LOC110492750 (LOC106567218)


Basic Information

Item Value
gene id LOC110492750
gene name LOC106567218
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 46423152 ~ 46439814 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036386.1
CCAGCACAGCCTGcacaggtggctgtttgtgtttCCCGCAGCAGCAGCAAAGTTCGTTCTGAATGAATTAGGATAGCCTATACTTGATAAAATAACATCGATGAACAATATGGACAATATGTATACAAATACATCGAATTTGTTTACTCGACAGGGGTACGCCACCATCATCTCACACACTCACGTGCGGGATTaactcacattcttaaaatacttAGGTGTTGAATAAACAACGCAACATAACGTTAATATTCCAAATAAGACTACATTATGTTCTtgatttcctgtatatagctttgGCATGTAAACCATAGCGTGATACTGAATGTGAGTATAGAGAAGCATTTGAGACATCCATTATTGAACAGTAGGGATTGGACACCATTTAGCAAAAGCTAACGATAGCACGAACACGGAAAAGAAGTGCTGGGTGAAACGGAGTTGTTCATGCCTCTGCTGATCATGAATAGGCAAGGTTACAGTGGGGAAAATGTTACACCAAGGAACATTTCCATTGGAATATCAGGAATTGGAAGTCCGACTAACGGTCTATCAGAGGAGGATGAGTTTGATTTAAAGATGGAGCTGGCAAAGACGGAGGATGAAATACAGACTTTGCGGCAGGTACTCTTGGCCAAAGAGAAATATGCAATGGACATCAGGAGGCAGCTGGGTACTGGCCCCTTCAGTGAGATTAAACAAAACCTGTCCAAAGGTTGGCAGGAAGTCCAGACCTCCAATGCATATCTGACAGCCTCAGCTACTCTGGAAGACATCAGTCAATCTAACGTgtatAAGAGGACCCAGGAGAGTATCTCTAATGCAGGACAGATGACCAGTGCTGCCCTGTCCACAGTGGGTGTGGCCATTACAAGGAGACTTGGAGACATGAGGGCACTGCCTTTGCCAAGCCCACCTCGCCCCTCCTTGGGCCACTCCATCAGTGTCCCTGCTATGTCAATGAGGCTAATTGCGAACAGTGCTTGGGGAGGAAGAGTCTGGTGAACAACATTAGAATGACATTAATGCTGCAAACATTCCAATACATTCAAGTCCTTTTGAAGACATGGTGTGAAGCGTGAAGAACAAGGTGTCCAGGATTCTAGGGATTGGCGGAGATATCGCTGGGTCTGAAAGAAGCCCATCTCAGAACAGTGGTTCCTTCCAACATAATCTATTTTTCTCTCAACCATCTGTAATCTCACTACTCCCTTCATTACTTTAACCTGATGTCATGGTCCACACTACCCCTTCAAAGAGTAAACATTATGCAGGAGGTTGATAACTTGGGTATGGCTTTGACAGTGTTGGTTCCAACCTTTCATTCATTCTAAATATGATGTAGTATTTCCAATATGTAgttatgtacactgctcaaaaaaataaagggaacacttaaacaaaacaatgtaactccaagtcaatcacacttctgtgaaatcaaactgtccacttaggaagcaacactgattgacaataaat
>XM_036945822.1
TCCAGCACAGCCTGcacaggtggctgtttgtgtttCCCGCAGCAGCAGCAAAGTTCGTTCTGAATGAATTAGGATAGCCTATACTTGATAAAATAACATCGATGAACAATATGGACAATATGTATACAAATACATCGAATTTGTTTACTCGACAGGGGTACGCCACCATCATCTCACACACTCACGTGCGGGATTaactcacattcttaaaatacttAGGTGTTGAATAAACAACGCAACATAACGTTAATATTCCAAATAAGACTACATTATGTTCTtgatttcctgtatatagctttgGCATGTAAACCATAGCGTGATACTGAATGTGAGTATAGAGAAGCATTTGAGACATCCATTATTGAACAGTAGGGATTGGACACCATTTAGCAAAAGCTAACGATAGCACGAACACGGAAAAGAAGTGCTGGGTGAAACGGAGTTGTTCATGCCTCTGCTGATCATGAATAGGCAAGGTTACAGTGGGGAAAATGTTACACCAAGGAACATTTCCATTGGAATATCAGGAATTGGAAGTCCGACTAACGGTCTATCAGAGGAGGATGAGTTTGATTTAAAGATGGAGCTGGCAAAGACGGAGGATGAAATACAGACTTTGCGGCAGGTACTCTTGGCCAAAGAGAAATATGCAATGGACATCAGGAGGCAGCTGGGTACTGGCCCCTTCAGTGAGATTAAACAAAACCTGTCCAAAGGTTGGCAGGAAGTCCAGACCTCCAATGCATATCTGACAGCCTCAGCTACTCTGGAAGACATCAGTCAATCTAACGTgtatAAGAGGACCCAGGAGAGTATCTCTAATGCAGGACAGATGACCAGTGCTGCCCTGTCCACAGTGGGTGTGGCCATTACAAGGAGACTTGGAGACATGAGGGCACTGCCTTTGCCAAGCCCACCTCGCCCCTCCTTGGGCCACTCCATCAGTGTCCCTGCTATGTCAATGAGACATTCCAATACATTCAAGTCCTTTTGAAGACATGGTGTGAAGCGTGAAGAACAAGGTGTCCAGGATTCTAGGGATTGGCGGAGATATCGCTGGGTCTGAAAGAAGCCCATCTCAGAACAGTGGTTCCTTCCAACATAATCTATTTTTCTCTCAACCATCTGTAATCTCACTACTCCCTTCATTACTTTAACCTGATGTCATGGTCCACACTACCCCTTCAAAGAGTAAACATTATGCAGGAGGTTGATAACTTGGGTATGGCTTTGACAGTGTTGGTTCCAACCTTTCATTCATTCTAAATATGATGTAGTATTTCCAATATGTAgttatgtacactgctcaaaaaaataaagggaacacttaaacaaaacaatgtaactccaagtcaatcacacttctgtgaaatcaaactgtccacttaggaagcaacactgattgacaataaat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036386.1 False 1482 mRNA 0.43 10 46423152 46439813
XM_036945822.1 True 1414 mRNA 0.43 9 46423152 46439814

