LOC110492744 (LOC106567213)


Basic Information

Item Value
gene id LOC110492744
gene name LOC106567213
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 46317844 ~ 46330626 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945814.1
GCAATATAAGGCTTCTACAGGCATCACTTTTCTTAAAAAATTAAGGTTTGATTGGAAAAACTAGATGTGTTTATAGGTTGAAGAAATAGCTTGTTTTAACTTCTGTGATGTTATTAACTGAAAATGAATTAGAATGTGTATATTTATGTGCTCGTTAAAATGTCCTGACATACATTTGCATTGCTATTGGCAGTTGGTTCTAACTGCAGTTACCCAAGGCCCGGTGGGCCTCATTCACCTGCAGTAAACCCAAATCAGAACAGTGACATAAATGTAAACCTGCCCAGAGTAAAGGGccataaataaaaacaaatgtctAGAAACCCACTGCGCCATAGACGTGGGTGACAGGGTGTACTTGTCATACTGGGTGGTGTCAATTCTGCCACCGGTCGGCAACATGGCAGCCCTTTGTGTGGGCTGGGTGCTGTTCCTGATCGGGCTCCCTGCCTGCACCCTGGGGGTTCGCAATAGGGAGCACCTGCCTTGTGGGTACCACTGTGAGTGTCTTGATTCTGTATGTCCCGTTGAGCCAGCTCCATCTGCGTCTTCATGTTGCCCTCTCCCTACGCTGTTGGCACCAGGGGCTTCCTGATGACTGCTCTCCTCATTCTGAGCTGGGCTGTGTCATTTTCTCTGATCAGAATATACAGGTCCTCGTCTAGATCTTCCATGTGGggttttcctctgtctctcactgacccCCATCCTTGCATGTTGATCTGGCATCCGGTTTCTGCTTCCAGTGACTTGGCCCCACTAATCTGCCTATATAAGTTATAATCGGGCTAGTCTTTTACAGGCACAAAGCTTCTCCTGCAGGTGAATGAGGCCCACCGGGCCTTGGGTAACTGCAGAGGTTGTTTGTCTACAACATGTCGTTGGACATGTTATCCTGCATTCTATTGATCTCTTCATCCATAAGCTTCTCTGTGTCTGTCAAGATGCAAAACAGATTTGGATAACTGGTCATAATCTTTTCAGGTAACGATTGTGTCAAATAGGCAGGACTCTGTCTCCCCTTCTGTCTCCCTAGTGTCATCTTTCTGTCATCAAGAGTGCAAGGTCTTTTTTTATCAACAGAAAAAAAGCTTGGAAATCTGGTCAGAATCTGGTTAAGTTTGATCTCCATAGTTATCAATGATTTATGTTAGGACCATCTCTCTCACATTGTGACATCACCAAAAGAGCATTGTTCTTCTGTGAGCATTTGTGCCTGTGTTAAAGGTGGAAAGCCATGACCAGTGTGAGCTTGTGGACTGTCACAGAGGAACTGTGAAGATGGCCAGCCTTACAAGTTCCACCTCCGATGACAAGCAGAAACACACCACAGCTCCGGGTATTTCAGGGGAGGCGGAGCGTTCAGGGAAGAGCAGTGACACCGCGGAGGAGGACATGCCAGCTGAGGGGGGAGTGGAGAATCAGATCAACGAACAGCACCTTCGCCGCATTGAACGCATGTTCAGAGAGGCTGACACGGATGGAGGGGGGGGGTTGGATATGGCTCAGTTCCGAGATGCGATGAAGAAGATCATGGGCGATGTGGATGACGAGGATGTGGACATTATCTTTATGAAGGTGGACACCAACTGTGACGGCAGAATGGACTGGGTTGAATATCTGAACTACATGCTTTTAGAGTACAGAGAGAAAGACTCTTTGCAGCAGCAAAACAGGCCAATCTACTTTCCCAAACCACTCAAGATTGTGCCTGTTGCACACTGTGAGACCATTGTCCGGCTCCAGTTCTACCCATTCCAGCCTCCAGCCGGGGAGAAAAAGACAGACTCTGGGGAGCATGGCAGGGCCTCGGGGGGTTCTAAGGGCCGCGCCCACAGTGGACGCTACCTGTCAATCAGCCGTGATGGCGTTCTCAACTACTGGAGCGAGAGGTTCAAGCTGCTGCGCACTGTCAATATAAGTCAGATGCAGCACACAGTGGCCCAGCCCGTCTGGGTGACAGACATGGCCTGCCTGAGCAACATCAACCagctctccatctcctccacagGGCGAGACGTAGAATTCTATGACATCAGTGCCAGTAAGTGTGACATAGTGTTCTCCCTGTCGGAGCTGGAGGCCAACGTGGAGGTGATGGACTACTGGACAGATGGTAAGAGAGGAGTGTACTCCATTGGGGATGCCAGTGGCACCATATACATCTTTGTCTCCTCTGATGTGGTCCATAATGGCCTGTTCAACAGTGCTGCCTTCAAGACAGGAACAAACTATCGCATCCCCGTGTCAGCCCTGCTCAAAAACACCTCCAGCTCATTTCTCTGCTTTCGAGTCCCCAGCCACAATGACTGGATCCACCAGATCCGCTACATCCCAGAGTTGAATGCCATCGCCACCTGCTGTGCGGCAGACCAAACTTCCATGATCCTGACCACGCTGCCCCACTCACGCAAGTGTAAAATTCAAACTGCAAACTTTCACATGCAGAAGGGAATTCTGTGTTTTGACTACTCACCTGAGCTCAACGTTCTGGTGACTGGATGCTTCGATCGGGTTGTGAGGGTCTGGAACCCCTATGTGACCAATCAGGCCACATCACAGATGAAAGGTCACTGCACCATCATCACTCACATCGCTGTCAACGGCAGAGACAACAAGATCATCAGTGTCTCCAAAGACAAGAATGTGCGGGTGTGGGACCTGCAGGACAGTGTCTGCCTCCAGAACATCCAATCCAGGAACGTCAACATGGGCTGCTTCCCCATCACCAGCACCTACTATAACCACACCAGTAACACCATGGTGATGGCTACGTACCTAATTGGAGTTCTTCGAGGGTCTATGGAGGATGCAAACTGCTCTGTACCCACAGCTACAACATCACATGAACAGCCACTCTGTGCTGCTCTCTACAACTCCAACTTCAAACAGGTGGTAAGTGGGTGCCATGCGGGCGTGGTCAGTGTGTGGGACATCCTGACGGGGGAGAAGGTAATGCAGTTCCAAACGACCCCTGAGCGACCAGTTGAAGTCACTGCCATGACATTCGACGGGCCCAAACGCCGCCTCATCACCGGGTCTAAAGACGGCACCCTGCGTCTCTGGAACTTCAACAACGGGGCTCTCCTTTCTGAACTGCCCCTGGTGGACAGCAATGAGGTTACAGGGATTCTGTACATCAACGAGAGGATTTATGTTTCAGGCTGGAGCAAACGGGTCATGTGGTATCTGGACAATAAGGAGGAGGATAAGATGGAGCACCGCGTGTGGAACCAGTACCACTCAGACGACATCTATTCCATGCACGCCCACGGCAGCAAGATGCTGGTGACTGCCTCCTACAGCGGTGATGTCATTGTCTGGAACATAGATTCAGGGCAAGCCTTCTGCCGTTTCAACGCTAGCGAGAGCCCACTGCCCCTCTTACCCATACGGGTGATAGAGAAACCAGGCCAGGTGGTGACTGTTATGAGTCCAGACGGTTTGGGGAAAGAGGATGAGGACGATGTGTGGCTCCGCTCTATGGTGGAATTTCTTGAGACCGTGAGCCAGACTCTCAACCCTCAGGCTCGTCGTCCCAGCTGTGCCAACCCTGCCCACACCAACGTCATACagCAAATCAATCAAGCCCGGCGTTGCAGTATTCCAGAGCCCCCTCCTGATCCTGTGATTCAGGGGCCTCGCGCCAACATGCGGCATGGCCGGAGGGGTAGCATCTCGGCTCCAGTCTCTGCTTTACTGCCCCAGCCGGTCACAGTCTCCATGGGTAGGCGGACGACACTGCTGCCCAGACGCAAGAGCAAAACCATCAACCTAGACGAGCTGGAGAAGCCTCGGTTTGCAGTGGAGAAAGTGTTGTTTCTGGCCACCCGTGAGCGTAGCCCTGACACGGCCATCCTCCTGACCAGCTCAGCAGACGGCTACATCTACGCCTGGTCTATCGGCCGTAACGGAGGGCTGCTGGGGAAATTCCGTGCCGTGCATAACAAGGGGCCAGTCATCTGTGCCATGTTCACTGACAGACAGGACCAGATACTGCTCACTGGAGACAGCAACGGATACATCACGCTGTGGGACATTGAGAAGTACTGTTACCGTATGAGGGGTGGGGGGGCTGAGGAGGAATCATCCAATGAGGACTCTCTGAGGTTGCCTCAACTCATACCTCCCTACTGCAAAGTGGAGGGACCACGGAGGCTGGTGGTGGAGCAGGACAAAGAGATTTTGCAGGGATGGAGTGTGTCCCTGATCCCCCCTAGGCCCCTGAGTTCCTGGCGCTGCCACCTGAAAGGGATCGTTCATCTTGAGTATGTGGAGCGTTTCCGCCTCATCGTCACAGCCAGCCTGGACTGTAACGTACGTCTGTGGACCACCGCTGGCAGATACATCGGTACATTTGGGCAGGGCCTGTGGCGGGTGGGCGATCCCAAGGCCCTCCACACAGAGCTCCCAGTGGACCTGAAGAGGATGGGGTCATGTCAGACACTTAAAGTCCTTAATGAGGGGAAGTACCCGCACTGGAGCTGTGCCAAACGCATCCTGGAGGGCCTGACTGCACAGAAGAGTCAGCAGTCGACAAAGTTTGGTGGGGTCACAACGCAGCTGAGGGAACTGGTTCCTACCGACCCAAGGATCGTCAAGTACACCGACGAGCAGATTGAGAACACATGGAGACTGTGGCAGGAGAAGGGAAGGCAGACCAGCAGCATTTTAGGACGAGCATACAAACAGAAAGTGAGACATCACCTTCCGTCCTGTACCCCTGACCTCCAGACAACCTTCAGCAGTCAAGAGCAGTTGAGGGTGTATAAGGCCTTGCCCTACAGCGTTCTGCGGCCCGTCACCCTGCCCCCTGTCCCAGAGCTTCTGAAGGACCATCAACACAGGTTAAATGAGGGCACAGACACTGCCGCCAAGCAGAAGAGGAGCACTAAGCGCCGgccccactcacacacacgctaCCTGGCTGCTCCTCCGTGACCAGCAACTCCCAGGTGCTAATATGACCCTCGCTGATTACATTCAGAAATAAAAATGAGTCTGGCAAGGCA

