LOC110492134 (LOC106567201)


Basic Information

Item Value
gene id LOC110492134
gene name LOC106567201
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 46151597 ~ 46165561 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566170.2
AGGAGGAGCGTAACGGCGTGTTTCCGGTAAAACCAGGCCGAGAGAGAAAATAGTAACAGTAATCTATGTAGCTActgaaaataaaaaacagtataGAAAGAGTTGTCCACTTTGTTGGACAACGTCTGTCCAATTTGCCTAACCTTTACAAATAGATATCGATTGGTCGTCGGGAAAAGAGTCGGCTGTAGCAAGGCAATGGAAGCCGAGTTTCGGAAAATCGATGAACCCGGGAGTTGGAACGCCATTTACCAGGAAATCCGTCAGCAATCAAGTGAGCTGCCCTGCAAACTTGCCAAATTACCTGAAAACAAAACTCGGAATCGCTACAGAGATGTCAGCCCATTTGACCACAGCAGAATCCGCCTGCAACTGGGTGCGAACGACTACATTAACGCCAGCCTAATTTCTGTAGACGAGGCACAGAGAAGCTACATTCTTACTCAGGGACCCCTTCCAAACACATGTGGCCACTTCTGGGAGATGGTTTGGGAGCAGGGGACCATGGGAGTGGTGATGCTGAACCGTGTCATTGAGAAAGGATCTGTGAAGTGTGCACAGTACTGGCCACCTAGAGCGGAGAGGGAGGCGATCTTTGAAGACACAAATTTCAAGCTTACACTTGTTTCAGAAGACATTAAGTCTTACTACACTGTTCGTCAGCTGGAGCTGGAAAATCTGTCGACTCTGGAAACTAGAGAGATCCTACATTTTCACTACACCACCTGGCCTGACTTTGGGGTGCCCGAATCTCCAGCCTCCTTCCTCAACTTCCTGTTTAAGGTGCGGGAGTCTGGGTGCCTCAACTCTGACCAGGGGCCTGTGGTGGTGCACTGCAGCGCAGGCATCGGCCGCTCTGGAACCTTCTGTCTCGTCGACACCTGCCTCTTACTGATGTCCATGCGCAAAGACCCATCAACTGTGCGTATTCGTGACGTGCTGCTGGAGATGCGACGCTATCGGATGGGCCTGATTCAGACCGCTGACCAACTCAGATTTTCCTACCTCGCTGTTATTGAAGGTGCCAAGTGCATCATGGGAGACACATCGTTGCAGGAGTCGTGGAAAGAGCTCTCCAACGAAGAGGACGTTCCTCCAGAGTTCACCCCTCCCCCGCCCCACTCCCGACCCCAAGGTCCAATCAACGGCACGGTTGAACCTTCCTTCTTTCCTGAAGAGATTGTTGTTGCGCAGAATAATTTCCACACTCGCAGTGCCCCACCAGAAACTGAACTGCGATGGAGGGGCGGTGGTGATGGTGCTACCTCCCAGTCTCCCACTGTCCCCGCTGATCAACCTGGCTGCCAGGTGGGAAGCAAAGAACCAGATCCCAAAGCTCTGATGGAACCACACCGGCTGCATGAGACTGAAACACAACAGGGGCTGAACCAGGACCAGGAAACAGCAGCAGGAGACGACAGCCTTGAGGCTCAGGGTGCCTGGACCCCCCTGCTGGCCAACATGTGCCTCTGCACTGCCCTGGCCCTGGGTGCTTACATCTGTTACCGGGCCTGTTTCCACTgatctcctctaccctcctccctctcttgctcctccCTTTCTCTTGTCTGTTTTTTTGCAGGGTGAACTGGGCGAGTGGATTGTTTGGATTTCAGCAAATTGATTGATTCAGACTCACTCACTTGTTTTCTTAACAGAGCGTGAGTGTGGGAGGAAGGACCGGACCGCCCCTTTTCCCTTGTCACCCACCGTAGCGCCCATATGAACTGTCAGTTTGGACTCTCAGGACCTCAATTTTCAGGTGTCGcatcccaaatacaggtgttgaTTTAAAATCAAATGAGTGAACAACAATTTTTCATCATAGTGTGTTTGTTCCTGTGTTCTATGAGCTGAATGGTTTACTAGTTGACCCTACCTACACACATGCACCCTCTATTCAGTTACCAAATGACACACTCATAAGTGTTCTTCCAATTCAGCCTTTGCAAATAATGTCCATTGGCTATTCACCTTTCTCTACCAAATAGTTATTTCAATCCAGCTCTTCAAATAAAAAATTGGTCAAGAGAAGTTACTCAGTGCTTGATTTGTGGCAACCCTGCAGTGCCAACATAATGATTTTCTGCGGAGACATTAGTAAAAAGAAAACAGACAAACTTAATTTTTCTCCTTGAGATGATTGGGCAGTATTATTCCCAGGAGTAAACTGAGACTAGGGGGTGGCcactgtctgagagagagactgcCCTCCCTGCCTTCCACTGGTTGAGTGGTGCATACAGTGGGTAATTTACAGGCCATAGGAGAGCTCCCTACCACTGCCCTGTTTAGGGCCTTTTGGCTAgagctgagtgagtgagtgggcaaGCGAGCGAGTGTTTAGTGAGAGTTAACAGCTTTCTAATTATGCTTGATTTCTATCTGCTGTCTTAGTGGAAAACATCACAAGTTAATAATACAAGTCAGATTTGAAATGTATTCAAGATTGATTCCTGGCCCTTTTCTCTCCCACCGCGTATTCGTTCCTAACTTGACATTTAAGCAGGAGTGTCTTGTTGATAATGTGCTTTGAATGGAAATGCCGCACACATGTATTGAGCTGTTCTGGCTGGCCTAGTTTGAGACGCTGTATTCACATTTAGCCTGTTTCAAAAAGTGGTTCCAGCTAACGCTGATGTACAAATTCCAAAATGAGTCTCCAATGATTTCGCAACAATTTGTTATTGTTGTCAAACCTATTAAATATATCATTCAGGGATAGTAACTTCTTGCTGTCACCACATTGGATGAATAATGCAGAAGCTTTTCATGCTAAAGAAACAAAGTGaatgtgtaaggaggaggggaatGCATCAGGTGAGCGTTGCATAGTAATTAAAGAGCAGGTATCTGAACACAGGAGGCTGCATTAACGCACAAAAATGCCAGCTCAGCCTACTATATGGAGACACAGACAGCAGCTAACCCTACGCTCCCTTCGCTAGCAATACAAATACTTTATATTTACCTTTATTTTCCCCATCCTCTGACAGCTAAACCCATCCTGCCTGTATGGACAGGGAGCCTGGGGTCTCAAACCAACCAACAAACACCAGCACATGGAATAAAACACTGTAGTGGTGATCAGTTATATTATGTTATGGCATGGGACTGTGCTGTTGAGTTTGTTCTTATTACTTTTTTTCCCACATAAACATCCTGCAGTTTTGAATAAACAGGTTTTTAATGAGATTAGTTCAACTGCTAGTTTAATTTACTTTAGTGACTCAAAAAGAACTACTTACTTCCTGAGTCCAACAGCTGTACTTTTTCTCTAGAATGTATGAAAGCCTACCCAAGGACACACCTTCTTGATACTTTTTTCAGATCAGGTTTCATTGTGCtggcttttttttcttttttacatcCATCATTGTATtccttttttaataaaaaaaaatgtactgctGATTTGTTCTAGTTTTTGGATCTGAGTCAATTGTAAGATTTTATTTTATCAGACTGAATTCTAAACAAAGGCTGTGGTAATAAAATCGGTCTCTGTA

