LOC110492748 (ppdpf)


Basic Information

Item Value
gene id LOC110492748
gene name ppdpf
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 46416560 ~ 46419996 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567213.2
CTTCCTTGGAAACGTAGGCCTAAACGTGCCCTAACCCCACCCATGAGCAGCTCGTCCAGGATGCGTCACAGCGCCCACTGTATAAAGTTACCTGCTTGTCCCTAGTCATCATTCTACACTGAGCACACCAGAAATAATTTGAAGTTTTCTATTCGAGAACATACCACAAATGGGCAAGAGTAGTCGTTTAGCTTAATTCACCGAGTATTGCCAAAAGACCCCGCCTTTGGTGTTTTTCAACATCATTCAACGCCAAATAAAAAGGTTTTCCATCTTTGAGCGGAGTTAAAGAGAATGGCATCAATTCCGTCCACTGGCTCTCTCATCGCCACCCATGATTACTATAGAAGGCGCATAGGCTCCACTTCTAGCAACAGCTCCTGTGGCAGTTCTGAGTACGCTGGTGAAGTCATTCCACACCCCCCAGGTCTGCAGAGACAGGACTCTGGTCACTGGTGGTCTTCTTTCTTCTTCCCAAACAAACAGAACCAGCCTGGCAGTATGATTGGATCTGAACAGAAGAGTGGAACGTACACAGTGACCAATGGGCAGGTGGCGTGTATCGCCAGGGAGATGGTGTTGAAGAAGCAACTCAGTAGGCAACTCAGTGAAAGCAGTAACTCTGGGAAGGTGGAACAAGGGAGCCCACCACCCTCCTAATTCCATCTCTTCTCCAACACCCCACACCTTGAGTTTAGTTGGAGATTGAGGCAGCAGATTTTACAACTTTTTAGTGATTGAGGCTGCTTTTCCTCCCtctgtgtttatatatttttttataaaagacAAAAGGATTTCTCTATCATGCTTTTTGCTGTTGAATAAATCAAAATTCTTGCAATGAA
>TU1577246
CTGAGCACACCAGAAATAATTTGAAGTTTTCTATTCGAGAACATACCACAAATGGGCAAGAGTAGTCGTTTAGCTTAATTCACCGAGTATTGCCAAAAGACCCCGCCTTTGGTGTTTTTCAACATCATTCAACGCCAAATAAAAAGGTTTTCCATCTTTGAGCGGAGTTAAAGAGAATGGCATCAATTCCGTCCACTGGCTCTCTCATCGCCACCCATGATTACTATAGAAGGCGCATAGGCTCCACTTCTAGCAACAGCTCCTGTGGCAGTTCTGAGTACGCTGGTGAAGTCATTCCACACCCCCCAGGTCTGCAGAGACAGGACTCTGGTCACTGGTGGTCTTCTTTCTTCTTCCCAAACAAACAGAACCAGCCTGGCAGTATGATTGGATCTGAACAGAAGAGTGGAACGTACACAGTGACCAATGGGCAGGTGGCGTGTATCGCCAGGGAGATGGTGTTGAAGAAGCAACTCAGTAGGCAACTCAGTGAAAGCAGTAACTCTGGGAAGGTGGAACAAGGGAGCCCACCACCCTCCTAATTCCATCTCTTCTCCAACACCCCACACCTTGAGTTTAGTTGGAGATTGAGGCAGCAGATTTTACAACTTTTTAGTGATTGAGGCTGCTTTTCCTCCCtctgtgtttatatatttttttataaaagacAAAAGGATTTCTCTATCATGCTTTTTGCTGTTGAATAAATCAAAATTCTTGCAATGAATACTTTGTCTTAATTGTATTCCCTATTCAAGTGACTAAGTCCCTAAATATTTGTTTGTCTATAACTATAGACActgtaccagtcaagtttggacacctactcagtacaagagatgtcactacagtccctggtttgaatccaggctgtatcacatctggctgtgattgggagtcccatagggcagtgcacaattggcccaggtttgccctgggtaggctgtcattgtaaataagaatttgttcttaactaacttgcccaGTTAAAGGTTCAATTGTTTACAAAATGCAGGgttttgaaataacacataacacacactaaaccaagaaagtgttaaacaaattcaatGATTTGAAATTTttcaaagtggccaccctttgccttgacagcttttcacgctcttggcattcttaaccagcttcatgtctttaagttgtggaatttctttcctcaatgcatttgagccaatcagttgtgttgacaaggtaggggtggtatacagagagCCCTATTTAGGGGAAAGACGCAACAGCTCAAACAGCACCAGTTCATTCTCCGACCTTgtcggaaaatttcaagaactttgaaagttaaGTGGAGTCGCAAAAACTGTTCAGATGAgcctgcgtgaatcaggccttcatggtcaaattgctgcaaagaaaccactaaaggacaccaagaagagactcgcttgggccaagaaacacagatttttggttccaactgccatgtctttgtgagacacgagtaggtgaatggatgatcacGTGTGCTTTGCTAGTGAACTTGTcggtgatttattttgaattactATGTCATTCCATTGttttatttcatggttttgatttcactattctacaatgtagaaata
>TU1577247
CTGAGCACACCAGAAATAATTTGAAGTTTTCTATTCGAGAACATACCACAAATGGGCAAGAGTAGTCGTTTAGCTTAATTCACCGAGTATTGCCAAAAGACCCCGCCTTTGGTGTTTTTCAACATCATTCAACGCCAAATAAAAAGGTTTTCCATCTTTGAGCGGAGTTAAAGAGAATGGCATCAATTCCGTCCACTGGCTCTCTCATCGCCACCCATGATTACTATAGAAGGCGCATAGGCTCCACTTCTAGCAACAGCTCCTGTGGCAGTTCTGAGTACGCTGGTGAAGTCATTCCACACCCCCCAGGTCTGCAGAGACAGGACTCTGGTCACTGGTGGTCTTCTTTCTTCTTCCCAAACAAACAGAACCAGCCTGGCAGTATGATTGGATCTGAACAGAAGAGTGGAACGTACACAGTGACCAATGGGCAGGTGGCGTGTATCGCCAGGGAGATGGTGTTGAAGAAGCAACTCAGTAGGCAACTCAGTGAAAGCAGTAACTCTGGGAAGGTGGAACAAGGGAGCCCACCACCCTCCTAATTCCATCTCTTCTCCAACACCCCACACCTTGAGTTTAGTTGGAGATTGAGGCAGCAGATTTTACAACTTTTTAGTGATTGAGGCTGCTTTTCCTCCCtctgtgtttatatatttttttataaaagacAAAAGGATTTCTCTATCATGCTTTTTGCTGTTGAATAAATCAAAATTCTTGCAATGAATACTTTGTCTTAATTGTATTCCCTATTCAAGTGACTAAGTCCCTAAATATTTGTTTGTCTATAACTATAGACActgtaccagtcaagtttggacacctactcagtacaagagatgtcactacagtccctggtttgaatccaggctgtatcacatctggctgtgattgggagtcccatagggcagtgcacaattggcccaggtttgccctgggtaggctgtcattgtaaataagaatttgttcttaactaacttgcccaGTTAAAGGTTCAATTGTTTACAAAATGCAGGgttttgaaataacacataacacacactaaaccaagaaagtgttaaacaaattcaatGATTTGAAATTTttcaaagtggccaccctttgccttgacagcttttcacgctcttggcattcttaaccagcttcatgtctttaagttgtggaatttctttcctcaatgcatttgagccaatcagttgtgttgacaaggtaggggtggtatacagagagCCCTATTTAGGGGAAAGACGCAACAGCTCAAACAGCACCAGTTCATTCTCCGACCTTgtcggaaaatttcaagaactttgaaagttaaGTGGAGTCGCAAAAACTGTTCAGATGAgcctgcgtgaatcaggccttcatggtcaaattgctgcaaagaaaccactaaaggacaccaagaagagactcgcttgggccaagaaacacgatcaatggacattagactggaaATCTGtccagatttttggttccaactgccatgtctttgtgagacacgagtaggtgaatggatgatcacGTGTGCTTTGCTAGTGAACTTGTcggtgatttattttgaattactATGTCATTCCATTGttttatttcatggttttgatttcactattctacaatgtagaaata

