LOC110492742 (LOC106567211)


Basic Information

Item Value
gene id LOC110492742
gene name LOC106567211
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 46287237 ~ 46293439 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567202.2
GCGAGGAAGAGTTCTACGATGCTGAGACAGGTGGATGCATGCTTTAGAAATGTCATAAAAAGTACATTAGCTAATTGGTCTCGAATCAGATGAGGACTCTTGTGAGGTCAATTTTGAAGATGCCCAAGTGTATGACAGCAAGCATTCATCCAATGCCAGCACACCTCAGGCAAATGGAGTGTGGGAGCGCAGGAAAACCCTGCCTGCTCCAATGATCTCCAGATGTGACTACAGTGTATGGGGCATACTAAAGAAATGCATTGGCATGGAGCTGTCCAAGATAACGATGCCCATCGTGCTCAACGAGCCCCTGAGTTTCCTCCAGAGAATGTCAGAGTACATGGAACACACTCACCTCATCCACAAAGCCTGCACCCTGTCAGACTCCATAGACCGCATGCAGGTGGTAGCTGCTTTTGCAGTTTCTTCTGTGGCATCTCAATGGGACAGAACTGGAAAGCCATTTAATCCGTTGCTGGGGGAGACCTATGAACTCACACGTGAGGACGAGGGGTACAGGTTGATCTCAGAACAAGTGAGCCACCATCCACCTATCAGTGCCTTCCATGCCCAGTCTCTGAAGCAGGAGTTTGAGTTCCACGGctccatctaccccaaactcaagtTCTGGGGCAAGAGCGTGGAGGCGGAGCCTAAAGGCACCATGACACTGGAGCTGCTCAAACGTAAAGAGGCGTTTACATGGACAAACCCTCTCTGCTGTGTACATAACATCATCATGGGCAAGCTCTGGATTGAGCAATACGGAACTGTGGAAATAGTCAACCACCACACGGGGGACAGGTGTGTGTTGAACTTCAAGCCGTGCGGCATGTTTGGGAAAGAGCTGCACAAAGTGGAGGGCTACATTCAGGATAAGAGTAAGAGGAAGCGACGTGTGCTGTATGGGAAGTGGACAGAGTGTATGTACAGTGTGGCGCCTAAGGTGTATGAAGCCAACAAGAAGAAGGCCGAAAAGGGAGATGCTAAGAAAAATAAACCGGAGCAAAGTGCTGGAAAACAGGAGACTGAAGATATGCCTGGGGTTCAAGAGACCGTCTCTGTGATAACAGGAAGTGCCTTACTGTGGAGAATAACCCCACGACCTGCACATTCTgaagagATGTATAACTTCACCGGCTTCACCATAACACTGAATGAGCTGGAGCCTGGTATGGAGAGGCTGTTGGCACCCACGGACTGCCGTCTACGACCTGACATCAGAGCAATGGAGAATGGAGACCTGGACACAGCAAGTGTAGAGAAGGACAGGCTAGAGGAAAAACAGAGAGCTGCACGCAAGGAATGTTCCAAGGATGAAGAAGAGTGGTCAACCAGGTGGTTTCGGTTGGGAACAAACCCTCACACAGGAGCCCAGGACTGGCTGTACACAGGAGGATATTTTGATAGAAATTACACAGACTGTCCCAACCTTTACTGATGGGGCAGGAGGAACAAGGAAGGGTTTCCATCACCACCCGTAGTGGACTGATGTTTGCCCGATGATCCCGTTCGTTCTCAGCCTTAGAATGTCAGGCAGCTGAGCCCACAATTTTATTACAGTTTTCCCAACCTAGACAAACCTCTCCCACAATACAACAATGGAATCAAGAAGTTAATATGTATGTGACAAACATGATTTCATTCCCATTGTGCAAGTGACAAAGGGAAAATTTGAGCATTGTGAAAGACTTAAAATCGAGGCTAAGATAAGAGAATATTCAGTCTTCCTAAATGGCCTGGGCCTCCTGGTTAATTAACTGTAAGAATCCCACTCATCTCTGATGGTTTTATTTATGGTACCCAAGGCTTTCTAAAACCACATCCGATAATGTGACATCTGTGGTGGTGGCCATTGTTCAGCAGTGGAATAATGTACTATAGCTCTGATCGACATACATTATCATGTTGAGCTAGATTGGAAGGAGGAGTTTGTACAATACTCACTGTACAAACACAGTTACATTCAAAGATCAGGCTTCATTCACACAACTTTTATTCATAAGTTGTGTGAGTATTAAGACTTttatttgagatgtttctaaaacatGATGTGCACATTGTTCACGTGCTGGTTCCTTCTTAAATATTAAGGATTTGAATGTGTTGTTTTGTGACTAGAAGTCTAGTACTGAAAGCTGCTAATGACCGTGTTTTACTAACTTAGTAAACTAAGTGTTATTTGTAAATGATTGTTATGGCATTGAAAACTGTAACAAATGCAGATGataatttggtgtgtgtgtgcgtgttgtgcaTGGTCACCTAAATAATTCTTTACACAAACGAAAACCATATAACACTTGAAAGATTGTTTTTCCAAATCGCATCCCCCTTTTTCATCACGTAAAGCTCTGGTATTGATCACAGCGACATGAAATCAAATGGAGCACCTTTTAAATGTCAGCCATCGTAAATCTATGCAAACAAACATGACCATTTTTCTCTGTCTACTGCACAACTAGGAGACATAGAATGTGAAAATAAACAAACATCACTTATGGGCCTCCCTCATTGGTATCTGAAGATTCTGTGCTGAACATACAGTACTTCTAGACTTGGGAGGGTGTCATACTCCAATGGAATAGCACTAGTTATCTCTTAACACTACCATCTGAGTATGCTTCCAGTCCTGTGCACAGAATGATGGTGTCTGACCTGCTTCCCCCTCCCTCACATGTTACCcttattaaaaaatgttttatgtagAA
