LOC110492093 (LOC106567160)


Basic Information

Item Value
gene id LOC110492093
gene name LOC106567160
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 45308346 ~ 45315784 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566103.2
CTCCTCCCACGGAGAAGGTGTCAGCATAGCCCCAGTATAAAACAAATACTGAGTCTTTTCTGGGGTGTGAAAACTCAAACCAGTGCCATCCGATGGTTCACTCTGACACTACGTGCAGCTGCATGGATACTAGCGTCAATTCTTGGCCTGTCTAACTAtcctctgattggctgaaacCATGCAACAAGAGCGCCCACGCTATGTGATCAACAGGCCAGCCTACTCCCTCCCAGACTTTGATGGGGAGTTTGACAAGAAGAAACGGGCCTTCCCCATAGGAGAGAAAGTGAAGAAATGCTTCAGGTGCTCTGGGTCTCGACTCAAGTCCCTGCTGTTCAGACACCTGCCTATCCTGAGCTGGCTGCCCAAGTACAAGGTGAAGGAGAACCTGCTGTGTGATGTCATTAGCGGGGTCAGCGCAGGCACCATTCAGGTTCCTCAGGGCATGGCGTTTGCTCTGCTGGCTAACCTGCCTCCTGTCAATGGCCTCTACTCCTCCTTCTTTCCTCTCATCCCTTACTTCTTCATGGGCACTGCTCACCAAATGGTCCCAGGTACTTTTGCTGTGCTCAGTATCATGGTGGGAATGGTGTGTCTGAGTCTGGCCCCTGAGTCTGACTTCAGCCACTTCAATGCCACCCTCAATGCTACACTAGTGGACGAGGACAGGATGAACGAGGTTCGACTGGGCATCTCTGGAACACTGGCCTGTCTCACTGCCGTCATCCAGATGGGCCTGGGCCTAATGCAGTTTGGCTTCGTGGCCATCTACTTGTCTGAGTCGTTCATCAGGGGCTTCATGACGGCTGCAGGACTGCAGATCCTCATCTCTGTACTGAAGTACATCTTTGGTATTAAAGTACCTCCCTACAGTGGACCACTTGCCACCATATATACTCTAAAAGATATTTTTTATGGCCTGCCTGACACCAACATAGCCTCGCTGGTCTTTGCTCTGGTCAGTAGTGTGGTACTCATCACAGTGAAGGAGCTGAGTGCACACTTCCGTCACAAACTGCCTTTCCCCATCCCCATGGAGATCATTGTTGTGGTAGTGGCCACAGCCATATCAGGTCCCCTGGACCTGCCTGAGAAGTATCACATGGACATAGTGGGAGAAATTCCCCTAGGATTTCCTGCTCCGATCCTCCCAACAGTGATTCAGTGGGATGACATGCTGAGCACAGCCTTCTCCCTGGCTATCGTGGGCTATGTGATCAACCTGGCTATGGGCAGGACACTGGCAGCAAAGCATGGCTACGATGTGGATCCCAACCAGGAGATGTTGGCTCTGGGCTGCAGTAACTTCTTGGGGTCTTTCTTCAAGATCCATGTGATCTGCTGTGCTCTGTCTGTCACCTTGGCAGTAGACAATGCTGGGGGAACATCACAGTTTGCCAGTCTGTGTGTGATGCTGGTGGTCATGGTCACCATGCTGGCCTTGGGGGCTTTCCTCAAACCACTACCAAAGTCTGTGCTGGGAGCCCTGATAGCGATCAACCTGAAGAACACACTGCTGCAACTCTCTGACCCATATTACCTCTGGAAGAAGAGCAAACTGGACTGTtgtgtgtgggtggtgtccTTTTTAGCCACCTTCTTCCTGAGTTTGCCTTATGGAGTTGCCATTGGAGTCAGCTTCTCCGTCCTCGTGGTTATTTTCCAGACCCAGTTTCGAAATGGTTCAGAGATGGCTCAGATCATGGACACAGATCTCTACAAAAATCCCAAGATTTACAGCAAGGTGAAATGTGTAGAGGGGGTGAAAATAGTGAACTACTGCTCCCCTCTCTATTTTGCCAATGCAGAGATATTCAGACAAAAAATCATCAAAAAGaCTGGATTGGACCCAAGTAAACTTCTCTTAGCCAGGAAGAAGTTTCTGAAGAAGCAGCAGAAGGAGTTAGAAGGCCAAAACAAGAAGACCAAGAAGAAGAAGCCCTGCTCTTTGGTAACCATGAAGTCTCAgACCATATCACAGATAGAGCTTCAGAATGACTTTGACATTGGTGACAGCAATCCTTACCCGCCACCATCACCAACCAACTATGTCAACTTCCACTGTAGTGACATTGAGCTGGGCGAGCAGCCTCCCGAACCAGACCAACCAAGTTCCTCCCCTGTTACCCTGGACTCTCAACCCAGGCCCTTCCACACCCTCATCCTGGACCTGGCAGGGGTCTGCTTCATAGACCTCATGGGAATCAAAGTACTCATCAAGATGAACTCAAGCTATGAGATGCTGGGGATCAAGCTTTACTTGGCCAATGTTCAAGcacAGGTGTACGAGGagctggaggggggaggggtgtttGAGGAGGGCAATATCGCCCAAGGtcacctcttcctctccgtcCATGACGCCATCCTCTGTGCCCAACAGAGGTCAAGAAACACCGAAACCTCTGAAAAGacagagaaagagaggaaggagctGGTCCTCCATAttcaggaggatgaggagagggatcTGGAGCAGGAACTGTTTTGAACATGGGATTTTTTACTACTGAATGTATGGAGAATGTATGAAACGAATGAAGATCGAGGAAAATGTTCATTTAGGTTgataataaacaaaacaaaaaag
