csrnp2 (LOC106567166)


Basic Information

Item Value
gene id csrnp2
gene name LOC106567166
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 45493913 ~ 45505194 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947024.1
AGCCTCAAGCGAAGATTTGAGGAGGTGGACAGTGGCTCTCCCTACTCTACACCAAAGGACTCTGACGATGAAATATCCAGCAGTGACAGTGCTGACAGCTGTGATAGCCTCAACCCCCCCTCCAGCACTGCACTCACACatggtacgaggtagacgcTAGACGGCAAGCCGGATGTCATTGTTTTCAATGAGATCACAACGGTAAAATGCTGTTGAGGCTGGCGGTGAATGACATCAGCGGCCAAGCAACCTCCATCCTAAGACGGCACAAGCCCTCTCCAGGCCGGAAGCGGGTGCGGTTCGATGTGGTGACGGTGTACTACTTCCCCAGGCGGCAGGGCTTTACCAGCGTGCCCAGCCAGGGAGGCAGCTCCCTAGGCATGGCACGCCACCACTGCTCCATCCGCCGATACACACTGGGAGAGTTCGTCCGCGAGCAGGAGACCAGTCACCGCCACGCCCTGCGCCAACACCTCCGCCAGGAGAAGCTCAACGCTCGCAAGATAAAGCTGACGCGTAACGGTACGGTGCAGTGTGCCCAGGCTGACCTGCTGACCCTGGAGGACGTGTCAGACGACGACTTGGATGTAGAGGGTGTGGAGGTGGACGACTGCTTCTTCCTGCAGCCGCTTCCCACAAAGCGGCGTCGGGCAATGCTCAGGGCCTCCGGTATCGCCCGTATAGATGCCCGGGAGAAGGCTGAGCTACGGACCATCAGGCTGTCCAGGGAGGAGTGTGGCTGTGACTGCCGTTTCTACTGTGACCCCCGTCACTGTGGCTGCAGCCAGGCTGGCATCAAGTGCCAGGTGGACAGGATGTCTTTTCCCTGTGGCTGCTCTCGTGAAGGCTGTGGGAACTCAGCAGGCCGCATCGAGTTCAACCCTCTCCGCGTGCGAACACACTACATGCACACCATCATGAAGCTGGACCTGGAGAAGAGGAGGCTGCTGGGGCAGAAGGCAGGGGTCGGGGGGGAACAGTATGCAGAGTCTGACCTGCTCGCCTCCCCTTCCTCCACCAGGCCTCCCTCCCCAGACCCTGACCTGTCCACAGGGGCCAATGGCCTGGACTCTGAgttagagacagaggagagagaggtccagaTGGTCCTAGAGGCTCAGGACCTCCTGACTGACCAGGCCTGCCTCGAGCGTGAGAACGAGACCGCTGTGCTCCACCTGCAAAGTgcagaggagcaggagaggatgagggaggaagaggaggaggaggaggcacagCGGGGCAGGGGGGGAGCAGGGGGCCTGGGGGAGCAGGCTTTGTGCCTTCTGCCTGGGTCCCTGCAGGGGGAGATGCCTGGGGACACAGGGGTTGGGGTGGAGGGGGTCCCTATCTCCCTCCTCCAGGGCCCGTTCCCCACTGGGGCTACCCTGCTCTGCATCACAGAGAAccaggagggagatggggagggggacaACCCCTGTGGTGGCCTGAAAGACCCGGACTCCTCCCTGCTCTACTACCAGATAGGTCCCATGGAGAACGAGACGTTTCACAAGTCTCTGCCTGGGCAGGAGGAGGCGTGTGTAGAGCGAGAACCAGGGGGAGGAGAGCAGCAAGGGAGGGATGAGCATGGAGGTAATACCTGCGGGCAGGGTGAGGGCGAGTTTTCGCCCCCGGTGGCTCTGTGCTCAGAGAATGGCGTGGGTGCTAAGGAGTTACCATTCAGCCCCCAGCAAAGCTCCTTAGAAGGGCAGTGTCAGGAGGAGGCTTGCctggccacagaaggagagttgtaccCACCACTGCCCCCTGAGGTTTAGTACTAGCACCTCTGTCAATGTTTTGCACAATAGCTTCATTTTGAGCTGAATAAAGCCTacactacatggatagacaatgACTATGATGTTACAGGTTAGAATTCATATTAGTAACCGTCATTACTAGAAAAATCTATTTGGAAGAAATGAGCTTGACCATTAAAATAAAGTGAAGGAGGGAAAATCATCCTGAAAGCACACCCAGATCTTTCCCCTGCAGTAGTACTGTCAGTTCAGTTGTAAGTCAATGAAATGCTCTCGTTCTAACGGGGCTGGAGATCATGGgacctgtcccaaatggcacgctaatccctatatagtgcactacttttgtccagggcccataggactctggtcaaaagtagtgcactatgtagggaatacggtgccatttgggacgctacCTGGTTGGCATTAACGAAAGAAaggactgtaactcagtaactGAGAACTAAGTAGTGTTGTTTTTAGTTCACGGCACCACTAAGAGACGGTGTGGTGGTGTGAGTGTTAACATTTGCTCTTGGAGACGTTGGTCAAGGGAGCATTTCAGAATAATTCATAGGATTCCAGTGGCTTGATTAAAACAAGAAGGTGGGGTCAGGAAGAACATGTGCTCTGTTGTATACTGAGTGATACAATAAACACCAGTTGTGTTGAAAAAGTTTGACTAATTGGCTAGCATTGTAAATGTCACACTGGTCTGGTACACTTTTTCCAGCTGTTTAGTTGTAAGCTTGGAAGCCAAATTAGGGCCACTGGCagtatctacccccccccccccttcccgaCTGAGAATAGACCTAACAAACAATCCTGGAAATACTTGTTTTTGGTGTACTGTATAAGTGTTTGAAATGGGAAAGGCAGAGCTGAAAGAGCTGCTTGTTTGATCTTCATGTTGTGGTCTGTCTAGGAACTGGGTGGTATGTGCCCCTCGCTGCATTGAGGCAAAATGGTGAAACATTTGTAAAGATCAGAAGGTTTGCACCAGTTCCTCTTTCTAAATAGCGTCTCTCCGGGTCTACCTACCTTAGACCTCTCATGCAAACACAGTTTATTTATTAAAAGGCAAGTTTACCCTATAATAGTGACCATTACACTCTTCTGATGTTATGACACTTATTTTTAACAACGTGTCTTTGTGAAAATTGGGATGCTGTGGATATTGAGCAACAACGGAGGTCTCTGTGGTCTCTGTTTAATCAATGAATGAAAGGAAGCGGTCTTTGTTTTTTACTTAGCACGTCAGATGATCGTACAGGTGGTCAGAGTCCATGGGAAGTGGACCATGTAATGCTGACGGGACAAAATAGACCTGCTTTGTCCGTCAAGTCTTCACGTCACGAGTCTACAGGGGGATGCTCTGTGAAACACAGCTATTTTAAGTCATTACGGCATCatttaagaaatatatatataatttgagGACTTAAAAGAAACGGAAAGCCTAAAGCTGTTTGAAGTAGCAATACAGAACTACAGAATAATGATGTGATGTTGCTAAATTATGTAAAGAGGATATGACAAAACTTTAATTGCATTAGTTTTTGTTgagtgtgtatggatgtgtgtgcACGTTGTTTgattgtctttgtgtgtgtttgagattgttggggggggggggggggggggggggggcgtgcaTACAATTAGTCATATTTCCTAAAAGGTGCTGTGATAGGTTAAAACATGTGTAACTTTTTCTGAGGTTACGAGAAATGTATCATTTCAAGGACTACATGTATCTTGACGGACTTTGAATCACGGACATTTCTGATCGAAAGTTTGATCAGAAATCCACAGAAATGGCATTGAAACCAACCATTTCTGTGGCGAAGGGAAGCGTTACATTAAGCCCTCTGGACACAGGGATGCAATGGCTGTAGCACACTGTCTGCAAATTATGATACTTGCTTTGAATGACATATTGTATAGGTTGTCAGTATATGTAAATGCAATCCTATAACATATTTTGgtcttttaaatgtattttttgtgcTGTGTCTGTTCTTACTGGCCTATGTATGTGAGTGTGCCGACCCATCATGCACCACAGTCTTCATCCTCGCTTGACTGATCTATTTTAAAGCTTGCTGCCATCTTGCCCAGTGTATCATGTACTGTATTATGGGCCTAACTAACACAGGATGAGATGCTGTGCATGAGGTTTCTGATATGTCTTTTTGCCTTCATTTGTTGTGTTAGCAATATGATAATGCTTAAGAGTTGCACCAAAGCAGTGGTTTCGAACCTGACTCATTGCTGTCATCATGCACCCGTTTCTAGAAGATTCAATAGGAGTCTCCAGCTCTAATTCATTCTGAAGACTTGTGGTGATCTTCTCAATCAAATAGATGTATTTGACACCATTGCTTACCTTGACACAGTTCCAGCTTCTAAGTAATTGGTGAGTGAAACTAAAAAGCTGCCTATTGTTGAGTCCTCGTCTTTGGCTTCCCTATGAGTAGATTTAGGTTTGGGACCACTGCACTAAATGAGCTCCAACCCACTATGTGATTATTAtgtttgtatgtgtctgtgtgtaagcgcagaggtgtgtgtgtgtgtgtgtgtatgactgaaAAGATGGACTGAGGTTTTGGTTGGACTTCATCTCAAAGCTGTGATAATTACTCTTATGCTAACTGTTGCCTAAAGTGGacaaaaatgttttatacaacaaaaaaatatgtaaatgaaAAGatacattaaaataaataaaacacaaacTCTGGTTTTGATTCTA
>XM_021566115.2
TGTCACAATGAGTATACGGTTACACTGTAGCATTCCTTACTCTATTGTTACTTTGTAACAAACCGGGGCAGAGGCGAGGAAAAGGAGGACGTCAATCTGGCAAAAATTCCGTAACATTTTGACATTACTGTACCAAACAAGGCGAAGAACTTAACGGTCATTATACTTGAAGAAAAACTGCATCGATCCGATTGAAACCACCATTCCAAAGAAAGGATAAACGAAACAGATGTCAGCGGATTGCTCTTCCAATGCAAGCATTGAAAGGCTCAAACCAGGAAGATAAGTCATCCAGCAGTTATCTCAAATTGTAACATCTTAAACAAAACGGATAATGTCAGTAGCCTAATAAATTTCAACCAAACTGTTTGACGTCCTTCTTTCCCACCGCCTGCCCCGGCTTTAGGATTGCTACGTCAAAGTTAAATGCACTCCTGGAAGCGACCATAAAATAAATGTCCTTTATGTAGTCAGTTAGTTCGTTACACTATTTCTGCATTACTAGGCTGACTATCACATAAATAAGTATTCCTACTGAATAAAGTAACTATTCGTTTTACTGTAGAAAGCTTTAGCCTACAACTAGAGAGAAGCTAAAACTGTCTGGGGAAAAATCTAAATAGGGCGTTTCAAGATCCAAGATCAATCCTCGGTGAATAAAAGGAACGTTCAGCGTTTTGATCGGGAGAAGAGGGTCCTTTTCTGCCGAAGACATCAAGTTTCCATGGAGGCAGTTTCGTCTCTCAGCCTCAAGCGAAGATTTGAGGAGGTGGACAGTGGCTCTCCCTACTCTACACCAAAGGACTCTGACGATGAAATATCCAGCAGTGACAGTGCTGACAGCTGTGATAGCCTCAACCCCCCCTCCAGCACTGCACTCACACCAACCTCCATCCTAAGACGGCACAAGCCCTCTCCAGGCCGGAAGCGGGTGCGGTTCGATGTGGTGACGGTGTACTACTTCCCCAGGCGGCAGGGCTTTACCAGCGTGCCCAGCCAGGGAGGCAGCTCCCTAGGCATGGCACGCCACCACTGCTCCATCCGCCGATACACACTGGGAGAGTTCGTCCGCGAGCAGGAGACCAGTCACCGCCACGCCCTGCGCCAACACCTCCGCCAGGAGAAGCTCAACGCTCGCAAGATAAAGCTGACGCGTAACGGTACGGTGCAGTGTGCCCAGGCTGACCTGCTGACCCTGGAGGACGTGTCAGACGACGACTTGGATGTAGAGGGTGTGGAGGTGGACGACTGCTTCTTCCTGCAGCCGCTTCCCACAAAGCGGCGTCGGGCAATGCTCAGGGCCTCCGGTATCGCCCGTATAGATGCCCGGGAGAAGGCTGAGCTACGGACCATCAGGCTGTCCAGGGAGGAGTGTGGCTGTGACTGCCGTTTCTACTGTGACCCCCGTCACTGTGGCTGCAGCCAGGCTGGCATCAAGTGCCAGGTGGACAGGATGTCTTTTCCCTGTGGCTGCTCTCGTGAAGGCTGTGGGAACTCAGCAGGCCGCATCGAGTTCAACCCTCTCCGCGTGCGAACACACTACATGCACACCATCATGAAGCTGGACCTGGAGAAGAGGAGGCTGCTGGGGCAGAAGGCAGGGGTCGGGGGGGAACAGTATGCAGAGTCTGACCTGCTCGCCTCCCCTTCCTCCACCAGGCCTCCCTCCCCAGACCCTGACCTGTCCACAGGGGCCAATGGCCTGGACTCTGAgttagagacagaggagagagaggtccagaTGGTCCTAGAGGCTCAGGACCTCCTGACTGACCAGGCCTGCCTCGAGCGTGAGAACGAGACCGCTGTGCTCCACCTGCAAAGTgcagaggagcaggagaggatgagggaggaagaggaggaggaggaggcacagCGGGGCAGGGGGGGAGCAGGGGGCCTGGGGGAGCAGGCTTTGTGCCTTCTGCCTGGGTCCCTGCAGGGGGAGATGCCTGGGGACACAGGGGTTGGGGTGGAGGGGGTCCCTATCTCCCTCCTCCAGGGCCCGTTCCCCACTGGGGCTACCCTGCTCTGCATCACAGAGAAccaggagggagatggggagggggacaACCCCTGTGGTGGCCTGAAAGACCCGGACTCCTCCCTGCTCTACTACCAGATAGGTCCCATGGAGAACGAGACGTTTCACAAGTCTCTGCCTGGGCAGGAGGAGGCGTGTGTAGAGCGAGAACCAGGGGGAGGAGAGCAGCAAGGGAGGGATGAGCATGGAGGTAATACCTGCGGGCAGGGTGAGGGCGAGTTTTCGCCCCCGGTGGCTCTGTGCTCAGAGAATGGCGTGGGTGCTAAGGAGTTACCATTCAGCCCCCAGCAAAGCTCCTTAGAAGGGCAGTGTCAGGAGGAGGCTTGCctggccacagaaggagagttgtaccCACCACTGCCCCCTGAGGTTTAGTACTAGCACCTCTGTCAATGTTTTGCACAATAGCTTCATTTTGAGCTGAATAAAGCCTacactacatggatagacaatgACTATGATGTTACAGGTTAGAATTCATATTAGTAACCGTCATTACTAGAAAAATCTATTTGGAAGAAATGAGCTTGACCATTAAAATAAAGTGAAGGAGGGAAAATCATCCTGAAAGCACACCCAGATCTTTCCCCTGCAGTAGTACTGTCAGTTCAGTTGTAAGTCAATGAAATGCTCTCGTTCTAACGGGGCTGGAGATCATGGgacctgtcccaaatggcacgctaatccctatatagtgcactacttttgtccagggcccataggactctggtcaaaagtagtgcactatgtagggaatacggtgccatttgggacgctacCTGGTTGGCATTAACGAAAGAAaggactgtaactcagtaactGAGAACTAAGTAGTGTTGTTTTTAGTTCACGGCACCACTAAGAGACGGTGTGGTGGTGTGAGTGTTAACATTTGCTCTTGGAGACGTTGGTCAAGGGAGCATTTCAGAATAATTCATAGGATTCCAGTGGCTTGATTAAAACAAGAAGGTGGGGTCAGGAAGAACATGTGCTCTGTTGTATACTGAGTGATACAATAAACACCAGTTGTGTTGAAAAAGTTTGACTAATTGGCTAGCATTGTAAATGTCACACTGGTCTGGTACACTTTTTCCAGCTGTTTAGTTGTAAGCTTGGAAGCCAAATTAGGGCCACTGGCagtatctacccccccccccccttcccgaCTGAGAATAGACCTAACAAACAATCCTGGAAATACTTGTTTTTGGTGTACTGTATAAGTGTTTGAAATGGGAAAGGCAGAGCTGAAAGAGCTGCTTGTTTGATCTTCATGTTGTGGTCTGTCTAGGAACTGGGTGGTATGTGCCCCTCGCTGCATTGAGGCAAAATGGTGAAACATTTGTAAAGATCAGAAGGTTTGCACCAGTTCCTCTTTCTAAATAGCGTCTCTCCGGGTCTACCTACCTTAGACCTCTCATGCAAACACAGTTTATTTATTAAAAGGCAAGTTTACCCTATAATAGTGACCATTACACTCTTCTGATGTTATGACACTTATTTTTAACAACGTGTCTTTGTGAAAATTGGGATGCTGTGGATATTGAGCAACAACGGAGGTCTCTGTGGTCTCTGTTTAATCAATGAATGAAAGGAAGCGGTCTTTGTTTTTTACTTAGCACGTCAGATGATCGTACAGGTGGTCAGAGTCCATGGGAAGTGGACCATGTAATGCTGACGGGACAAAATAGACCTGCTTTGTCCGTCAAGTCTTCACGTCACGAGTCTACAGGGGGATGCTCTGTGAAACACAGCTATTTTAAGTCATTACGGCATCatttaagaaatatatatataatttgagGACTTAAAAGAAACGGAAAGCCTAAAGCTGTTTGAAGTAGCAATACAGAACTACAGAATAATGATGTGATGTTGCTAAATTATGTAAAGAGGATATGACAAAACTTTAATTGCATTAGTTTTTGTTgagtgtgtatggatgtgtgtgcACGTTGTTTgattgtctttgtgtgtgtttgagattgttggggggggggggggggggggggggggcgtgcaTACAATTAGTCATATTTCCTAAAAGGTGCTGTGATAGGTTAAAACATGTGTAACTTTTTCTGAGGTTACGAGAAATGTATCATTTCAAGGACTACATGTATCTTGACGGACTTTGAATCACGGACATTTCTGATCGAAAGTTTGATCAGAAATCCACAGAAATGGCATTGAAACCAACCATTTCTGTGGCGAAGGGAAGCGTTACATTAAGCCCTCTGGACACAGGGATGCAATGGCTGTAGCACACTGTCTGCAAATTATGATACTTGCTTTGAATGACATATTGTATAGGTTGTCAGTATATGTAAATGCAATCCTATAACATATTTTGgtcttttaaatgtattttttgtgcTGTGTCTGTTCTTACTGGCCTATGTATGTGAGTGTGCCGACCCATCATGCACCACAGTCTTCATCCTCGCTTGACTGATCTATTTTAAAGCTTGCTGCCATCTTGCCCAGTGTATCATGTACTGTATTATGGGCCTAACTAACACAGGATGAGATGCTGTGCATGAGGTTTCTGATATGTCTTTTTGCCTTCATTTGTTGTGTTAGCAATATGATAATGCTTAAGAGTTGCACCAAAGCAGTGGTTTCGAACCTGACTCATTGCTGTCATCATGCACCCGTTTCTAGAAGATTCAATAGGAGTCTCCAGCTCTAATTCATTCTGAAGACTTGTGGTGATCTTCTCAATCAAATAGATGTATTTGACACCATTGCTTACCTTGACACAGTTCCAGCTTCTAAGTAATTGGTGAGTGAAACTAAAAAGCTGCCTATTGTTGAGTCCTCGTCTTTGGCTTCCCTATGAGTAGATTTAGGTTTGGGACCACTGCACTAAATGAGCTCCAACCCACTATGTGATTATTAtgtttgtatgtgtctgtgtgtaagcgcagaggtgtgtgtgtgtgtgtgtgtatgactgaaAAGATGGACTGAGGTTTTGGTTGGACTTCATCTCAAAGCTGTGATAATTACTCTTATGCTAACTGTTGCCTAAAGTGGacaaaaatgttttatacaacaaaaaaatatgtaaatgaaAAGatacattaaaataaataaaacacaaacTCTGGTTTTGATTCTA