Neighbor

gene id symbol gene type direction distance location
LOC110492748 ppdpf coding downstream 3156 46416560 ~ 46419996 (-)
LOC110492746 LOC106567215 coding downstream 51930 46341080 ~ 46371222 (-)
LOC110492745 mare1 coding downstream 85665 46330854 ~ 46337487 (-)
LOC110492744 LOC106567213 coding downstream 92526 46317844 ~ 46330626 (-)
LOC110492742 LOC106567211 coding downstream 129713 46287237 ~ 46293439 (-)
LOC110492749 LOC106567344 coding upstream 3109 46442923 ~ 46448034 (-)
LOC110492754 LOC106567220 coding upstream 38502 46478316 ~ 46486506 (-)
LOC110492757 LOC106567223 coding upstream 50261 46490075 ~ 46494132 (-)
LOC110491073 LOC106572454 coding upstream 73926 46513740 ~ 46518909 (-)
LOC110492758 LOC106567225 coding upstream 84279 46524093 ~ 46531221 (-)
G1380786 NA non-coding downstream 2711 46420167 ~ 46420441 (-)
G1380741 NA non-coding downstream 84069 46338846 ~ 46339083 (-)
G1380722 NA non-coding downstream 138370 46284545 ~ 46284782 (-)
G1380721 LOC100701228 non-coding downstream 145665 46277225 ~ 46277487 (-)
G1380720 NA non-coding downstream 146114 46276708 ~ 46277038 (-)
G1380768 NA non-coding upstream 246 46440060 ~ 46517372 (-)
G1380817 NA non-coding upstream 47336 46487150 ~ 46548798 (-)
G1380895 NA non-coding upstream 162301 46602115 ~ 46603005 (-)
G1380965 NA non-coding upstream 336379 46776193 ~ 46776427 (-)
G1380431 NA other downstream 717699 45705110 ~ 45705453 (-)
LOC110492109 LOC106567177 other downstream 795454 45613938 ~ 45627786 (-)
slc48a1a LOC106567162 other downstream 1102774 45315947 ~ 45320378 (-)
plxna2 LOC106567158 other downstream 1458670 44621739 ~ 44964691 (-)
LOC110492764 fkb1a other upstream 158883 46598697 ~ 46601691 (-)
LOC110492767 LOC106572444 other upstream 217653 46657459 ~ 46668762 (-)
LOC110491077 LOC106567232 other upstream 319473 46724969 ~ 46761466 (-)
G1381036 NA other upstream 438797 46878611 ~ 46879146 (-)
LOC110492137 LOC106567248 other upstream 647355 47081938 ~ 47089563 (-)

Expression


Co-expression Network