LOC110492740 (LOC106567210)


Basic Information

Item Value
gene id LOC110492740
gene name LOC106567210
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 46280328 ~ 46284105 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567200.2
ATGTTTTGAAATGCATGGATTTATTTTGAAGGTTTCGTCATTACCACAACAACGTGATGTTCTCGTTTGTGCTGCTGGCAGAATGCTAATAGTCTCTAGTAGCTACTGGTGCAATCTGATTCCAAGGCCATCTCGCATCTTCGATCTCAAAGTAAAATATCATCATCATGTCGGGAGCTCTGTTTCCCAGTCTGGTGTCGGGGTCCCGCGGCTCCTCTAGCAAATTCCTGGTTGAGTTTCGGGCCGGGAAGATGACCATGAAGGGTAGCACGGTGACTCCAGACAAGCGCAAGGGACAAGTCTATGTTCAGCAAACCGACGACTCCCTCATTCATTTCTGTTGGAAGGATCGGACCTCTGGAAACGTGGACGATGACCTGATCATCTTCCCAGATGATTGTGAGTTCAAGAGAGTGAACCAGTGCACAACTGGTCGGGTGTTTGTGCTGAAGTTCAAGGCTGGCTCCAAGAGGCTGTTCTTCTGGATGCAGGAGCCCAAAACTGAAAAGGACGAGGAGTACTGTCGTAAAGTGAATGAGTATCTGAACAACCCTCCCATGCCTGGGGCCCTTGGCAGTGGAGGCAACAGCGGGCATGAACTGTCTGCTCTGGGGGGTGAGGGTGGACTGCAGAGTCTGCTCGGTAACATGAGTCACAACCAGCTCATGCAGCTCATTGGACCAACTGGACTAGGTGGTCTTGgagGTCTTGGGGCCCTGGCTGGACCAGGCCTGGCCAGCCTGCTCAGTAGTGGAGGTCCTGCAGCCGGCAACTCCTCTTCAAGTCCATCTCAATCTCCTGCTGTcacccccacctctacctctgcTGCCACCCGGCTGGGCTCCTCCCAGGTGCCAACCACACCCATCACCCCGTCTGCCACCAGTGCAGCGTCACCCATGGCCTCACCCACCATCCCGGTTGCCCCCTCCATCGCAGCCGGGGcagccagccccacccagcccatcCAGCTGAGTGACCTGCAGAGTATCCTAGCAACCATGAACGTACCTGCGGCTGGGCAGGGAGTGGACCTGGCCAGTGTAGTGACCCCTGAGATCATGGCTCCTATTCTGGCCAATGCTGAGGTCCAGGAGAGGCTGCTGCCCTTTCTGCCGACAGGAGAGTCCCTGCCTCAGAGCACCGACGAGCTCCACAACACACTCACCTCTCCACAGTTTCAGCAGGCCATGAGTCTGTTCAGCAGTGCCCTGGCGTCGGGGCAGTTGGGGCCTTTAATGAACCAGTTTGGTCTGCCAACAGAAGCTGTGGACGCAGCTAACAAAGGAGACGTTGAGGCTTTTGCTAAAGCcatggagacagacagcaagTCTGACCATGAGGATGACGCCAAAGACAAAAAGGATGAAGATATGAGTTTGGATTAGGACCCTCTGTTAGTTCTGTTTAActtaatgtattttatttaaatgaTTTACTGGTTGTGGTGATGTTGTTCAGAGCACTGAAGCTGTAGACCATTTACCTCTGTACATGTACTCAGAATtgagatatttaaaaaaaagaaaaaagtcaTGTAAGACAGCCAAGGCTCTATTCAATCTCTCATGCTTCAGCGACACATCGAATAGAGCTAACCTCTCCTGTTCAATTATAACAAATTATTTATGTACATCCTCAGAGCTTGATTCAACACAACATGAAATGTTTTCCCTGATATGTTGCGAACCAGATTACTGCGGCTGGTTAGGACTGGTAGACCAGTGACAGTTGCATGTGCCAATCTGTGACCTGTAGCTTcctgacaaataaaataaaaactccaGTCACATGGtcagaaaaaaaca

Function

NR:

description
proteasomal ubiquitin receptor ADRM1-like isoform X2

GO: NA

KEGG:

id description
K06691 RPN13; 26S proteasome regulatory subunit N13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567200.2 True 1808 mRNA 0.51 10 46280328 46284105

Neighbor

gene id symbol gene type direction distance location
LOC110492134 LOC106567201 coding downstream 114767 46151597 ~ 46165561 (-)
peds1 tm189 coding downstream 145582 46129671 ~ 46134746 (-)
LOC110492133 LOC105022328 coding downstream 157447 46115201 ~ 46122881 (-)
slc52a3 slc52a3 coding downstream 169113 46103115 ~ 46111215 (-)
scrt2 scrt2 coding downstream 219446 46051699 ~ 46060882 (-)
LOC110492742 LOC106567211 coding upstream 3132 46287237 ~ 46293439 (-)
LOC110492744 LOC106567213 coding upstream 33739 46317844 ~ 46330626 (-)
LOC110492745 mare1 coding upstream 46749 46330854 ~ 46337487 (-)
LOC110492746 LOC106567215 coding upstream 56975 46341080 ~ 46371222 (-)
LOC110492748 ppdpf coding upstream 133357 46416560 ~ 46419996 (-)
G1380721 LOC100701228 non-coding downstream 2841 46277225 ~ 46277487 (-)
G1380720 NA non-coding downstream 3290 46276708 ~ 46277038 (-)
G1380719 LOC106567209 non-coding downstream 5394 46274086 ~ 46274934 (-)
G1380682 NA non-coding downstream 27189 46248735 ~ 46253139 (-)
G1380711 NA non-coding downstream 37155 46242883 ~ 46243173 (-)
G1380722 NA non-coding upstream 440 46284545 ~ 46284782 (-)
G1380741 NA non-coding upstream 54741 46338846 ~ 46339083 (-)
G1380786 NA non-coding upstream 136062 46420167 ~ 46420441 (-)
G1380768 NA non-coding upstream 155955 46440060 ~ 46517372 (-)
G1380817 NA non-coding upstream 203045 46487150 ~ 46548798 (-)
G1380431 NA other downstream 574875 45705110 ~ 45705453 (-)
LOC110492109 LOC106567177 other downstream 652630 45613938 ~ 45627786 (-)
slc48a1a LOC106567162 other downstream 959950 45315947 ~ 45320378 (-)
plxna2 LOC106567158 other downstream 1315846 44621739 ~ 44964691 (-)
G1378530 NA other downstream 1726781 44553014 ~ 44553547 (-)
LOC110492764 fkb1a other upstream 314592 46598697 ~ 46601691 (-)
LOC110492767 LOC106572444 other upstream 373362 46657459 ~ 46668762 (-)
LOC110491077 LOC106567232 other upstream 475182 46724969 ~ 46761466 (-)
G1381036 NA other upstream 594506 46878611 ~ 46879146 (-)

Expression


Co-expression Network