCTGTCATGGTATAGTAGAGATGAGGCTCTAGATTTATCTTCATAACTTGCACTCTGTCCTCTATGGTGGAATACTATGCGTTAATTGTCTTGTTTTATGACAAATTTTACTGCTTTACAAATAATAAAATGAATGGCTCCATTTCCATGGCCTAATATAAA
>XM_021566100.2
ccagttggtggcggtaatgcaccttaaagttggttgcaaCTGACATACaaagtccacagaagaagaaggtGCGACGGTTTGAAGAAGTGGTTGGTCAATAGGCCCATGTTGTGATTAGTAGGACTAGCACAGTGTATTTGTTTCTCCTGGAGGTGAACATGTAGCAATGTTTTTCCTAATTTGAAGTGAGACTTTCGCCGGTGTTATCCAGACACGGGAGGACAGATGTAAGTTCCCACCTGGATGTCAGCACAACATGAATGTGGCAGCAGTTTTTGTTTGGTTCAGCCTGGTGGTCACTAAAGCCATTTGTACTCTGGAAGAGTACCGTCTGGTGTGCTATGTGAACAGCAGGAACCAGCACCATCCTGACATGCTTGCCTTCAGCCTGGACATGGCTGACCCATTCCTCTGCACTCATATCATCATGGCCTACATGGACCTGGACCAGGACTATCACATCACACCCTTCACACAGGAGGACAAGACCCTCTGCAACTCCCTCAACATGCTcaaagagggGAACCCAGATCTGAAAACTCTGCTTGCTGTTGGGGGAAGGAACTCTACGGACACCAGGCTCCTAAAAATGTCCTCTGACAACACCAGGAGGAAGACGTTTGTCCAGTCTGTTCTGAAACACCTGAGGCAGGAGGGCTTTGATGGACTGGATGTGGTGTGGCAACCTCGCTCTGCTTCTAATGTAGCACAGGGGGGGAAACATATATTCACTAATCTGCTCAAGGAGCTGCGTGGAGGAATTCAGGAGGAGGCTCGTGTCTCAGGGATTGAGGCCCTGCTCCTCTCCACAGCAGTGTCAGGCCTGGAGGACTATGCCAGAGAGGCCTACGATGCACATTCCTTCCCCCAGTATGTTGACTTCATCtccttggtgacctctgacctccaTGGGCCACTGGAGGGAATGTCAGGTCACATCAGTCCATTGTTCAGCCGGAAGCATCCAGCTATGGACACACCTCAGAGAGAAGTACTCACTACAAACCAAGTGCAGTACTGGCTCTCTCAGGGAGTGGATTCCCAGAAGCTGACTCTGGGGTTCCCTGCCTACTCACCTGTTCCCCGAATCCTGAGGAACGAGATTAATTCTGACAAGGAAGACACAGAGCTACAAGAGGACGCAGCGGAATATACTGAGACTGATACTACTGTACGTGTTATGGCCTACCATGAGGTGTGTCAGTACCTCAAAAGTGGGGCGGTGGTGACATTTGATAAGAGCAAGAAGCTGATACAGGCACATGAATACGATCACTGGCTGAACTTTGAATATATACATATCCTGAGGGAGAAGATGAGAGCGCTGCAGCGTCAGGAGCTGGGTGGAGCCATGGTGTGGTCTCTGGATCTGGACGACTTCACGGGGACGCTGTGTGGCAAAGGTCGCTTCCCGTTCACCAGACTGCTCAAAGCGTTGCTTCTCAGGGATAAGGGGCCCCGACATCATAAACGCCACCACCGCTCACGCCACCGTCATCATCATCGCCATCCACATCGTCATGGTGGTTTCCTTTCCCGTGACAGCCATCGCAATGGTTACCATGTCCATTGTCACCGTCACCTTGACCGCCACAACATTTAATCACACAGTGGAGTGTGACTGTAACGTAACTCACTACACTGGCAAGACTCAACATACCatccctggggcggcaggtagtgtagtggtcagagcgttggactagtaaccgaagggttgcaagatcgaatccccgagccgacgaggtagaaatctgtcgctctgcccctgaacaaggcagtaacccactgttcctaggaaaataagaatttgttcttaactgacttgcctagttaaaggttaaatttttttttttttaaatccctgcAAGAATATACTAGCATATGTTTTTTTATATGGTAGATCAGGTTGGACTGTTTGTTGGCTCTGTGAGTGATTTCTGTCATGGTATAGTAGAGATGAGGCTCTAGATTTATCTTCATAACTTGCACTCTGTCCTCTATGGTGGAATACTATGCGTTAATTGTCTTGTTTTATGACAAATTTTACTGCTTTACAAATAATAAAATGAATGGCTCCATTTCCATGGCCTAATATAAA
