slc48a1a (LOC106567162)


Basic Information

Item Value
gene id slc48a1a
gene name LOC106567162
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 45315947 ~ 45320378 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566106.2
AGAAGATGAACCTTCCTGGGCCGGTAGGAGAAGTTGTTAATTTGTTGCCACTGTAGGTTACTGTTTTTGTCGGTTGTGTGTAATTTACACAATTGCAGCGTGTGTTGTGTTCGCTCGATAACCAATTCGTTTGTATCAATTCGAGATGGTTCATGTGATGTAGCTGAAATCAGTTGTTGTATAGCCAGTTCGAGTGATTTCAGGATAACAACAGCTAGCCAGGACTGCTGTTGCGTAATCACTATACTCCGTGAGCCGTGTTTGTCAGGCTACGTTTATACGTTGTTATTGACCGTCAAAATAGCagcttcccccccaaaaaaacttttcaatttatagttatagttatatccGTGTTAATGGGGAAGAGTAGAACATACATCAGTATAGGATATGCTACCTTTGGTATGCTAGTTGGTTTTTCAGCATTTTTTGTCTGGAACATAGCATACAAACAACCATGGACGGCGGCAATGGGCGGATTGTCAGGAGTGCTGGCGCTCTGGGCCCTTGTCACCCACATTATGTACCTGCAGGACTACTGGCGCACATGGCTGAAGGGACTCAAGTTCTTCATCTTTGTTGCGGGTCTCTTCTCCATCCTGGCTGTGGTGGCCTTCGCTACTTTCCTCACCCTCGCCATCACACAGAAGCAATCTCCCACTGACCCGACGAGCCTGTACCTGTCCTGTGTCTGGAGCTTCCTCACTCTCAAATGGGCCTTCCTCCTAGCCCTGTACTCTCACAGGTACCGCCAGGAGTTTGCAGACATCAGTATCCTCAGTGACTTCTGATCACCATCCATTTTACCCACCATACACTGGGTAGGAGGTTTGGGGAACCAGCCAGCTGCAGAAGAGTTGGTAAAAAAAAACGTGTTTCAACGAAAGTGAGCACAGAGAATCTGGAAGGGCTGCATAAGAGTTCTTTGAACTTTTAATCAGCGTAGTTACACACTCCGGACAAGCCCTACATTGTTGTCAACCCTCACTACTATACATACAGTAACAGCTCATTTGTTTTGTTGGGGTGAGTAGCCATATAGTCACTTGGAAAAACTCCTGATGGGGATCCACTGCTTATCTGTAATGGCAGGCAGCAGTGGCTTATGTTTCTAAGCAAGGATTTGCACAAGGCTATTTGTAGAGTGGCTTAGGGATCAAGACTAGGTCATGTAGGCTGTGGGGGTTTGCCTCTGAGGATTTGGGTCGAAGCTTTCCAAAAAGACACAGTTTTTAAGAATTGTATTTTAAATTTCAGGTTGAAATGTATTGATCCAATGTCCAATCTAATGAGTAAGTGTCAAATACACCCATGGGGAAAAAGGTTGTCACTGTGTTATGTGgtctctctgctgtttctctctccgTCACTAGGGAGAGCAGGATTATTTAGCCAGTCGTTGCTATCTCTGTCTGGATGTTGGCTTGTCATATGCTTTTGAATATTTGTTATTCTCTTTTAGTTAACTACACACACATATTTGATGTGATGCATAATAATGCACTTTAAAGTGTTATTCATTCCATTGGATTGGTTCTTCCAATGCTGTCGTCTGCTTTTAAAGAGAAAAGGCCAGAGGGTGAGGATGGATATAATGCAAGCTAATACACAGGTGTATGGAAGTCCTGATTTGATGGGGTTTCTTTTTCACTGTTTCTATCTTCATACGTTTTCTGTCTTATATTCATGTTGATCAGCACATTATTTGGCTTTGTTTTTATCATATTAAATATCTAATGTATTTAAACAATTTCCACCTTTTAAACAAGTTGGTCTTGATTTTAAACCTGGTATCCTTCTATATTTGTATAGCAATGCCTGCAAATGTGTGAATGGTGTGTTTTTGTACGAGATAGAGAAAGGCTATTCGTGAGAGAGAAATATTTTAAATAAACAATTGGTTCGTTTTGCATGGTAagagttttttaaaaatgtattcacaAGATGTATTTTGGTTGTACATTCTATTAATAAATGTTGAACTGTG