Function

NR:

description
tyrosine-protein phosphatase non-receptor type 1-like

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K05696 PTPN1, PTP1B; tyrosine-protein phosphatase non-receptor type 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566170.2 True 3509 mRNA 0.46 9 46151597 46165561

Neighbor

gene id symbol gene type direction distance location
peds1 tm189 coding downstream 16851 46129671 ~ 46134746 (-)
LOC110492133 LOC105022328 coding downstream 28716 46115201 ~ 46122881 (-)
slc52a3 slc52a3 coding downstream 40382 46103115 ~ 46111215 (-)
scrt2 scrt2 coding downstream 90715 46051699 ~ 46060882 (-)
srxn1 srxn1 coding downstream 111563 46037962 ~ 46040034 (-)
LOC110492740 LOC106567210 coding upstream 114767 46280328 ~ 46284105 (-)
LOC110492742 LOC106567211 coding upstream 121676 46287237 ~ 46293439 (-)
LOC110492744 LOC106567213 coding upstream 152283 46317844 ~ 46330626 (-)
LOC110492745 mare1 coding upstream 165293 46330854 ~ 46337487 (-)
LOC110492746 LOC106567215 coding upstream 175519 46341080 ~ 46371222 (-)
G1380647 NA non-coding downstream 9522 46141214 ~ 46142075 (-)
G1380646 NA non-coding downstream 11471 46139783 ~ 46140126 (-)
G1380584 LOC100136165 non-coding downstream 12972 46137031 ~ 46138625 (-)
G1380645 NA non-coding downstream 14764 46136600 ~ 46136833 (-)
G1380585 NA non-coding downstream 23955 46127394 ~ 46127642 (-)
G1380671 klhl12 non-coding upstream 11727 46177288 ~ 46177878 (-)
G1380711 NA non-coding upstream 77322 46242883 ~ 46243173 (-)
G1380682 NA non-coding upstream 83174 46248735 ~ 46253139 (-)
G1380719 LOC106567209 non-coding upstream 108525 46274086 ~ 46274934 (-)
G1380720 NA non-coding upstream 111147 46276708 ~ 46277038 (-)
G1380431 NA other downstream 446144 45705110 ~ 45705453 (-)
LOC110492109 LOC106567177 other downstream 523899 45613938 ~ 45627786 (-)
slc48a1a LOC106567162 other downstream 831219 45315947 ~ 45320378 (-)
plxna2 LOC106567158 other downstream 1187115 44621739 ~ 44964691 (-)
G1378530 NA other downstream 1598050 44553014 ~ 44553547 (-)
LOC110492748 ppdpf other upstream 250999 46416560 ~ 46419996 (-)
LOC110492764 fkb1a other upstream 433136 46598697 ~ 46601691 (-)
LOC110492767 LOC106572444 other upstream 491906 46657459 ~ 46668762 (-)
LOC110491077 LOC106567232 other upstream 593726 46724969 ~ 46761466 (-)
G1381036 NA other upstream 713050 46878611 ~ 46879146 (-)

Expression


Co-expression Network