Function

NR:

description
WD repeat-containing protein on Y chromosome-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945814.1 True 5012 mRNA 0.52 28 46317844 46330626

Neighbor

gene id symbol gene type direction distance location
LOC110492742 LOC106567211 coding downstream 24405 46287237 ~ 46293439 (-)
LOC110492740 LOC106567210 coding downstream 33739 46280328 ~ 46284105 (-)
LOC110492134 LOC106567201 coding downstream 152283 46151597 ~ 46165561 (-)
peds1 tm189 coding downstream 183098 46129671 ~ 46134746 (-)
LOC110492133 LOC105022328 coding downstream 194963 46115201 ~ 46122881 (-)
LOC110492745 mare1 coding upstream 228 46330854 ~ 46337487 (-)
LOC110492746 LOC106567215 coding upstream 10454 46341080 ~ 46371222 (-)
LOC110492748 ppdpf coding upstream 86836 46416560 ~ 46419996 (-)
LOC110492750 LOC106567218 coding upstream 92526 46423152 ~ 46439814 (-)
LOC110492749 LOC106567344 coding upstream 112297 46442923 ~ 46448034 (-)
G1380722 NA non-coding downstream 33062 46284545 ~ 46284782 (-)
G1380721 LOC100701228 non-coding downstream 40357 46277225 ~ 46277487 (-)
G1380720 NA non-coding downstream 40806 46276708 ~ 46277038 (-)
G1380719 LOC106567209 non-coding downstream 42910 46274086 ~ 46274934 (-)
G1380682 NA non-coding downstream 64705 46248735 ~ 46253139 (-)
G1380741 NA non-coding upstream 8220 46338846 ~ 46339083 (-)
G1380786 NA non-coding upstream 89541 46420167 ~ 46420441 (-)
G1380768 NA non-coding upstream 109434 46440060 ~ 46517372 (-)
G1380817 NA non-coding upstream 156524 46487150 ~ 46548798 (-)
LOC110492758 LOC106567225 non-coding upstream 193772 46524093 ~ 46531221 (-)
G1380431 NA other downstream 612391 45705110 ~ 45705453 (-)
LOC110492109 LOC106567177 other downstream 690146 45613938 ~ 45627786 (-)
slc48a1a LOC106567162 other downstream 997466 45315947 ~ 45320378 (-)
plxna2 LOC106567158 other downstream 1353362 44621739 ~ 44964691 (-)
G1378530 NA other downstream 1764297 44553014 ~ 44553547 (-)
LOC110492764 fkb1a other upstream 268071 46598697 ~ 46601691 (-)
LOC110492767 LOC106572444 other upstream 326841 46657459 ~ 46668762 (-)
LOC110491077 LOC106567232 other upstream 428661 46724969 ~ 46761466 (-)
G1381036 NA other upstream 547985 46878611 ~ 46879146 (-)

Expression


Co-expression Network