LOC110492099 (LOC106567167)


Basic Information

Item Value
gene id LOC110492099
gene name LOC106567167
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 45506079 ~ 45523249 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566116.2
TATCATAGAAGAAGAATAAGCTTTCTAGCCGAGTAGATAAACAAACTTTTTATTAGGTTTGTATGCAGATTTAATTAACTACCATATACAACTCAATTAGTTCTCGTTATATTCAAATAATCAGTGTTCACATCGCTGTTTCCCTGAAGAGTAGTAGCGCATGTTGGAGATAGTTAGCTAACGTTGGTTATCTCAATATGGAGAGAACGAGGGAGCAACATGGCATGCAATGGTCGCAGGGTTAGCTAGTCAACTTACTTGGTTTTAAAGTTTGGTAGCAAAAGACATCTACCAGGCTGTAAGAAATTTGCAGTTTGGAATTTTGTGGCCAGGGATCGAGAATTTGAGACAAGTTCGACTGCAATCAGATCCACGCGTCGTCATGGCTTGGGCTCTGAAACTGCCACTCACTGATGAGGTGATTGAATCAGGTCTGGTCCAAGACTTTGATGCCAGTCTCTCTGGCATTGGACAAGAGCTTGGAGCTGGGGCGTACAGTATGAGCGACGTGCTGGCCCTCCCCATCTTTAAGCAGGAGGAGTCTAACCTACCGCCTGACAGTGAGAACAAGATTCTTCCTTTCCAGTATGTTCTGTGTGCAGCTACCTCACCTGCTATCAAACTGCACGATGAAACACTTACCTACCTCAACCAAGGACAGTCTTATGAAATTCGAATGCTTGACAATCGGAAATTGGGTGAACTCCCAGAAATCACTGGCAAAATGGTGAAGAGCATCATCCGCGTGGTCTTCCATGACCGGCGTCTTCAGTACACAGAGCACCAGCAGCTGGAGGGCTGGCGCTGGAACAGGCCTGGAGACCGCATCCTCGACCTGGATATCCCCATGTCAGTTGGCATGGTCGACCCCAGGGCTAACCCTACTCAACTTAACACTGTGGAGTTCCTGTGGGACCCTTCAAAAAGAACCTCGGTTTTTATCCAGGTTCACTGCATCAGCACAGAGTTCACTATGCGGAAGCACGGGGGAGAGAAGGGCGTGCCTTTCCGCATCCAGATCGACACTTTCAAAGAGAATGATGGCGAAGAGTATTCAGAGCACTTGCATTCTGCCAGCTGTCAGGTCAAAGTCTTCAAGCCTAAAGGTGCAGACAGGAAGCAGAAGACCGACAGAGAGAAGATGGAAAAGAGGGCTCCTCAGGAGAAGGAGAAATACCAGCCCTCGTATGAAACCACCATCCTAACAGAGTGCTCTCCCTGGCCAGAGGTCACCTATGTAAATAACTCTCCATCGCCTGGCTTCAACAGCTCACACAACAGTTTTCCAGTGGCAGAGGGCAATGGATCCCCCAGTCACCAGCCAGAGCTAGTTGTTCAGGTAGCAGATATTGAAAGCTGTCTGACTGATACAATTTTGCCATCCCATCTACTTACAAGAGACGGTGAAAGCATCCATCAGAACCTGTTACCCGCGGCAACACCACAGGATGCACAGCAGTGGCTCCATAGAAACCGCTTTTCACCGTTCTGTCGGCTCTTCACTAATTTCTCAGGAGCTGATCTGTTGAAGCTGACCAGGGAAGATGTCATTCAAATATGTGGGCCAGCAGATGGTATTAGGCTCTTCAACGCGTTGAAGGGACGGGTGGTACGTCCCAGGCTGACGGTGTATGTGTGCCAGGAATCCCAGCAGGCTCGGGAACAGCAGCAGAAACACGACAACGGAGACGCAGCTAGCAGTACTTTTTTCGTGTACCATGCCATCTACTTGGAGGACTTGACAGCAGTTGAGCTGACAGAGAAGATCGCTCAGCTCTTCAACATCTCACCCAGACAGATCAGTCAGATCTTTAAACAGGGATCCACTGGTATACATGTCCTGGTCAGTGACGAGATGATTCAAAACTTCCAGGATGAAGTATGTTTTGTTTTGGATACAATGAAAGccGAGACGAACGATGGCTACCACATCATCCTGAAATGAAAACTGTCTGGGGGATTGTCTAGCCCCCGCTCTCTCCTGACACCCAACCCTGCCAGCCCCTCTACAGCCTTAGCCCCTGATGTACCTGGACCATGCTAAAGATGACCCGATCGTTTCGCTCAACGATTCTCTAGAGGCTGCTCGCTACGGGGAACATTCTGACTGAAGCACCTTGCCCATTCTCGATACCTTATTGTCTTATTTGAAAGGAGTGACACTATTTGAGCTGCCATATCGATGCAACTCTCCAGTCTCCTCCCATGCTAAAAACACTTTTTAAATGGTTGCATTTTCCTGCTTTGTTGCTCATGTGTTTGAAAAAGAGAATGGAAGACACCCTGTCACTGCTTCAGAATCAACGACTTTGCTGTCTCGTCTTTAGAATCCAGTCTTGCATGGAAAGGGATCCACAACAAGAGATGCAGAGTGCTTATGGTCTCCGGTCTCCATCTCCTCCTACTAGGCTGCTAGACATCAAGGAGTCTTTTTGTGAGCACCGTGGTCATGGTTAAGTAGCTACGACAACAAAGCTTGCACAGGATATAAAATCTTAACTAGGTTAAAGATACTAAAGGGTTCTAATATCCCATAATTTTTTTCATAAATGCGGAAGCATTCTAGACCACGGGACCAGCAATGTGAACGAAAATGACTGGAAGCAGTACAAAAagtgtaaaaataaaaacaattgtagaGAATTTATTCAGCAAGCACATAGCATAACTGTTTTTCAAAGGATCTACAGCCATTTTATTGCTTGGATTTCCTGACCGCTGGTCATGTTTTCGATGCTAATCCTGTGGAATCCAACAGCGGCGCTGGTCCCAGGAATTTGTTTATTTGGAATTATCCAGGTTAGGACAATGTAATGTCTTCAACCTAAAATCTTAACCGGAAGTGATGTcataatggaaaatgaaagggacACCTGCAGCATATATGAGATCCCCTCTGTTCTCCCAGTGAGCGCTGTGCTCCTGAAAGCCCGCATCTGTCAAGTTGTATTTGTGTCGTCCATCTGTGCAACTTTTCTAGGTCTTTAATCACTGTCAAGACCGTGTCAGTATACTGTTCTGTTCATGCCTCCCCCTTATTCATTAAACTGATTGATATCACTTTCTTTATTGACCACACAAGGTGGCAACACCAGCAACCTACTACTCGGTCTTGCCCGCTATCCCTATATACCCTTTATACCGTTATACTGTATCACTTTACAGTGTCATTAAGATGGTTTTGGACaatttaacttttttttgtaGTAGATGGTTGTTTAAAAGTGTGAATTTTGAATCATGTTTTaatgtttttataaatgtgtAAACAGACTTGTTCTACCTTTGTTTAAAGAGAAGCAGTCTACATTGTTTTGGGATATTACCACTATCAAGTATTAAtatatagtagtgggttgtttaGGGTATACCAAAGCTAGATGTTGCCCACCGTTGCCCCTCATCCAAGTCATCAGAACGATTAAACTACTTACCCATA
>XM_021566117.2
TATCATAGAAGAAGAATAAGCTTTCTAGCCGAGTAGATAAACAAACTTTTTATTAGGTTTGTATGCAGATTTAATTAACTACCATATACAACTCAATTAGTTCTCGTTATATTCAAATAATCAGTGTTCACATCGCTGTTTCCCTGAAGAGTAGTAGCGCATGTTGGAGATAGTTAGCTAACGTTGGTTATCTCAATATGGAGAGAACGAGGGAGCAACATGGCATGCAATGGTCGCAGGGTTAGCTAGTCAACTTACTTGGTTTTAAAGTTTGGTAGCAAAAGACATCTACCAGGCTGTAAGAAATTTGCAGTTTGGAATTTTGTGGCCAGGGATCGAGAATTTGAGACAAGTTCGACTGCAATCAGATCCACGCGTCGTCATGGCTTGGGCTCTGAAACTGCCACTCACTGATGAGGTGATTGAATCAGGTCTGGTCCAAGACTTTGATGCCAGTCTCTCTGGCATTGGACAAGAGCTTGGAGCTGGGGCGTACAGTATGAGCGACGTGCTGGCCCTCCCCATCTTTAAGCAGGAGGAGTCTAACCTACCGCCTGACAGTGAGAACAAGATTCTTCCTTTCCAGTATGTTCTGTGTGCAGCTACCTCACCTGCTATCAAACTGCACGATGAAACACTTACCTACCTCAACCAAGGACAGTCTTATGAAATTCGAATGCTTGACAATCGGAAATTGGGTGAACTCCCAGAAATCACTGGCAAAATGGTGAAGAGCATCATCCGCGTGGTCTTCCATGACCGGCGTCTTCAGTACACAGAGCACCAGCAGCTGGAGGGCTGGCGCTGGAACAGGCCTGGAGACCGCATCCTCGACCTGGATATCCCCATGTCAGTTGGCATGGTCGACCCCAGGGCTAACCCTACTCAACTTAACACTGTGGAGTTCCTGTGGGACCCTTCAAAAAGAACCTCGGTTTTTATCCAGGTTCACTGCATCAGCACAGAGTTCACTATGCGGAAGCACGGGGGAGAGAAGGGCGTGCCTTTCCGCATCCAGATCGACACTTTCAAAGAGAATGATGGCGAAGAGTATTCAGAGCACTTGCATTCTGCCAGCTGTCAGGTCAAAGTCTTCAAGCCTAAAGGTGCAGACAGGAAGCAGAAGACCGACAGAGAGAAGATGGAAAAGAGGGCTCCTCAGGAGAAGGAGAAATACCAGCCCTCGTATGAAACCACCATCCTAACAGAGTGCTCTCCCTGGCCAGAGGTCACCTATGTAAATAACTCTCCATCGCCTGGCTTCAACAGCTCACACAACAGTTTTCCAGTGGCAGAGGGCAATGGATCCCCCAGTCACCAGCCAGAGCTAGTTGTTCAGGTAGCAGATTTGCCATCCCATCTACTTACAAGAGACGGTGAAAGCATCCATCAGAACCTGTTACCCGCGGCAACACCACAGGATGCACAGCAGTGGCTCCATAGAAACCGCTTTTCACCGTTCTGTCGGCTCTTCACTAATTTCTCAGGAGCTGATCTGTTGAAGCTGACCAGGGAAGATGTCATTCAAATATGTGGGCCAGCAGATGGTATTAGGCTCTTCAACGCGTTGAAGGGACGGGTGGTACGTCCCAGGCTGACGGTGTATGTGTGCCAGGAATCCCAGCAGGCTCGGGAACAGCAGCAGAAACACGACAACGGAGACGCAGCTAGCAGTACTTTTTTCGTGTACCATGCCATCTACTTGGAGGACTTGACAGCAGTTGAGCTGACAGAGAAGATCGCTCAGCTCTTCAACATCTCACCCAGACAGATCAGTCAGATCTTTAAACAGGGATCCACTGGTATACATGTCCTGGTCAGTGACGAGATGATTCAAAACTTCCAGGATGAAGTATGTTTTGTTTTGGATACAATGAAAGccGAGACGAACGATGGCTACCACATCATCCTGAAATGAAAACTGTCTGGGGGATTGTCTAGCCCCCGCTCTCTCCTGACACCCAACCCTGCCAGCCCCTCTACAGCCTTAGCCCCTGATGTACCTGGACCATGCTAAAGATGACCCGATCGTTTCGCTCAACGATTCTCTAGAGGCTGCTCGCTACGGGGAACATTCTGACTGAAGCACCTTGCCCATTCTCGATACCTTATTGTCTTATTTGAAAGGAGTGACACTATTTGAGCTGCCATATCGATGCAACTCTCCAGTCTCCTCCCATGCTAAAAACACTTTTTAAATGGTTGCATTTTCCTGCTTTGTTGCTCATGTGTTTGAAAAAGAGAATGGAAGACACCCTGTCACTGCTTCAGAATCAACGACTTTGCTGTCTCGTCTTTAGAATCCAGTCTTGCATGGAAAGGGATCCACAACAAGAGATGCAGAGTGCTTATGGTCTCCGGTCTCCATCTCCTCCTACTAGGCTGCTAGACATCAAGGAGTCTTTTTGTGAGCACCGTGGTCATGGTTAAGTAGCTACGACAACAAAGCTTGCACAGGATATAAAATCTTAACTAGGTTAAAGATACTAAAGGGTTCTAATATCCCATAATTTTTTTCATAAATGCGGAAGCATTCTAGACCACGGGACCAGCAATGTGAACGAAAATGACTGGAAGCAGTACAAAAagtgtaaaaataaaaacaattgtagaGAATTTATTCAGCAAGCACATAGCATAACTGTTTTTCAAAGGATCTACAGCCATTTTATTGCTTGGATTTCCTGACCGCTGGTCATGTTTTCGATGCTAATCCTGTGGAATCCAACAGCGGCGCTGGTCCCAGGAATTTGTTTATTTGGAATTATCCAGGTTAGGACAATGTAATGTCTTCAACCTAAAATCTTAACCGGAAGTGATGTcataatggaaaatgaaagggacACCTGCAGCATATATGAGATCCCCTCTGTTCTCCCAGTGAGCGCTGTGCTCCTGAAAGCCCGCATCTGTCAAGTTGTATTTGTGTCGTCCATCTGTGCAACTTTTCTAGGTCTTTAATCACTGTCAAGACCGTGTCAGTATACTGTTCTGTTCATGCCTCCCCCTTATTCATTAAACTGATTGATATCACTTTCTTTATTGACCACACAAGGTGGCAACACCAGCAACCTACTACTCGGTCTTGCCCGCTATCCCTATATACCCTTTATACCGTTATACTGTATCACTTTACAGTGTCATTAAGATGGTTTTGGACaatttaacttttttttgtaGTAGATGGTTGTTTAAAAGTGTGAATTTTGAATCATGTTTTaatgtttttataaatgtgtAAACAGACTTGTTCTACCTTTGTTTAAAGAGAAGCAGTCTACATTGTTTTGGGATATTACCACTATCAAGTATTAAtatatagtagtgggttgtttaGGGTATACCAAAGCTAGATGTTGCCCACCGTTGCCCCTCATCCAAGTCATCAGAACGATTAAACTACTTACCCATA

