LOC110492749 (LOC106567344)


Basic Information

Item Value
gene id LOC110492749
gene name LOC106567344
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 46442923 ~ 46448034 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945821.1
GTTTGGTCGGGGGGCGGGGACAATATACTGCAGCTGTCCATGGTTGGGTTTGGTGGGTGCGCACGGTTCTCTGGGATGCGACCATAATCACATACCGTTATTATATCTCTCTGGATCatttccctatacagtgcatcAAAACCAACTACAAGAGGGTAGGCCTACTGGAGTCAGGGAACCCCTGCTGACAGTGCACCAATTTGGAGTGGCGGTAGGGACAAGATTGTGAAGGACGTGAGGCATCATGGCAGCTCATGAACAGGCGAGGCAGCGCTCACTCTCCACCTCTGGTGAATCACTCTACATTGTGCTTGGCATTGACAAGCTAGCCACTCCCGACGATATCAAGAAATCCTACAGAAAACTTGCGTTGAAATTCCACCCTGATAAGAACCCAGATAACCCAGAAGCTTCTGACAAGTTTAAGGAGATCAACAATGCCCATGCCATTCTGAACGATCCCACAAAGCGGAACATCTATGACAAGTACGGCTCCCTGGGACTGTACGTGGCTGAGCAGTTTGGCGAGGAGAACGTGAACACCTACTTTGTTCTGTCCAGCTGGTGGGCTAAGGCGTTGTTTGTGTTCTGTGGCCTTGCCACTGGCTGCTActtctgctgttgtctgtgttgTTGCTGTAACTGCTGCTGTGGGAAGTGTAAACCGCGGCCCCCAGAGGGCCAGGAGCCCGATTTCTATGTGTCCCCTGAGGACCTGGAGGCCCAAATGCAGTCTGACGAGAGAGGTGAGATCGACTGCTTATTGTagggTGGCGGCGAAGCCATCTTGGTGCAGCCATCAGCGACAGAGACCACCCAGCTGACGTCAGATGGTCACCATTCCTCCTACCAAACCGACATGGGCTTCAACTAAACCCCATCCCTGTCCTGGCCTGCTACCCTGCCCCACCTTAAAAGGATGATAGGGGCAATCTGTTTTAACTTCACTAAGAGCGCCATGTcctggagaggagatggaggagcgaGCTTGGCCTACATACAAAACTCttgaagacccccccccccccccccccctccccccccatttCCACCCTCTCCAGAATGGTCCAGTCTCGCCTCTTATGTaggaagaaaaagaaagaaatggTTTGCTTCCTGCCCTTTTGTTCTTTTGTATCCTTTTGGCCTTTGACCTCACAATCCTCCATCCCCACAGTCCCCTTTCCATATTCAGTGTGATGGTGTAGCATGCACTGAGAAAAAAAATCTTTGTTTTCATTTGTTGAATGTGACATTTGTTGTGTTTCCCGAATTCTGTTGGTGCATAGGTATGTGCAATACGTAcagaccagtcaaaagtttggacacacctacttattcaagggctttcctttattttgactattctctacattgtagaataattgtgaagacattaaaactgaaataacacatatggaatcatgta
>XM_021567217.2
TACTGCAGCTGTCCATGGTTGGGTTTGGTGGGTGCGCACGGTTCTCTGGGATGCGACCATAATCACATACCGTTATTATATCTCTCTGGATCatttccctatacagtgcatcAAAACCAACTACAAGAGATTGTGAAGGACGTGAGGCATCATGGCAGCTCATGAACAGGCGAGGCAGCGCTCACTCTCCACCTCTGGTGAATCACTCTACATTGTGCTTGGCATTGACAAGCTAGCCACTCCCGACGATATCAAGAAATCCTACAGAAAACTTGCGTTGAAATTCCACCCTGATAAGAACCCAGATAACCCAGAAGCTTCTGACAAGTTTAAGGAGATCAACAATGCCCATGCCATTCTGAACGATCCCACAAAGCGGAACATCTATGACAAGTACGGCTCCCTGGGACTGTACGTGGCTGAGCAGTTTGGCGAGGAGAACGTGAACACCTACTTTGTTCTGTCCAGCTGGTGGGCTAAGGCGTTGTTTGTGTTCTGTGGCCTTGCCACTGGCTGCTActtctgctgttgtctgtgttgTTGCTGTAACTGCTGCTGTGGGAAGTGTAAACCGCGGCCCCCAGAGGGCCAGGAGCCCGATTTCTATGTGTCCCCTGAGGACCTGGAGGCCCAAATGCAGTCTGACGAGAGAGagggTGGCGGCGAAGCCATCTTGGTGCAGCCATCAGCGACAGAGACCACCCAGCTGACGTCAGATGGTCACCATTCCTCCTACCAAACCGACATGGGCTTCAACTAAACCCCATCCCTGTCCTGGCCTGCTACCCTGCCCCACCTTAAAAGGATGATAGGGGCAATCTGTTTTAACTTCACTAAGAGCGCCATGTcctggagaggagatggaggagcgaGCTTGGCCTACATACAAAACTCttgaagacccccccccccccccccccctccccccccatttCCACCCTCTCCAGAATGGTCCAGTCTCGCCTCTTATGTaggaagaaaaagaaagaaatggTTTGCTTCCTGCCCTTTTGTTCTTTTGTATCCTTTTGGCCTTTGACCTCACAATCCTCCATCCCCACAGTCCCCTTTCCATATTCAGTGTGATGGTGTAGCATGCACTGAGAAAAAAAATCTTTGTTTTCATTTGTTGAATGTGACATTTGTTGTGTTTCCCGAATTCTGTTGGTGCATAGGTATGTGCAATACGTAcagaccagtcaaaagtttggacacacctacttattcaagggctttcctttattttgactattctctacattgtagaataattgtgaagacattaaaactgaaataacacatatggaatcat
>XM_021567215.2
GTTTGGTCGGGGGGCGGGGACAATATACTGCAGCTGTCCATGGTTGGGTTTGGTGGGTGCGCACGGTTCTCTGGGATGCGACCATAATCACATACCGTTATTATATCTCTCTGGATCatttccctatacagtgcatcAAAACCAACTACAAGAGGGTAGGCCTACTGGAGTCAGGGAACCCCTGCTGACAGTGCACCAATTTGGAGTGGCGATTGTGAAGGACGTGAGGCATCATGGCAGCTCATGAACAGGCGAGGCAGCGCTCACTCTCCACCTCTGGTGAATCACTCTACATTGTGCTTGGCATTGACAAGCTAGCCACTCCCGACGATATCAAGAAATCCTACAGAAAACTTGCGTTGAAATTCCACCCTGATAAGAACCCAGATAACCCAGAAGCTTCTGACAAGTTTAAGGAGATCAACAATGCCCATGCCATTCTGAACGATCCCACAAAGCGGAACATCTATGACAAGTACGGCTCCCTGGGACTGTACGTGGCTGAGCAGTTTGGCGAGGAGAACGTGAACACCTACTTTGTTCTGTCCAGCTGGTGGGCTAAGGCGTTGTTTGTGTTCTGTGGCCTTGCCACTGGCTGCTActtctgctgttgtctgtgttgTTGCTGTAACTGCTGCTGTGGGAAGTGTAAACCGCGGCCCCCAGAGGGCCAGGAGCCCGATTTCTATGTGTCCCCTGAGGACCTGGAGGCCCAAATGCAGTCTGACGAGAGAGagggTGGCGGCGAAGCCATCTTGGTGCAGCCATCAGCGACAGAGACCACCCAGCTGACGTCAGATGGTCACCATTCCTCCTACCAAACCGACATGGGCTTCAACTAAACCCCATCCCTGTCCTGGCCTGCTACCCTGCCCCACCTTAAAAGGATGATAGGGGCAATCTGTTTTAACTTCACTAAGAGCGCCATGTcctggagaggagatggaggagcgaGCTTGGCCTACATACAAAACTCttgaagacccccccccccccccccccctccccccccatttCCACCCTCTCCAGAATGGTCCAGTCTCGCCTCTTATGTaggaagaaaaagaaagaaatggTTTGCTTCCTGCCCTTTTGTTCTTTTGTATCCTTTTGGCCTTTGACCTCACAATCCTCCATCCCCACAGTCCCCTTTCCATATTCAGTGTGATGGTGTAGCATGCACTGAGAAAAAAAATCTTTGTTTTCATTTGTTGAATGTGACATTTGTTGTGTTTCCCGAATTCTGTTGGTGCATAGGTATGTGCAATACGTAcagaccagtcaaaagtttggacacacctacttattcaagggctttcctttattttgactattctctacattgtagaataattgtgaagacattaaaactgaaataacacatatggaatcat
>XM_021567216.2
GTTTGGTCGGGGGGCGGGGACAATATACTGCAGCTGTCCATGGTTGGGTTTGGTGGGTGCGCACGGTTCTCTGGGATGCGACCATAATCACATACCGTTATTATATCTCTCTGGATCatttccctatacagtgcatcAAAACCAACTACAAGAGGGTAGGCCTACTGGAGTCAGGGAACCCCTGCTGACAGTGCACCAATTTGGAGTGGCGGTAGGGACAAGATTGTGAAGGACGTGAGGCATCATGGCAGCTCATGAACAGGCGAGGCAGCGCTCACTCTCCACCTCTGGTGAATCACTCTACATTGTGCTTGGCATTGACAAGCTAGCCACTCCCGACGATATCAAGAAATCCTACAGAAAACTTGCGTTGAAATTCCACCCTGATAAGAACCCAGATAACCCAGAAGCTTCTGACAAGTTTAAGGAGATCAACAATGCCCATGCCATTCTGAACGATCCCACAAAGCGGAACATCTATGACAAGTACGGCTCCCTGGGACTGTACGTGGCTGAGCAGTTTGGCGAGGAGAACGTGAACACCTACTTTGTTCTGTCCAGCTGGTGGGCTAAGGCGTTGTTTGTGTTCTGTGGCCTTGCCACTGGCTGCTActtctgctgttgtctgtgttgTTGCTGTAACTGCTGCTGTGGGAAGTGTAAACCGCGGCCCCCAGAGGGCCAGGAGCCCGATTTCTATGTGTCCCCTGAGGACCTGGAGGCCCAAATGCAGTCTGACGAGAGAGagggTGGCGGCGAAGCCATCTTGGTGCAGCCATCAGCGACAGAGACCACCCAGCTGACGTCAGATGGTCACCATTCCTCCTACCAAACCGACATGGGCTTCAACTAAACCCCATCCCTGTCCTGGCCTGCTACCCTGCCCCACCTTAAAAGGATGATAGGGGCAATCTGTTTTAACTTCACTAAGAGCGCCATGTcctggagaggagatggaggagcgaGCTTGGCCTACATACAAAACTCttgaagacccccccccccccccccccctccccccccatttCCACCCTCTCCAGAATGGTCCAGTCTCGCCTCTTATGTaggaagaaaaagaaagaaatggTTTGCTTCCTGCCCTTTTGTTCTTTTGTATCCTTTTGGCCTTTGACCTCACAATCCTCCATCCCCACAGTCCCCTTTCCATATTCAGTGTGATGGTGTAGCATGCACTGAGAAAAAAAATCTTTGTTTTCATTTGTTGAATGTGACATTTGTTGTGTTTCCCGAATTCTGTTGGTGCATAGGTATGTGCAATACGTAcagaccagtcaaaagtttggacacacctacttattcaagggctttcctttattttgactattctctacattgtagaataattgtgaagacattaaaactgaaataacacatatggaatcat
>XM_036945820.1
GTTTGGTCGGGGGGCGGGGACAATATACTGCAGCTGTCCATGGTTGGGTTTGGTGGGTGCGCACGGTTCTCTGGGATGCGACCATAATCACATACCGTTATTATATCTCTCTGGATCatttccctatacagtgcatcAAAACCAACTACAAGAGGGTAGGCCTACTGGAGTCAGGGAACCCCTGCTGACAGTGCACCAATTTGGAGTGGCGGTAGGGACAAGGTGTCCAATAGATTCCTGGAGTATTGTGAAGGACGTGAGGCATCATGGCAGCTCATGAACAGGCGAGGCAGCGCTCACTCTCCACCTCTGGTGAATCACTCTACATTGTGCTTGGCATTGACAAGCTAGCCACTCCCGACGATATCAAGAAATCCTACAGAAAACTTGCGTTGAAATTCCACCCTGATAAGAACCCAGATAACCCAGAAGCTTCTGACAAGTTTAAGGAGATCAACAATGCCCATGCCATTCTGAACGATCCCACAAAGCGGAACATCTATGACAAGTACGGCTCCCTGGGACTGTACGTGGCTGAGCAGTTTGGCGAGGAGAACGTGAACACCTACTTTGTTCTGTCCAGCTGGTGGGCTAAGGCGTTGTTTGTGTTCTGTGGCCTTGCCACTGGCTGCTActtctgctgttgtctgtgttgTTGCTGTAACTGCTGCTGTGGGAAGTGTAAACCGCGGCCCCCAGAGGGCCAGGAGCCCGATTTCTATGTGTCCCCTGAGGACCTGGAGGCCCAAATGCAGTCTGACGAGAGAGagggTGGCGGCGAAGCCATCTTGGTGCAGCCATCAGCGACAGAGACCACCCAGCTGACGTCAGATGGTCACCATTCCTCCTACCAAACCGACATGGGCTTCAACTAAACCCCATCCCTGTCCTGGCCTGCTACCCTGCCCCACCTTAAAAGGATGATAGGGGCAATCTGTTTTAACTTCACTAAGAGCGCCATGTcctggagaggagatggaggagcgaGCTTGGCCTACATACAAAACTCttgaagacccccccccccccccccccctccccccccatttCCACCCTCTCCAGAATGGTCCAGTCTCGCCTCTTATGTaggaagaaaaagaaagaaatggTTTGCTTCCTGCCCTTTTGTTCTTTTGTATCCTTTTGGCCTTTGACCTCACAATCCTCCATCCCCACAGTCCCCTTTCCATATTCAGTGTGATGGTGTAGCATGCACTGAGAAAAAAAATCTTTGTTTTCATTTGTTGAATGTGACATTTGTTGTGTTTCCCGAATTCTGTTGGTGCATAGGTATGTGCAATACGTAcagaccagtcaaaagtttggacacacctacttattcaagggctttcctttattttgactattctctacattgtagaataattgtgaagacattaaaactgaaataacacatatggaatcat