>XM_021567201.2
CAGTAGCATCGTCCTTACCGCCCACTTCCGCCCCCTAGAGTTCTTCAAGACTAGTACACTCTTCGTTGTTTATGTTTTGTACAGCAACACATTTggactttgaaaggctgGTGTCTGTGAGGCTTGGATAGCCTGAACCACAAGTACCCGGCCAAAAAATAAAGATATGTTTTGAGTGACATTGCACAATACTGCTCAGAATGAACAGCGAGGAAGAGTTCTACGATGCTGAGACAGGTCTCGAATCAGATGAGGACTCTTGTGAGGTCAATTTTGAAGATGCCCAAGTGTATGACAGCAAGCATTCATCCAATGCCAGCACACCTCAGGCAAATGGAGTGTGGGAGCGCAGGAAAACCCTGCCTGCTCCAATGATCTCCAGATGTGACTACAGTGTATGGGGCATACTAAAGAAATGCATTGGCATGGAGCTGTCCAAGATAACGATGCCCATCGTGCTCAACGAGCCCCTGAGTTTCCTCCAGAGAATGTCAGAGTACATGGAACACACTCACCTCATCCACAAAGCCTGCACCCTGTCAGACTCCATAGACCGCATGCAGGTGGTAGCTGCTTTTGCAGTTTCTTCTGTGGCATCTCAATGGGACAGAACTGGAAAGCCATTTAATCCGTTGCTGGGGGAGACCTATGAACTCACACGTGAGGACGAGGGGTACAGGTTGATCTCAGAACAAGTGAGCCACCATCCACCTATCAGTGCCTTCCATGCCCAGTCTCTGAAGCAGGAGTTTGAGTTCCACGGctccatctaccccaaactcaagtTCTGGGGCAAGAGCGTGGAGGCGGAGCCTAAAGGCACCATGACACTGGAGCTGCTCAAACGTAAAGAGGCGTTTACATGGACAAACCCTCTCTGCTGTGTACATAACATCATCATGGGCAAGCTCTGGATTGAGCAATACGGAACTGTGGAAATAGTCAACCACCACACGGGGGACAGGTGTGTGTTGAACTTCAAGCCGTGCGGCATGTTTGGGAAAGAGCTGCACAAAGTGGAGGGCTACATTCAGGATAAGAGTAAGAGGAAGCGACGTGTGCTGTATGGGAAGTGGACAGAGTGTATGTACAGTGTGGCGCCTAAGGTGTATGAAGCCAACAAGAAGAAGGCCGAAAAGGGAGATGCTAAGAAAAATAAACCGGAGCAAAGTGCTGGAAAACAGGAGACTGAAGATATGCCTGGGGTTCAAGAGACCGTCTCTGTGATAACAGGAAGTGCCTTACTGTGGAGAATAACCCCACGACCTGCACATTCTgaagagATGTATAACTTCACCGGCTTCACCATAACACTGAATGAGCTGGAGCCTGGTATGGAGAGGCTGTTGGCACCCACGGACTGCCGTCTACGACCTGACATCAGAGCAATGGAGAATGGAGACCTGGACACAGCAAGTGTAGAGAAGGACAGGCTAGAGGAAAAACAGAGAGCTGCACGCAAGGAATGTTCCAAGGATGAAGAAGAGTGGTCAACCAGGTGGTTTCGGTTGGGAACAAACCCTCACACAGGAGCCCAGGACTGGCTGTACACAGGAGGATATTTTGATAGAAATTACACAGACTGTCCCAACCTTTACTGATGGGGCAGGAGGAACAAGGAAGGGTTTCCATCACCACCCGTAGTGGACTGATGTTTGCCCGATGATCCCGTTCGTTCTCAGCCTTAGAATGTCAGGCAGCTGAGCCCACAATTTTATTACAGTTTTCCCAACCTAGACAAACCTCTCCCACAATACAACAATGGAATCAAGAAGTTAATATGTATGTGACAAACATGATTTCATTCCCATTGTGCAAGTGACAAAGGGAAAATTTGAGCATTGTGAAAGACTTAAAATCGAGGCTAAGATAAGAGAATATTCAGTCTTCCTAAATGGCCTGGGCCTCCTGGTTAATTAACTGTAAGAATCCCACTCATCTCTGATGGTTTTATTTATGGTACCCAAGGCTTTCTAAAACCACATCCGATAATGTGACATCTGTGGTGGTGGCCATTGTTCAGCAGTGGAATAATGTACTATAGCTCTGATCGACATACATTATCATGTTGAGCTAGATTGGAAGGAGGAGTTTGTACAATACTCACTGTACAAACACAGTTACATTCAAAGATCAGGCTTCATTCACACAACTTTTATTCATAAGTTGTGTGAGTATTAAGACTTttatttgagatgtttctaaaacatGATGTGCACATTGTTCACGTGCTGGTTCCTTCTTAAATATTAAGGATTTGAATGTGTTGTTTTGTGACTAGAAGTCTAGTACTGAAAGCTGCTAATGACCGTGTTTTACTAACTTAGTAAACTAAGTGTTATTTGTAAATGATTGTTATGGCATTGAAAACTGTAACAAATGCAGATGataatttggtgtgtgtgtgcgtgttgtgcaTGGTCACCTAAATAATTCTTTACACAAACGAAAACCATATAACACTTGAAAGATTGTTTTTCCAAATCGCATCCCCCTTTTTCATCACGTAAAGCTCTGGTATTGATCACAGCGACATGAAATCAAATGGAGCACCTTTTAAATGTCAGCCATCGTAAATCTATGCAAACAAACATGACCATTTTTCTCTGTCTACTGCACAACTAGGAGACATAGAATGTGAAAATAAACAAACATCACTTATGGGCCTCCCTCATTGGTATCTGAAGATTCTGTGCTGAACATACAGTACTTCTAGACTTGGGAGGGTGTCATACTCCAATGGAATAGCACTAGTTATCTCTTAACACTACCATCTGAGTATGCTTCCAGTCCTGTGCACAGAATGATGGTGTCTGACCTGCTTCCCCCTCCCTCACATGTTACCcttattaaaaaatgttttatgtagAA