Function

symbol description
ppdpf Predicted to be involved in cell differentiation.

NR:

description
pancreatic progenitor cell differentiation and proliferation factor

GO:

id name namespace
GO:0001708 cell fate specification biological_process
GO:0031017 exocrine pancreas development biological_process
GO:0008283 cell population proliferation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567213.2 False 845 mRNA 0.46 4 46417462 46419996
TU1577246 False 1598 TUCP 0.42 5 46416560 46419878
TU1577247 True 1629 TUCP 0.42 4 46416560 46419878

Neighbor

gene id symbol gene type direction distance location
LOC110492746 LOC106567215 coding downstream 46240 46341080 ~ 46371222 (-)
LOC110492745 mare1 coding downstream 79975 46330854 ~ 46337487 (-)
LOC110492744 LOC106567213 coding downstream 86836 46317844 ~ 46330626 (-)
LOC110492742 LOC106567211 coding downstream 124023 46287237 ~ 46293439 (-)
LOC110492740 LOC106567210 coding downstream 133357 46280328 ~ 46284105 (-)
LOC110492750 LOC106567218 coding upstream 3156 46423152 ~ 46439814 (-)
LOC110492749 LOC106567344 coding upstream 22927 46442923 ~ 46448034 (-)
LOC110492754 LOC106567220 coding upstream 58320 46478316 ~ 46486506 (-)
LOC110492757 LOC106567223 coding upstream 70079 46490075 ~ 46494132 (-)
LOC110491073 LOC106572454 coding upstream 93744 46513740 ~ 46518909 (-)
G1380741 NA non-coding downstream 78379 46338846 ~ 46339083 (-)
G1380722 NA non-coding downstream 132680 46284545 ~ 46284782 (-)
G1380721 LOC100701228 non-coding downstream 139975 46277225 ~ 46277487 (-)
G1380720 NA non-coding downstream 140424 46276708 ~ 46277038 (-)
G1380719 LOC106567209 non-coding downstream 142528 46274086 ~ 46274934 (-)
G1380786 NA non-coding upstream 171 46420167 ~ 46420441 (-)
G1380768 NA non-coding upstream 20064 46440060 ~ 46517372 (-)
G1380817 NA non-coding upstream 67154 46487150 ~ 46548798 (-)
LOC110492758 LOC106567225 non-coding upstream 104402 46524093 ~ 46531221 (-)
G1380895 NA non-coding upstream 182119 46602115 ~ 46603005 (-)
G1380431 NA other downstream 712009 45705110 ~ 45705453 (-)
LOC110492109 LOC106567177 other downstream 789764 45613938 ~ 45627786 (-)
slc48a1a LOC106567162 other downstream 1097084 45315947 ~ 45320378 (-)
plxna2 LOC106567158 other downstream 1452980 44621739 ~ 44964691 (-)
G1378530 NA other downstream 1863915 44553014 ~ 44553547 (-)
LOC110492764 fkb1a other upstream 178701 46598697 ~ 46601691 (-)
LOC110492767 LOC106572444 other upstream 237471 46657459 ~ 46668762 (-)
LOC110491077 LOC106567232 other upstream 339291 46724969 ~ 46761466 (-)
G1381036 NA other upstream 458615 46878611 ~ 46879146 (-)
LOC110492137 LOC106567248 other upstream 667173 47081938 ~ 47089563 (-)

Expression


Co-expression Network