>XM_021566104.2
CTCCTCCCACGGAGAAGGTGTCAGCATAGCCCCAGTATAAAACAAATACTGAGTCTTTTCTGGGGTGTGAAAACTCAAACCAGTGCCATCCGATGGTTCACTCTGACACTACGCTGCATGGATACTAGCGTCAATTCTTGGCCTGTCTAACTAtcctctgattggctgaaacCATGCAACAAGAGCGCCCACGCTATGTGATCAACAGGCCAGCCTACTCCCTCCCAGACTTTGATGGGGAGTTTGACAAGAAGAAACGGGCCTTCCCCATAGGAGAGAAAGTGAAGAAATGCTTCAGGTGCTCTGGGTCTCGACTCAAGTCCCTGCTGTTCAGACACCTGCCTATCCTGAGCTGGCTGCCCAAGTACAAGGTGAAGGAGAACCTGCTGTGTGATGTCATTAGCGGGGTCAGCGCAGGCACCATTCAGGTTCCTCAGGGCATGGCGTTTGCTCTGCTGGCTAACCTGCCTCCTGTCAATGGCCTCTACTCCTCCTTCTTTCCTCTCATCCCTTACTTCTTCATGGGCACTGCTCACCAAATGGTCCCAGGTACTTTTGCTGTGCTCAGTATCATGGTGGGAATGGTGTGTCTGAGTCTGGCCCCTGAGTCTGACTTCAGCCACTTCAATGCCACCCTCAATGCTACACTAGTGGACGAGGACAGGATGAACGAGGTTCGACTGGGCATCTCTGGAACACTGGCCTGTCTCACTGCCGTCATCCAGATGGGCCTGGGCCTAATGCAGTTTGGCTTCGTGGCCATCTACTTGTCTGAGTCGTTCATCAGGGGCTTCATGACGGCTGCAGGACTGCAGATCCTCATCTCTGTACTGAAGTACATCTTTGGTATTAAAGTACCTCCCTACAGTGGACCACTTGCCACCATATATACTCTAAAAGATATTTTTTATGGCCTGCCTGACACCAACATAGCCTCGCTGGTCTTTGCTCTGGTCAGTAGTGTGGTACTCATCACAGTGAAGGAGCTGAGTGCACACTTCCGTCACAAACTGCCTTTCCCCATCCCCATGGAGATCATTGTTGTGGTAGTGGCCACAGCCATATCAGGTCCCCTGGACCTGCCTGAGAAGTATCACATGGACATAGTGGGAGAAATTCCCCTAGGATTTCCTGCTCCGATCCTCCCAACAGTGATTCAGTGGGATGACATGCTGAGCACAGCCTTCTCCCTGGCTATCGTGGGCTATGTGATCAACCTGGCTATGGGCAGGACACTGGCAGCAAAGCATGGCTACGATGTGGATCCCAACCAGGAGATGTTGGCTCTGGGCTGCAGTAACTTCTTGGGGTCTTTCTTCAAGATCCATGTGATCTGCTGTGCTCTGTCTGTCACCTTGGCAGTAGACAATGCTGGGGGAACATCACAGTTTGCCAGTCTGTGTGTGATGCTGGTGGTCATGGTCACCATGCTGGCCTTGGGGGCTTTCCTCAAACCACTACCAAAGTCTGTGCTGGGAGCCCTGATAGCGATCAACCTGAAGAACACACTGCTGCAACTCTCTGACCCATATTACCTCTGGAAGAAGAGCAAACTGGACTGTtgtgtgtgggtggtgtccTTTTTAGCCACCTTCTTCCTGAGTTTGCCTTATGGAGTTGCCATTGGAGTCAGCTTCTCCGTCCTCGTGGTTATTTTCCAGACCCAGTTTCGAAATGGTTCAGAGATGGCTCAGATCATGGACACAGATCTCTACAAAAATCCCAAGATTTACAGCAAGGTGAAATGTGTAGAGGGGGTGAAAATAGTGAACTACTGCTCCCCTCTCTATTTTGCCAATGCAGAGATATTCAGACAAAAAATCATCAAAAAGaCTGGATTGGACCCAAGTAAACTTCTCTTAGCCAGGAAGAAGTTTCTGAAGAAGCAGCAGAAGGAGTTAGAAGGCCAAAACAAGAAGACCAAGAAGAAGAAGCCCTGCTCTTTGGTAACCATGAAGTCTCAgACCATATCACAGATAGAGCTTCAGAATGACTTTGACATTGGTGACAGCAATCCTTACCCGCCACCATCACCAACCAACTATGTCAACTTCCACTGTAGTGACATTGAGCTGGGCGAGCAGCCTCCCGAACCAGACCAACCAAGTTCCTCCCCTGTTACCCTGGACTCTCAACCCAGGCCCTTCCACACCCTCATCCTGGACCTGGCAGGGGTCTGCTTCATAGACCTCATGGGAATCAAAGTACTCATCAAGATGAACTCAAGCTATGAGATGCTGGGGATCAAGCTTTACTTGGCCAATGTTCAAGcacAGGTGTACGAGGagctggaggggggaggggtgtttGAGGAGGGCAATATCGCCCAAGGtcacctcttcctctccgtcCATGACGCCATCCTCTGTGCCCAACAGAGGTCAAGAAACACCGAAACCTCTGAAAAGacagagaaagagaggaaggagctGGTCCTCCATAttcaggaggatgaggagagggatcTGGAGCAGGAACTGTTTTGAACATGGGATTTTTTACTACTGAATGTATGGAGAATGTATGAAACGAATGAAGATCGAGGAAAATGTTCATTTAGGTTgataataaacaaaacaaaaaag