>XM_021566102.2
tccagtccagttggtggcggtaatgcaccttaaagttggttgcaaCTGACATACaaagtccacagaagaagaaggtGCGACGGTTTGAAGAAGTGGTTGGTCAATAGGCCCATGTTGTGATTAGTAGGACTAGCACAGTGTATTTGTTTCTCCTGGAGGTGAACATGTAGCAATGTTTTTCCTAATTTGAAGTGAGACTTTCGCCGGTGTTATCCAGACACGGGAGGACAGATCCTACTTTCTTGCCCTGTCAGATGTAAGTTCCCACCTGGATGTCAGCACAACATGAATGTGGCAGCAGTTTTTGTTTGGTTCAGCCTGGTGGTCACTAAAGCCATTTGTACTCTGGAAGAGTACCGTCTGGTGTGCTATGTGAACAGCAGGAACCAGCACCATCCTGACATGCTTGCCTTCAGCCTGGACATGGCTGACCCATTCCTCTGCACTCATATCATCATGGCCTACATGGACCTGGACCAGGACTATCACATCACACCCTTCACACAGGAGGACAAGACCCTCTGCAACTCCCTCAACATGCTcaaagagggGAACCCAGATCTGAAAACTCTGCTTGCTGTTGGGGGAAGGAACTCTACGGACACCAGGAGGAAGACGTTTGTCCAGTCTGTTCTGAAACACCTGAGGCAGGAGGGCTTTGATGGACTGGATGTGGTGTGGCAACCTCGCTCTGCTTCTAATGTAGCACAGGGGGGGAAACATATATTCACTAATCTGCTCAAGGAGCTGCGTGGAGGAATTCAGGAGGAGGCTCGTGTCTCAGGGATTGAGGCCCTGCTCCTCTCCACAGCAGTGTCAGGCCTGGAGGACTATGCCAGAGAGGCCTACGATGCACATTCCTTCCCCCAGTATGTTGACTTCATCtccttggtgacctctgacctccaTGGGCCACTGGAGGGAATGTCAGGTCACATCAGTCCATTGTTCAGCCGGAAGCATCCAGCTATGGACACACCTCAGAGAGAAGTACTCACTACAAACCAAGTGCAGTACTGGCTCTCTCAGGGAGTGGATTCCCAGAAGCTGACTCTGGGGTTCCCTGCCTACTCACCTGTTCCCCGAATCCTGAGGAACGAGATTAATTCTGACAAGGAAGACACAGAGCTACAAGAGGACGCAGCGGAATATACTGAGACTGATACTACTGTACGTGTTATGGCCTACCATGAGGTGTGTCAGTACCTCAAAAGTGGGGCGGTGGTGACATTTGATAAGAGCAAGAAGCTGATACAGGCACATGAATACGATCACTGGCTGAACTTTGAATATATACATATCCTGAGGGAGAAGATGAGAGCGCTGCAGCGTCAGGAGCTGGGTGGAGCCATGGTGTGGTCTCTGGATCTGGACGACTTCACGGGGACGCTGTGTGGCAAAGGTCGCTTCCCGTTCACCAGACTGCTCAAAGCGTTGCTTCTCAGGGATAAGGGGCCCCGACATCATAAACGCCACCACCGCTCACGCCACCGTCATCATCATCGCCATCCACATCGTCATGGTGGTTTCCTTTCCCGTGACAGCCATCGCAATGGTTACCATGTCCATTGTCACCGTCACCTTGACCGCCACAACATTTAATCACACAGTGGAGTGTGACTGTAACGTAACTCACTACACTGGCAAGACTCAACATACCatccctggggcggcaggtagtgtagtggtcagagcgttggactagtaaccgaagggttgcaagatcgaatccccgagccgacgaggtagaaatctgtcgctctgcccctgaacaaggcagtaacccactgttcctaggaaaataagaatttgttcttaactgacttgcctagttaaaggttaaatttttttttttttaaatccctgcAAGAATATACTAGCATATGTTTTTTTATATGGTAGATCAGGTTGGACTGTTTGTTGGCTCTGTGAGTGATTTCTGTCATGGTATAGTAGAGATGAGGCTCTAGATTTATCTTCATAACTTGCACTCTGTCCTCTATGGTGGAATACTATGCGTTAATTGTCTTGTTTTATGACAAATTTTACTGCTTTACAAATAATAAAATGAATGGCTCCATTTCCATGGCCTAATATAAA
>XM_021566101.2
cactccagtccagttggtggcggtaatgcaccttaaagttggttgcaaCTGACATACaaagtccacagaagaagaaggtGCGACGGTTTGAAGAAGTGGTTGGTCAATAGGCCCATGTTGTGATTAGTAGGACTAGCACAGTGTATTTGTTTCTCCTGGAGGTGAACATGTAGCAATGTTTTTCCTAATTTGAAGTGAGACTTTCGCCGGTGTTATCCAGACACGGGAGGACAGATCCTACTTTCTTGCCCTGTCAGATGTAAGTTCCCACCTGGATGTCAGCACAACATGAATGTGGCAGCAGTTTTTGTTTGGTTCAGCCTGGTGGTCACTAAAGCCATTTGTACTCTGGAAGAGTACCGTCTGGTGTGCTATGTGAACAGCAGGAACCAGCACCATCCTGACATGCTTGCCTTCAGCCTGGACATGGCTGACCCATTCCTCTGCACTCATATCATCATGGCCTACATGGACCTGGACCAGGACTATCACATCACACCCTTCACACAGGAGGACAAGACCCTCTGCAACTCCCTCAACATGCTcaaagagggGAACCCAGATCTGAAAACTCTGCTTGCTGTTGGGGGAAGGAACTCTACGGACACCAGGCTCCTAAAAATGTCCTCTGACAACACCAGGAGGAAGACGTTTGTCCAGTCTGTTCTGAAACACCTGAGGCAGGAGGGCTTTGATGGACTGGATGTGGTGTGGCAACCTCGCTCTGCTTCTAATGTAGCACAGGGGGGGAAACATATATTCACTAATCTGCTCAAGGAGCTGCGTGGAGGAATTCAGGAGGAGGCTCGTGTCTCAGGGATTGAGGCCCTGCTCCTCTCCACAGCAGTGTCAGGCCTGGAGGACTATGCCAGAGAGGCCTACGATGCACATTCCTTCCCCCAGTATGTTGACTTCATCtccttggtgacctctgacctccaTGGGCCACTGGAGGGAATGTCAGGTCACATCAGTCCATTGTTCAGCCGGAAGCATCCAGCTATGGACACACCTCAGAGAGAAGTACTCACTACAAACCAAGTGCAGTACTGGCTCTCTCAGGGAGTGGATTCCCAGAAGCTGACTCTGGGGTTCCCTGCCTACTCACCTGTTCCCCGAATCCTGAGGAACGAGATTAATTCTGACAAGGAAGACACAGAGCTACAAGAGGACGCAGCGGAATATACTGAGACTGATACTACTGTGTGTCAGTACCTCAAAAGTGGGGCGGTGGTGACATTTGATAAGAGCAAGAAGCTGATACAGGCACATGAATACGATCACTGGCTGAACTTTGAATATATACATATCCTGAGGGAGAAGATGAGAGCGCTGCAGCGTCAGGAGCTGGGTGGAGCCATGGTGTGGTCTCTGGATCTGGACGACTTCACGGGGACGCTGTGTGGCAAAGGTCGCTTCCCGTTCACCAGACTGCTCAAAGCGTTGCTTCTCAGGGATAAGGGGCCCCGACATCATAAACGCCACCACCGCTCACGCCACCGTCATCATCATCGCCATCCACATCGTCATGGTGGTTTCCTTTCCCGTGACAGCCATCGCAATGGTTACCATGTCCATTGTCACCGTCACCTTGACCGCCACAACATTTAATCACACAGTGGAGTGTGACTGTAACGTAACTCACTACACTGGCAAGACTCAACATACCatccctggggcggcaggtagtgtagtggtcagagcgttggactagtaaccgaagggttgcaagatcgaatccccgagccgacgaggtagaaatctgtcgctctgcccctgaacaaggcagtaacccactgttcctaggaaaataagaatttgttcttaactgacttgcctagttaaaggttaaatttttttttttttaaatccctgcAAGAATATACTAGCATATGTTTTTTTATATGGTAGATCAGGTTGGACTGTTTGTTGGCTCTGTGAGTGATTTCTGTCATGGTATAGTAGAGATGAGGCTCTAGATTTATCTTCATAACTTGCACTCTGTCCTCTATGGTGGAATACTATGCGTTAATTGTCTTGTTTTATGACAAATTTTACTGCTTTACAAATAATAAAATGAATGGCTCCATTTCCATGGCCTAATATAAA