>TU1576625
GAAGAAGATGAACCTTCCTGGGCCGGTAGGAGAAGTTGTTAATTTGTTGCCACTGTAGGTTACTGTTTTTGTCGGTTGTGTGTAATTTACACAATTGCAGCGTGTGTTGTGTTCGCTCGATAACCAATTCGTTTGTATCAATTCGAGATGGTTCATGTGATGTAGCTGAAATCAGTTGTTGTATAGCCAGTTCGAGTGATTTCAGGATAACAACAGCTAGCCAGGACTGCTGTTGCGTAATCACTATACTCCGTGAGCCGTGTTTGTCAGGCTACGTTTATACGTTGTTATTGACCGTCAAAATAGCagcttcccccccaaaaaaacttttcaatttatagttatagttatatccGTGTTAATGGGGAAGAGTAGAACATACATCAGTATAGGATATGCTACCTTTGGTATGCTAGTTGGTTTTTCAGCATTTTTTGTCTGGAACATAGCATACAAACAACCATGGACGGCGGCAATGGGCGGATTGTCAGGAGTGCTGGCGCTCTGGGCCCTTGTCACCCACATTATGTACCTGCAGGACTACTGGCGCACATGGCTGAAGGGACTCAAGTTCTTCATCTTTGTTGCGGGTCTCTTCTCCATCCTGGCTGTGGTGGCCTTCGCTACTTTCCTCACCCTCGCCATCACACAGAAGCAATCTCCCACTGACCCGACGAGCCTGTACCTGTCCTGTGTCTGGAGCTTCCTCACTCTCAAATGGGCCTTCCTCCTAGCCCTGTACTCTCACAGGTACCGCCAGGAGTTTGCAGACATCAGTATCCTCAGTGACTTCTGATCACCATCCATTTTACCCACCATACACTGGGTAGGAGGTTTGGGGAACCAGCCAGCTGCAGAAGAGTTGGTAAAAAAAAACGTGTTTCAACGAAAGTGAGCACAGAGAATCTGGAAGGGCTGCATAAGAGTTCTTTGAACTTTTAATCAGCGTAGTTACACACTCCGGACAAGCCCTACATTGTTGTCAACCCTCACTACTATACATACAGTAACAGCTCATTTGTTTTGTTGGGGTGAGTAGCCATATAGTCACTTGGAAAAACTCCTGATGGGGATCCACTGCTTATCTGTAATGGCAGGCAGCAGTGGCTTATGTTTCTAAGCAAGGATTTGCACAAGGCTATTTGTAGAGTGGCTTAGGGATCAAGACTAGGTCATGTAGGCTGTGGGGGTTTGCCTCTGAGGATTTGGGTCGAAGCTTTCCAAAAAGACACAGTTTTTAAGAATTGTATTTTAAATTTCAGGTTGAAATGTATTGATCCAATGTCCAATCTAATGAGTAAGTGTCAAATACACCCATGGGGAAAAAGGTTGTCACTGTGTTATGTGgtctctctgctgtttctctctccgTCACTAGGGAGAGCAGGATTATTTAGCCAGTCGTTGCTATCTCTGTCTGGATGTTGGCTTGTCATATGCTTTTGAATATTTGTTATTCTCTTTTAGTTAACTACACACACATATTTGATGTGATGCATAATAATGCACTTTAAAGTGTTATTCATTCCATTGGATTGGTTCTTCCAATGCTGTCGTCTGCTTTTAAAGAGAAAAGGCCAGAGGGTGAGGATGGATATAATGCAAGCTAATACACAGGTGTATGGAAGTCCTGATTTGATGGGGTTTCTTTTTCACTGTTTCTATCTTCATACGTTTTCTGTCTTATATTCATGTTGATCAGCACATTATTTGGCTTTGTTTTTATCATATTAAATATCTAATGTATTTAAACAATTTCCACCTTTTAAACAAGTTGGTCTTGATTTTAAACCTGGTATCCTTCTATATTTGTATAGCAATGCCTGCAAATGTGTGAATGGTGTGTTTTTGTACGAGATAGAGAAAGGCTATTCGTGAGAGAGAAATATTTTAAATAAACAATTGGTTCGTTTTGCATGGTAagagttttttaaaaatgtattcacaAGATGTATTTTGGTTGTACATTCTATTAATAAATGTTGAACTGTGG