Function

NR:

description
solute carrier family 26 member 9 isoform X1

GO: NA

KEGG:

id description
K14706 SLC26A9; solute carrier family 26 (sulfate anion transporter), member 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566103.2 False 2590 mRNA 0.50 21 45308346 45315784
XM_021566104.2 True 2585 mRNA 0.50 21 45308346 45315784

Neighbor

gene id symbol gene type direction distance location
LOC110492092 LOC106567333 coding downstream 809 45303720 ~ 45307537 (-)
plxna2 LOC106567158 coding downstream 343655 44621739 ~ 44964691 (-)
cd34a cd34a coding downstream 712133 44560201 ~ 44596213 (-)
LOC110492088 NA coding downstream 767589 44538351 ~ 44540757 (-)
LOC118939541 NA coding downstream 813078 44489262 ~ 44495268 (-)
slc48a1a LOC106567162 coding upstream 164 45315947 ~ 45320378 (-)
itga5 LOC106567163 coding upstream 62481 45378265 ~ 45432804 (-)
LOC118939605 NA coding upstream 139778 45455562 ~ 45455616 (-)
csrnp2 LOC106567166 coding upstream 178129 45493913 ~ 45505194 (-)
LOC110492099 LOC106567167 coding upstream 190295 45506079 ~ 45523249 (-)
G1379089 NA non-coding downstream 71346 45236754 ~ 45237000 (-)
G1379076 NA non-coding downstream 80730 45227395 ~ 45227616 (-)
G1379060 NA non-coding downstream 95238 45212762 ~ 45213108 (-)
G1379017 NA non-coding downstream 126343 45181779 ~ 45182003 (-)
G1379007 NA non-coding downstream 130734 45177192 ~ 45177612 (-)
G1380277 NA non-coding upstream 72770 45388554 ~ 45388866 (-)
G1380287 NA non-coding upstream 87033 45402817 ~ 45403068 (-)
pou6f1 LOC106567168 non-coding upstream 210205 45525987 ~ 45536632 (-)
G1380361 NA non-coding upstream 229226 45545010 ~ 45545226 (-)
G1380386 NA non-coding upstream 288093 45603877 ~ 45604864 (-)
G1378530 NA other downstream 754799 44553014 ~ 44553547 (-)
G1377482 NA other downstream 1615508 43692320 ~ 43692838 (-)
G1376991 NA other downstream 1969791 43337162 ~ 43338555 (-)
LOC110492063 LOC106567124 other downstream 2083963 43217803 ~ 43243705 (-)
LOC110492109 LOC106567177 other upstream 302433 45613938 ~ 45627786 (-)
G1380431 NA other upstream 389326 45705110 ~ 45705453 (-)
LOC110492748 ppdpf other upstream 1100776 46416560 ~ 46419996 (-)
LOC110492764 fkb1a other upstream 1282913 46598697 ~ 46601691 (-)

Expression


Co-expression Network