Function

NR:

description
chitinase-like protein 4 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566099.2 False 1924 mRNA 0.49 9 45303720 45306828
XM_021566098.2 False 2124 mRNA 0.49 10 45303720 45307528
XM_021566100.2 False 2101 mRNA 0.49 10 45303720 45307528
XM_021566102.2 False 2100 mRNA 0.49 10 45303720 45307534
XM_021566101.2 True 2109 mRNA 0.49 10 45303720 45307537

Neighbor

gene id symbol gene type direction distance location
plxna2 LOC106567158 coding downstream 339029 44621739 ~ 44964691 (-)
cd34a cd34a coding downstream 707507 44560201 ~ 44596213 (-)
LOC110492088 NA coding downstream 762963 44538351 ~ 44540757 (-)
LOC118939541 NA coding downstream 808452 44489262 ~ 44495268 (-)
LOC110492087 NA coding downstream 837979 44461373 ~ 44465741 (-)
LOC110492093 LOC106567160 coding upstream 809 45308346 ~ 45315784 (-)
slc48a1a LOC106567162 coding upstream 8411 45315947 ~ 45320378 (-)
itga5 LOC106567163 coding upstream 70728 45378265 ~ 45432804 (-)
LOC118939605 NA coding upstream 148025 45455562 ~ 45455616 (-)
csrnp2 LOC106567166 coding upstream 186376 45493913 ~ 45505194 (-)
G1379089 NA non-coding downstream 66720 45236754 ~ 45237000 (-)
G1379076 NA non-coding downstream 76104 45227395 ~ 45227616 (-)
G1379060 NA non-coding downstream 90612 45212762 ~ 45213108 (-)
G1379017 NA non-coding downstream 121717 45181779 ~ 45182003 (-)
G1379007 NA non-coding downstream 126108 45177192 ~ 45177612 (-)
G1380277 NA non-coding upstream 81017 45388554 ~ 45388866 (-)
G1380287 NA non-coding upstream 95280 45402817 ~ 45403068 (-)
pou6f1 LOC106567168 non-coding upstream 218452 45525987 ~ 45536632 (-)
G1380361 NA non-coding upstream 237473 45545010 ~ 45545226 (-)
G1380386 NA non-coding upstream 296340 45603877 ~ 45604864 (-)
G1378530 NA other downstream 750173 44553014 ~ 44553547 (-)
G1377482 NA other downstream 1610882 43692320 ~ 43692838 (-)
G1376991 NA other downstream 1965165 43337162 ~ 43338555 (-)
LOC110492063 LOC106567124 other downstream 2079337 43217803 ~ 43243705 (-)
LOC110492109 LOC106567177 other upstream 310680 45613938 ~ 45627786 (-)
G1380431 NA other upstream 397573 45705110 ~ 45705453 (-)
LOC110492748 ppdpf other upstream 1109023 46416560 ~ 46419996 (-)
LOC110492764 fkb1a other upstream 1291160 46598697 ~ 46601691 (-)

Expression


Co-expression Network