Function

NR:

description
cysteine/serine-rich nuclear protein 2-like

GO: NA

KEGG:

id description
K17494 CSRNP; cysteine/serine-rich nuclear protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947024.1 False 4530 mRNA 0.49 5 45493913 45502617
XM_021566115.2 True 5168 mRNA 0.47 5 45493913 45505194

Neighbor

gene id symbol gene type direction distance location
LOC118939605 NA coding downstream 38297 45455562 ~ 45455616 (-)
itga5 LOC106567163 coding downstream 61109 45378265 ~ 45432804 (-)
slc48a1a LOC106567162 coding downstream 173537 45315947 ~ 45320378 (-)
LOC110492093 LOC106567160 coding downstream 178129 45308346 ~ 45315784 (-)
LOC110492092 LOC106567333 coding downstream 186376 45303720 ~ 45307537 (-)
LOC110492099 LOC106567167 coding upstream 885 45506079 ~ 45523249 (-)
pou6f1 LOC106567168 coding upstream 20793 45525987 ~ 45536632 (-)
LOC110492104 LOC106567172 coding upstream 42755 45547949 ~ 45559553 (-)
racgap1 racgap1 coding upstream 57275 45562469 ~ 45569735 (-)
LOC110492109 LOC106567177 coding upstream 111931 45613938 ~ 45627786 (-)
G1380287 NA non-coding downstream 90845 45402817 ~ 45403068 (-)
G1380277 NA non-coding downstream 105047 45388554 ~ 45388866 (-)
G1379089 NA non-coding downstream 256913 45236754 ~ 45237000 (-)
G1379076 NA non-coding downstream 266297 45227395 ~ 45227616 (-)
G1379060 NA non-coding downstream 280805 45212762 ~ 45213108 (-)
G1380361 NA non-coding upstream 39816 45545010 ~ 45545226 (-)
G1380386 NA non-coding upstream 98683 45603877 ~ 45604864 (-)
G1380346 NA non-coding upstream 140600 45645794 ~ 45646100 (-)
plxna2 LOC106567158 other downstream 529431 44621739 ~ 44964691 (-)
G1378530 NA other downstream 940366 44553014 ~ 44553547 (-)
G1377482 NA other downstream 1801075 43692320 ~ 43692838 (-)
G1376991 NA other downstream 2155358 43337162 ~ 43338555 (-)
G1380431 NA other upstream 199916 45705110 ~ 45705453 (-)
LOC110492748 ppdpf other upstream 911366 46416560 ~ 46419996 (-)
LOC110492764 fkb1a other upstream 1093503 46598697 ~ 46601691 (-)
LOC110492767 LOC106572444 other upstream 1152273 46657459 ~ 46668762 (-)

Expression


Co-expression Network