LOC110492133 (LOC105022328)


Basic Information

Item Value
gene id LOC110492133
gene name LOC105022328
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 46115201 ~ 46122881 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566169.2
tatatattttttaaacgccTCTTTCGTTGCGTTATTATTGAGGGTGGGTAAATCTCGAGCAAGCGcgttcccatctctccgctccccTTTAACCAACCATGGTTACGTGTGCGCTCCCGCTACTAAGCGACAAGATGGCGGTCGCCGCCGGATCAGGCGTTAAGGTTCCTCGTAACTTCCGGCTGCTTGAAGAGCTGGAAGAAGGTCAGAAAGGTGTGGGGGATGGGACAGTGAGCTGGGGATTGGAAGATGATGAGGACATGACCTTAACAAGATGGAGAGGGATGATCATTGGCCCTCCTAGGACAATCTATGAAAATAGGATGTACAGTCTGAAGGTTGAATGTGGTCCCAGATATCCAGAGGCACCACCGTTTGTCAGATTTGTGACTAAGATCAACTTGAATGGTGTGCACAACTCCAATGGCGTGGTTGACACACGAGCAGTGTCTGCGCTGGCCAAGTGGCAGAACTCATACAGCATCCGTGTGGTCCTGCAGGAGCTCAGACGACTCATGATGTGCAAGGAGAACATGAAGCTCCCCCAGCCACCAGAGAGCCAGATCTACACCAACTGAACCCATGTTACTactctcctccttttccccctcTTTTGTTTTCAGTCATCCTTTCACCCCATCtaccacctccctccttttttcATTCAGGTGCCTGCCAACACTCAagcgtacatacacacacacacacagatatagggacctacaTGTATGCACGTGTACATAAACACATAGACATAGGAACATACATGTGTGCGAACGTATATGCTGACACACAAACATGCAATCACTTCTGTATGCGCCATTCCTAGGCCCTGGCCCCTCCCCTCTTCCATCACTGGAGCTCTGGTTGGCCTAAAGAAGACGAGGCAGGCGGAGTCATCGGTCCACACCAGGCCTTaatctttttttattattattggtTATAAATGCAGATTGTACAATAACATAAATAATCTCGAGTGTACATTTTGTGTGCTGCCTTTTTGTAATAGAGAAAGAACCCCAGCCTGTCAACAGTTTCCTTGTTTATAATTATAATCCACCAATTATGCGAGTAtttgtggatgttgtttagtgCAATATATAAATGAGATACATTTTCTTATCAGGTTCTAAACATAAAGATCAACCAGTCAATTACCTTACCTCCCCATTGATTTCGAGAGCTTGACCCAACAAATATGTGAAAATATTTAGTGTTTTTCTGGGCTTTGTGCATGTTTGTATATAGAATAGCATATTTACCATATCCACTGGAAATGCATGTGACTGCAGCAGCTTATGGCAAGATGCCTGAAGTAGTAAGGCCTTCATGCTGTCACTTTGGTCAACACTTGCGTGGCCATGACAGAAGCAACCACTGATATTTCGCCTCCCATATCCAGTAATGTTTTAGTTCAGAAGTGTAATTGAGTGTATAAACTCAATACAATAAAATATGCCATCTGATAGGGTTCACACAGCAGAGAACTTGAGTTAGCTACCTCTTTCGTGGCGTTAGTTATAGGAGAGTAGAATTGACCGTTTTCTTCCCCCATAAATCTTGCATCATGCCTTCACAATTGTGTATAGTGTCCAGAGTCCTATGGTTCTAACCCCCTGCAGCCATTTCCCATGTTTGTCTTAGCTTACTAGAGTCATTGGGTGTAAGGTCATTCATACACTGTTAGTATGGGTTATGAAACTACAGTGATTGTACTTTTACACTATCTTTGTCATGATCTTATGTATAGTGTTTACGTCTGTTCCCTTTGAGTGAGCTTACCTAACATGCAGTAAATCTCAGTGTGACCAGT

Function

NR:

description
ubiquitin-conjugating enzyme E2 variant 1-like isoform X1

GO:

id name namespace
GO:0070534 protein K63-linked ubiquitination biological_process
GO:0035370 UBC13-UEV1A complex cellular_component
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566169.2 True 1816 mRNA 0.44 4 46115201 46122881

Neighbor

gene id symbol gene type direction distance location
slc52a3 slc52a3 coding downstream 3986 46103115 ~ 46111215 (-)
scrt2 scrt2 coding downstream 54319 46051699 ~ 46060882 (-)
srxn1 srxn1 coding downstream 75167 46037962 ~ 46040034 (-)
tcf15 LOC106567197 coding downstream 87460 46025766 ~ 46027741 (-)
LOC118939542 LOC106567195 coding downstream 102091 46007696 ~ 46013110 (-)
peds1 tm189 coding upstream 6790 46129671 ~ 46134746 (-)
LOC110492134 LOC106567201 coding upstream 28716 46151597 ~ 46165561 (-)
LOC110492740 LOC106567210 coding upstream 157447 46280328 ~ 46284105 (-)
LOC110492742 LOC106567211 coding upstream 164356 46287237 ~ 46293439 (-)
LOC110492744 LOC106567213 coding upstream 194963 46317844 ~ 46330626 (-)
G1380637 NA non-coding downstream 17061 46097669 ~ 46098140 (-)
G1380636 NA non-coding downstream 17932 46097029 ~ 46097269 (-)
G1380634 NA non-coding downstream 19495 46095120 ~ 46095706 (-)
G1380632 NA non-coding downstream 21652 46093333 ~ 46093549 (-)
G1380620 NA non-coding downstream 39165 46075821 ~ 46076036 (-)
G1380585 NA non-coding upstream 4513 46127394 ~ 46127642 (-)
G1380645 NA non-coding upstream 13719 46136600 ~ 46136833 (-)
G1380584 LOC100136165 non-coding upstream 14150 46137031 ~ 46138625 (-)
G1380646 NA non-coding upstream 16902 46139783 ~ 46140126 (-)
G1380647 NA non-coding upstream 18333 46141214 ~ 46142075 (-)
G1380431 NA other downstream 409748 45705110 ~ 45705453 (-)
LOC110492109 LOC106567177 other downstream 487503 45613938 ~ 45627786 (-)
slc48a1a LOC106567162 other downstream 794823 45315947 ~ 45320378 (-)
plxna2 LOC106567158 other downstream 1150719 44621739 ~ 44964691 (-)
G1378530 NA other downstream 1561654 44553014 ~ 44553547 (-)
LOC110492748 ppdpf other upstream 293679 46416560 ~ 46419996 (-)
LOC110492764 fkb1a other upstream 475816 46598697 ~ 46601691 (-)
LOC110492767 LOC106572444 other upstream 534586 46657459 ~ 46668762 (-)
LOC110491077 LOC106567232 other upstream 636406 46724969 ~ 46761466 (-)
G1381036 NA other upstream 755730 46878611 ~ 46879146 (-)

Expression


Co-expression Network