Function

NR:

description
transcription factor CP2-like isoform X2

GO: NA

KEGG:

id description
K09275 TFCP2; transcription factor CP2 and related proteins

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566116.2 False 3439 mRNA 0.45 18 45506079 45523249
XM_021566117.2 True 3412 mRNA 0.45 17 45506079 45523249

Neighbor

gene id symbol gene type direction distance location
csrnp2 LOC106567166 coding downstream 885 45493913 ~ 45505194 (-)
LOC118939605 NA coding downstream 50463 45455562 ~ 45455616 (-)
itga5 LOC106567163 coding downstream 73275 45378265 ~ 45432804 (-)
slc48a1a LOC106567162 coding downstream 185703 45315947 ~ 45320378 (-)
LOC110492093 LOC106567160 coding downstream 190295 45308346 ~ 45315784 (-)
pou6f1 LOC106567168 coding upstream 2738 45525987 ~ 45536632 (-)
LOC110492104 LOC106567172 coding upstream 24700 45547949 ~ 45559553 (-)
racgap1 racgap1 coding upstream 39220 45562469 ~ 45569735 (-)
LOC110492109 LOC106567177 coding upstream 93876 45613938 ~ 45627786 (-)
LOC110492110 LOC106567179 coding upstream 129946 45653195 ~ 45658491 (-)
G1380287 NA non-coding downstream 103011 45402817 ~ 45403068 (-)
G1380277 NA non-coding downstream 117213 45388554 ~ 45388866 (-)
G1379089 NA non-coding downstream 269079 45236754 ~ 45237000 (-)
G1379076 NA non-coding downstream 278463 45227395 ~ 45227616 (-)
G1379060 NA non-coding downstream 292971 45212762 ~ 45213108 (-)
G1380361 NA non-coding upstream 21761 45545010 ~ 45545226 (-)
G1380386 NA non-coding upstream 80628 45603877 ~ 45604864 (-)
G1380346 NA non-coding upstream 122545 45645794 ~ 45646100 (-)
plxna2 LOC106567158 other downstream 541597 44621739 ~ 44964691 (-)
G1378530 NA other downstream 952532 44553014 ~ 44553547 (-)
G1377482 NA other downstream 1813241 43692320 ~ 43692838 (-)
G1376991 NA other downstream 2167524 43337162 ~ 43338555 (-)
G1380431 NA other upstream 181861 45705110 ~ 45705453 (-)
LOC110492748 ppdpf other upstream 893311 46416560 ~ 46419996 (-)
LOC110492764 fkb1a other upstream 1075448 46598697 ~ 46601691 (-)
LOC110492767 LOC106572444 other upstream 1134218 46657459 ~ 46668762 (-)

Expression


Co-expression Network