itga5 (LOC106567163)


Basic Information

Item Value
gene id itga5
gene name LOC106567163
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 45378265 ~ 45432804 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947020.1
CAATTAGTTGCAGAGCGAGCGTAGTGAGGGACAGCGAGCGGCGAGGACGCCGAGGGAAGAAGCTGACTGAGCATTTAGGAGATATATACAGCGAGTTTTAGTTTCAAGGAATGCAGTTTAGATAAATAGGTACAACAACCACTCCACAAGCTCTACGGATCTGAAAACATTAGAGCAACTCAGGTGTTGattaaaacaaaacacattttagtGGATTCATTTAGAAATAGAATGGGTTCCAGAAGATACCGTTCGGAGAAGCCGGGAGAAGTGAACTACCCATTCTGCTGCATTGGGGTTTGTCTGATAATAATCCTACAGTTGTGTGCTGCGTTCAACTTGGACGTGGAAAACCCCACGGTCTACAGCGGACCTAATGGGAGCTACTTTGGATATTCCGTTGAATTTTACTTGACCAATTCCTCAAGTGTCAGTGTGGTGATCGGTGCTCCCAAGGCCAATACCAGCCAGCGCAACATCACAGAGGGCGGGTCCGTGTACTACTGCCCATGGAGTCTCGGCCAATCAGAGTGCCACAACATTGAGTTTGACAATCAAGGGGACCGAACAGTCACACTCAACAACACAGACTACCAGGCTGAAGTCAAGTCCCACCAGTGGTTCGGCGCCACCGTCCGTTCCCACGACGACACCATTCTGGCCTGCGCCCCTCTGTACTCCTGGAGGACCAAAGAAGACATGCCCCAGTCAGATACCACAGGAACCTGCTACCTCTCTGTCAAGAACTTCACTAAGTTTGTGGAATATGCTCCCTGTCGCACAGAATTCATTAACGAGGGGGGCCAGGGCTACTGTCAGGGGGGATTCAGTGCTGATTTCACCAAGgaTGGGAAAGTGGTGCTTGGAGGACCAGGCAGCTTCTTCTGGCAAGGTCAGGTGATCTCAGCAGCCAAAGAAGAGATCATCAAGGCTTACTACCCAGGGTACTTCATGCAGTCTGTAGAGGGACAGATCCAGACCAGACAGGCTCAGCTCAAATATGACGACAGCTACCGCGGTTACTCTGTTGCAGTCGGGGAATTCAGTGGAGATGAGGTGGAAGATTTTGTGGCTGGGGTCCCAAAAGGAGTCATGCTATACGGTTTGGTGTCTGTTTTAAATGGCACCGATCTGAAGTCTATGCTCGACTACACTGGTGAACAGATGGGCTCCTATTTTGGGTACGCTGTGGCCACAGCTGACATCAATAACGACGGCATGGTTGACCTGTTGGTGGGAGCTCCCATGTATATGACCCGGGGGTCAGACAGTCGCCTGGAGGAGGTGGGCCGTGTGTACGTCTATCTGCAACGTGGACCCCTGAACCTGGAGCCAACCCTCAACCTGACCGGAACCCAGGTGTTCGGGAGGTTTGGTAGCACCATTGCCGCTCTGGGAGATCTCAACCAGGACGGATACAatgATGTGGCCATCAGCTGTCCATTCGGTGGAGATGACCAGCAGGGATTGGTTCTCATCTACAACGGATTTGTTGGTGGGCTCAGGGACACCCCCTCTCAGGTCATAGCTGGCCAATGGGCTTCAGGCACTGTGCCCGCAAGCTTTGGATTTGCCCTCCGAGGGGCTAAAGACCTGGACATGAATGGTTACCCAGATCTTATTGTTGGTGCTTTTGGAGTTGACAAGACAGTTCTGTACAGATCCCGGCCCATCGTCAACACCAGTGCCTCCCTGACTGTCTACCCCACCATGATCAACCCTGAGGAGAAGAGTTGTTCAGTCAACAACGGCAACACCACCATCCCTGTCTCCTGTGTCAACCTGAGTTTCTGCCTCTCGGCCAATGGGAAGTACCTCCCAGACAACCTAGacttCCAGGTAGAGGTGCAGTTGGACCGTCTGAAGCACAAGCAGAAGGGAGGGGTGAAGAGGGCTCTGTTTGTAGACTCCCAGCAGACAGTGCTCACGAGGAGTGTGAGGGTGCGGAACAGAGAGCGTGTGTGTCATGACACCAAGATCTATCTGAGgGATGATAAGGAGTTCAGAGATAAGCTCTCCCCCATCTACATCTCCCTCAACTTCAGTCTGGATCCTCAGGCAGCTTTCGACTCCCACGGCCTCAGACCCATCCTCAACTACCAGTCCACCGAGCTCATCGAGCAGAAGgCCCAGATTCTGCTGGACTGTGGAGAAGACAACATTTGTGTTCCTGACTTAAAGCTGGCGGTGCACGGGGACCGGAAGGAAGCGTACCTAGGTGACGACAACTCACTGACCTTGACTTTCAACGCTCGGAACGAGGGTGAAGGAGGGGCCTACGAGGCTGAGCTGTACGTGGTGCTGCCTCCTGAAGCGGACTACAGCGGTATAGCCCGCAATAACGAGagCCTGACCCAGCTAACTTGTAGCTACGAGACAGAGAACCAGACCCGCTACCTCAGCTGTGACCTGGGCAACCCTATGAAGTCTGGCACCAGCCTGTGGGCAGGTCTGCGCTTCACTGTGCCACGACTGAAGGACACGCGCAAGACGGTTCAGTTTGAGCTGCAGATCCGCAGTAAAAATGAGAATAATTCCCACAGCGAGGTGGTTCCCTACAGGTTGGAGGTGGTTGTCCAGGCCGATGTTATTTTACAAGGAGTCTCCCGGCCAGACAAGGTCTTCTTCCCTCCTCCCAACTGGAAGGTGTCCAAGAGCCCCCAGGTAGAGCAGGACATCGGGCCTGCAGTCCAACACGTCTATGAGctggtgAACAAAGGCCCCAGTGGTATTAGCCACACAGTGCTTCAGCTCAGTTGTCCTCTCAGTGTTCAGGGCCagggtctcctctaccctctggAGATCTCTACTGAGGGACCCCTCAACTGCACCACCAACCACTCCATCAACTACATGCAGCTCAAGCTCCAGCAGTCGTCCACAGAGCAGCCTCCCCTACTTGTGCCCGGCCAGGATCACCACATCGAGAGGAGAGACGTCCACAGAGACCAGCTGGCTGAGCACACTAACCTGtccTGCTCTAATGTAGAATGCTGGACGCTGCAGTGTGACGTTGGTCTTCTGGAGAAGGGGACCAGCGCCATCCTCAAAGTGCGCTCACGCATCTGGGCTGAGACCTTCATCGAGAGAGCATACAAAGGGTATGTGCTTGAGTGCCTGGCAAGATTCAGTGTAATCAAGATGCCCTATGCCATCTTACCCAAGGAGCTACCAAGTGGATCTAAAAAGGTGGTGACCCCGGTGGTGTGGAACAAGCCGGACAGCCAGTACTCTGTGCCAATGTGGATCATCATCTTGGCCATACTAGCTGGACTTCTTCTGCTGGCACTGGTGATTTACGTCCTGTACAAAcTTGGCTTCTTCAAGAGGTCGCTACCCTACGGCACGGCTATGGAGAAGGCCCAACTCAAGCCCCATGCTACGTCTGAGGCCTAAACACCACAGAAGGATTAAAACAAGCTACTTTGTTGTCAAAGAACCAAAGAAACCTAGATACACACATGATTGCAACAGAGAAACGTGGTTCATTTAAATGTccagagaggatcagactgcagttgaagagtgaggaagaggaggagaaaagaccACTGGAACTCCACTGTACTGCACTAGAGGAAGAAAACCCTAAGAACTCCAAACCAAATGAATGTTTTTAATTTAATATGTGTTGTTTTGTTTGTCCTCGTCGGGGTTGTGGTCGATCACCAAGATGAACAGTGTCACAGTCAGACAAACAGGCCTGAGACTTATTCCTATTTGAGTTGAAGTCCAAGACGAGTGACTACAGAAGATGGAGAATGGGAGCCCTTGATTAGCCCAGGATGGAGGAAGACGCTTGGTTTCTCCCTCGACATCTTTTAAAATAGCTTTTACTTCTCTTGGATCCCTGTGAAAGATAATAATGTTTAAGTCTTTTTaattgcctttgttttggtgCTAAAAAGTACAAATGTGCTCAGTGCTTCAAACGGGATGGCCACATCTTTCTTCTGGTGTCGAGGGGAGTGAatacctctctcttcctttttgTAGCATTAAAGAATCACAGCCGATACTTTCCCCACCAAAGACCTGGAAACTGCATGATCAGGGTTTCTACCCATAGACAGATGATTGTGTCTGTATCATGTTGCCAAACTCTCTACACTTTGACTTTTTACCTATGAACATTTCTACCAAAGATTTTTTACAGTCTCGTCTGTTAATGTTTTATGTAAGATGTAAGTGCAGCCCAAGTGCTCCAGTAATGTTTGTCAGACTCCTCTGTTTTATCTAAACCTATCTACATGGCTTCTGCCCGCTTCTGAGTGGTGGACATGCAGTGCTTGGTTCAGTTGTTTTGCACACAAAGGAAATCTACTGATGACTAACAAGATGCCAAAAACAGACaggatactgactgactgatcttcCTACGAGTTTGACATGAACTGATCACGTCGTGTTGATCCATGTTCGTTGTGACAAAATTAAAGCATTGCCTCAAAGTCGTCTGGGACTTGACTGGATCCACCACCATGGGCCTGTGAGATAGATCTCACTAACAGCTTGAAACAGTGTGGTGCTTTGCCAGAACTCTGGCTGGTGACTTGTAAGCAAGGTTTCCAGACGTTGCTTGTGCTGCAAGAGGCAGTATGGAAATTGGGTTGAAGCAAAGGCCATCCAGGTATATCCTCAGccttggtgtgtaatgatgtcttgaaagtcaatatataccTATCATGTGTGTTGCCAACAGAGATCAGGGAAGTTGCAGTACATTCTGAGTGGGTTGCTAGCAGGTCAGGGCTCATTCCATGTGAGTGTCAGGGAAACAGCCAAATGTCCAGTCCCTACACATTTGGCCTCGATCTTAGTGTGCTGCAAGCATCTTCACTTtggttgatttattttattttatttgatgccCTTATGGATAAAGAGAACTGACTATGAGTACCAAATGCACTCCCAACACAATGCTGCAGCTTCACCCAGGGACTGAAAATATGTGGGGTTCATTTATTTGTCATGTTTATATGTAAATaaatagtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttggactgcGTGTGACTTCATGTGTGCATGCTCCTGTCTGTGTATGTTTTTCGTGTCAATCAGAGAGATCTTTCCCATTGCTAAGTCCGCTCCTTCCTCCCTTGCATCCCTTCTCTAGACTTGTCCAGCAGTAATGCTGATCATCGCGCCACTACAATTTGTGCTCAGGATAGGATGAGACTGCTGTTCAGGACAGCTAGGACCAGAGTAGCTATTCATTTAATGCAACAGAGAGCATGTACATACATGTCTGTACTGTATAATCAGTTTGTGCCTCTTGTAAAGGAATAGCAACTGGGCATTGGGAACAAAAAATCATCTTGTTTGTACGTGCAATATTATTTACTCTGGTTAATAtcgtttttctttttttgttgttgcattttttgttattttctttgGTTTTGTTCCGGAGGAGTTGCGCTAAACCCATTGTATCTACCATCTGGTGATGAGTGTGAGATGTCAACCATACATAAACTCTTCTCGTGGTCGGagcgttatggtcagattttttCTCTCTAGGTCTTTCCCATTTTTGACCACTTACATTTTGCTCCACCATTATAACTAGCCAATCTTTAGTATCGATATTTTAGATATCagtggtaaaatatatatatatatatatatatatatatatataacgacCTCCATCAAACCTCTGAGTTGAACTCGAGTTACTTGTGTGATAATGTATGTGCAGTTCAATTGTATCAGCTATCTAAACACAGCCATAGTGTTACACATCTGTTTTGATCTGCTATGCCCCCTGGATGATATTGGTGATTTCATTCTGCGATTAGGCTTTTCATGAGAGAGCTTTATCCAGACTCGTGGTGCAAAGACTGCTAATGCCTCTCAGTGGATTCATTTTACACATATACAATTGTTTTGAACAGCATTTGTATGACGTTAGTGTCCAGACTGAACATTTCAACCTAGGGTTATTTATATGTTgaggatgttttaaacataatcCTCTGTGGTTAAAGCAGGATACTACACTGGGTTTATCCTAGCCcctttttaatcatttttttctcctttttaccaaaagttgtaaatatatttCTGACAAGGAGAATGTTTTTAGATCCAATAAAAAATAATTGCTTGTTGTGAAATTTACTCTCCTCATATTGGGGGGTGTTAGTCTTTCAGTGATCATTTGTATCTTATTTTATGGTTTGCATTTCCaataaaaaaaaagtacattttttt