Function

NR:

description
PREDICTED: dnaJ homolog subfamily C member 5-like isoform X1

GO: NA

KEGG:

id description
K09525 DNAJC5; DnaJ homolog subfamily C member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945821.1 False 1429 mRNA 0.50 6 46442923 46448034
XM_021567217.2 False 1312 mRNA 0.49 5 46442926 46448009
XM_021567215.2 False 1394 mRNA 0.50 6 46442926 46448034
XM_021567216.2 False 1405 mRNA 0.50 6 46442926 46448034
XM_036945820.1 True 1427 mRNA 0.50 6 46442926 46448034

Neighbor

gene id symbol gene type direction distance location
LOC110492750 LOC106567218 coding downstream 3109 46423152 ~ 46439814 (-)
LOC110492748 ppdpf coding downstream 22927 46416560 ~ 46419996 (-)
LOC110492746 LOC106567215 coding downstream 71701 46341080 ~ 46371222 (-)
LOC110492745 mare1 coding downstream 105436 46330854 ~ 46337487 (-)
LOC110492744 LOC106567213 coding downstream 112297 46317844 ~ 46330626 (-)
LOC110492754 LOC106567220 coding upstream 30282 46478316 ~ 46486506 (-)
LOC110492757 LOC106567223 coding upstream 42041 46490075 ~ 46494132 (-)
LOC110491073 LOC106572454 coding upstream 65706 46513740 ~ 46518909 (-)
LOC110492758 LOC106567225 coding upstream 76059 46524093 ~ 46531221 (-)
LOC110492764 fkb1a coding upstream 150663 46598697 ~ 46601691 (-)
G1380786 NA non-coding downstream 22482 46420167 ~ 46420441 (-)
G1380741 NA non-coding downstream 103840 46338846 ~ 46339083 (-)
G1380722 NA non-coding downstream 158141 46284545 ~ 46284782 (-)
G1380721 LOC100701228 non-coding downstream 165436 46277225 ~ 46277487 (-)
G1380720 NA non-coding downstream 165885 46276708 ~ 46277038 (-)
G1380817 NA non-coding upstream 39116 46487150 ~ 46548798 (-)
G1380895 NA non-coding upstream 154081 46602115 ~ 46603005 (-)
G1380965 NA non-coding upstream 328159 46776193 ~ 46776427 (-)
G1380966 NA non-coding upstream 328680 46776714 ~ 46776950 (-)
G1380431 NA other downstream 737470 45705110 ~ 45705453 (-)
LOC110492109 LOC106567177 other downstream 815225 45613938 ~ 45627786 (-)
slc48a1a LOC106567162 other downstream 1122545 45315947 ~ 45320378 (-)
plxna2 LOC106567158 other downstream 1478441 44621739 ~ 44964691 (-)
LOC110492767 LOC106572444 other upstream 209433 46657459 ~ 46668762 (-)
LOC110491077 LOC106567232 other upstream 311253 46724969 ~ 46761466 (-)
G1381036 NA other upstream 430577 46878611 ~ 46879146 (-)
LOC110492137 LOC106567248 other upstream 639135 47081938 ~ 47089563 (-)

Expression


Co-expression Network