Function

NR:

description
oxysterol-binding protein-related protein 2-like isoform X1

GO: NA

KEGG:

id description
K20174 OSBPL1_2, ORP1_2; oxysterol-binding protein-related protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567202.2 False 2711 mRNA 0.45 13 46287237 46292840
XM_021567201.2 True 2871 mRNA 0.45 14 46287237 46293439

Neighbor

gene id symbol gene type direction distance location
LOC110492740 LOC106567210 coding downstream 3132 46280328 ~ 46284105 (-)
LOC110492134 LOC106567201 coding downstream 121676 46151597 ~ 46165561 (-)
peds1 tm189 coding downstream 152491 46129671 ~ 46134746 (-)
LOC110492133 LOC105022328 coding downstream 164356 46115201 ~ 46122881 (-)
slc52a3 slc52a3 coding downstream 176022 46103115 ~ 46111215 (-)
LOC110492744 LOC106567213 coding upstream 24405 46317844 ~ 46330626 (-)
LOC110492745 mare1 coding upstream 37415 46330854 ~ 46337487 (-)
LOC110492746 LOC106567215 coding upstream 47641 46341080 ~ 46371222 (-)
LOC110492748 ppdpf coding upstream 124023 46416560 ~ 46419996 (-)
LOC110492750 LOC106567218 coding upstream 129713 46423152 ~ 46439814 (-)
G1380722 NA non-coding downstream 2455 46284545 ~ 46284782 (-)
G1380721 LOC100701228 non-coding downstream 9750 46277225 ~ 46277487 (-)
G1380720 NA non-coding downstream 10199 46276708 ~ 46277038 (-)
G1380719 LOC106567209 non-coding downstream 12303 46274086 ~ 46274934 (-)
G1380682 NA non-coding downstream 34098 46248735 ~ 46253139 (-)
G1380741 NA non-coding upstream 45407 46338846 ~ 46339083 (-)
G1380786 NA non-coding upstream 126728 46420167 ~ 46420441 (-)
G1380768 NA non-coding upstream 146621 46440060 ~ 46517372 (-)
G1380817 NA non-coding upstream 193711 46487150 ~ 46548798 (-)
LOC110492758 LOC106567225 non-coding upstream 230959 46524093 ~ 46531221 (-)
G1380431 NA other downstream 581784 45705110 ~ 45705453 (-)
LOC110492109 LOC106567177 other downstream 659539 45613938 ~ 45627786 (-)
slc48a1a LOC106567162 other downstream 966859 45315947 ~ 45320378 (-)
plxna2 LOC106567158 other downstream 1322755 44621739 ~ 44964691 (-)
G1378530 NA other downstream 1733690 44553014 ~ 44553547 (-)
LOC110492764 fkb1a other upstream 305258 46598697 ~ 46601691 (-)
LOC110492767 LOC106572444 other upstream 364028 46657459 ~ 46668762 (-)
LOC110491077 LOC106567232 other upstream 465848 46724969 ~ 46761466 (-)
G1381036 NA other upstream 585172 46878611 ~ 46879146 (-)

Expression


Co-expression Network