Function

NR:

description
integrin alpha-5-like

GO: NA

KEGG:

id description
K06484 ITGA5, CD49e; integrin alpha 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947020.1 True 6288 mRNA 0.47 30 45378265 45432804

Neighbor

gene id symbol gene type direction distance location
slc48a1a LOC106567162 coding downstream 57889 45315947 ~ 45320378 (-)
LOC110492093 LOC106567160 coding downstream 62481 45308346 ~ 45315784 (-)
LOC110492092 LOC106567333 coding downstream 70728 45303720 ~ 45307537 (-)
plxna2 LOC106567158 coding downstream 413574 44621739 ~ 44964691 (-)
cd34a cd34a coding downstream 782052 44560201 ~ 44596213 (-)
LOC118939605 NA coding upstream 22758 45455562 ~ 45455616 (-)
csrnp2 LOC106567166 coding upstream 61109 45493913 ~ 45505194 (-)
LOC110492099 LOC106567167 coding upstream 73275 45506079 ~ 45523249 (-)
pou6f1 LOC106567168 coding upstream 93183 45525987 ~ 45536632 (-)
LOC110492104 LOC106567172 coding upstream 115145 45547949 ~ 45559553 (-)
G1379089 NA non-coding downstream 141265 45236754 ~ 45237000 (-)
G1379076 NA non-coding downstream 150649 45227395 ~ 45227616 (-)
G1379060 NA non-coding downstream 165157 45212762 ~ 45213108 (-)
G1379017 NA non-coding downstream 196262 45181779 ~ 45182003 (-)
G1379007 NA non-coding downstream 200653 45177192 ~ 45177612 (-)
G1380361 NA non-coding upstream 112206 45545010 ~ 45545226 (-)
G1380386 NA non-coding upstream 171073 45603877 ~ 45604864 (-)
LOC110492109 LOC106567177 non-coding upstream 181134 45613938 ~ 45627786 (-)
G1380346 NA non-coding upstream 212990 45645794 ~ 45646100 (-)
G1378530 NA other downstream 824718 44553014 ~ 44553547 (-)
G1377482 NA other downstream 1685427 43692320 ~ 43692838 (-)
G1376991 NA other downstream 2039710 43337162 ~ 43338555 (-)
G1380431 NA other upstream 272306 45705110 ~ 45705453 (-)
LOC110492748 ppdpf other upstream 983756 46416560 ~ 46419996 (-)
LOC110492764 fkb1a other upstream 1165893 46598697 ~ 46601691 (-)
LOC110492767 LOC106572444 other upstream 1224663 46657459 ~ 46668762 (-)

Expression


Co-expression Network