Function

NR:

description
heme transporter hrg1-B

GO:

id name namespace
GO:0015886 heme transport biological_process
GO:0015232 heme transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566106.2 False 1990 mRNA 0.41 3 45315948 45320376
TU1576625 True 1993 TUCP 0.41 3 45315947 45320378

Neighbor

gene id symbol gene type direction distance location
LOC110492093 LOC106567160 coding downstream 164 45308346 ~ 45315784 (-)
LOC110492092 LOC106567333 coding downstream 8411 45303720 ~ 45307537 (-)
plxna2 LOC106567158 coding downstream 351257 44621739 ~ 44964691 (-)
cd34a cd34a coding downstream 719735 44560201 ~ 44596213 (-)
LOC110492088 NA coding downstream 775191 44538351 ~ 44540757 (-)
itga5 LOC106567163 coding upstream 57889 45378265 ~ 45432804 (-)
LOC118939605 NA coding upstream 135186 45455562 ~ 45455616 (-)
csrnp2 LOC106567166 coding upstream 173537 45493913 ~ 45505194 (-)
LOC110492099 LOC106567167 coding upstream 185703 45506079 ~ 45523249 (-)
pou6f1 LOC106567168 coding upstream 205611 45525987 ~ 45536632 (-)
G1379089 NA non-coding downstream 78948 45236754 ~ 45237000 (-)
G1379076 NA non-coding downstream 88332 45227395 ~ 45227616 (-)
G1379060 NA non-coding downstream 102840 45212762 ~ 45213108 (-)
G1379017 NA non-coding downstream 133945 45181779 ~ 45182003 (-)
G1379007 NA non-coding downstream 138336 45177192 ~ 45177612 (-)
G1380277 NA non-coding upstream 68178 45388554 ~ 45388866 (-)
G1380287 NA non-coding upstream 82441 45402817 ~ 45403068 (-)
G1380361 NA non-coding upstream 224634 45545010 ~ 45545226 (-)
G1380386 NA non-coding upstream 283501 45603877 ~ 45604864 (-)
G1378530 NA other downstream 762401 44553014 ~ 44553547 (-)
G1377482 NA other downstream 1623110 43692320 ~ 43692838 (-)
G1376991 NA other downstream 1977393 43337162 ~ 43338555 (-)
LOC110492063 LOC106567124 other downstream 2091565 43217803 ~ 43243705 (-)
LOC110492109 LOC106567177 other upstream 297841 45613938 ~ 45627786 (-)
G1380431 NA other upstream 384734 45705110 ~ 45705453 (-)
LOC110492748 ppdpf other upstream 1096184 46416560 ~ 46419996 (-)
LOC110492764 fkb1a other upstream 1278321 46598697 ~ 46601691 (-)
LOC110492767 LOC106572444 other upstream 1337091 46657459 ~ 46668762 (-)

Expression


Co-expression Network